A citation-based method for searching scientific literature

Shiwu Li, Yifan Li, Xiaoyan Li, Jiewei Liu, Yongxia Huo, Junyang Wang, Zhongchun Liu, Ming Li, Xiong-Jian Luo. Mol Psychiatry 2020
Times Cited: 19







List of co-cited articles
176 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.
Naomi R Wray, Stephan Ripke, Manuel Mattheisen, Maciej Trzaskowski, Enda M Byrne, Abdel Abdellaoui, Mark J Adams, Esben Agerbo, Tracy M Air, Till M F Andlauer,[...]. Nat Genet 2018
47

Genetic effects on gene expression across human tissues.
Alexis Battle, Christopher D Brown, Barbara E Engelhardt, Stephen B Montgomery. Nature 2017
31

Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.
Craig L Hyde, Michael W Nagle, Chao Tian, Xing Chen, Sara A Paciga, Jens R Wendland, Joyce Y Tung, David A Hinds, Roy H Perlis, Ashley R Winslow. Nat Genet 2016
350
26

Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.
David M Howard, Mark J Adams, Toni-Kim Clarke, Jonathan D Hafferty, Jude Gibson, Masoud Shirali, Jonathan R I Coleman, Saskia P Hagenaars, Joey Ward, Eleanor M Wigmore,[...]. Nat Neurosci 2019
522
26


Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.
David M Howard, Mark J Adams, Masoud Shirali, Toni-Kim Clarke, Riccardo E Marioni, Gail Davies, Jonathan R I Coleman, Clara Alloza, Xueyi Shen, Miruna C Barbu,[...]. Nat Commun 2018
182
21



HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Ivan V Kulakovskiy, Ilya E Vorontsov, Ivan S Yevshin, Ruslan N Sharipov, Alla D Fedorova, Eugene I Rumynskiy, Yulia A Medvedeva, Arturo Magana-Mora, Vladimir B Bajic, Dmitry A Papatsenko,[...]. Nucleic Acids Res 2018
254
21

Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression.
Marco Cavalli, Gang Pan, Helena Nord, Ola Wallerman, Emelie Wallén Arzt, Olof Berggren, Ingegerd Elvers, Maija-Leena Eloranta, Lars Rönnblom, Kerstin Lindblad Toh,[...]. Hum Genet 2016
29
21

Genome-wide association study identifies 30 loci associated with bipolar disorder.
Eli A Stahl, Gerome Breen, Andreas J Forstner, Andrew McQuillin, Stephan Ripke, Vassily Trubetskoy, Manuel Mattheisen, Yunpeng Wang, Jonathan R I Coleman, Héléna A Gaspar,[...]. Nat Genet 2019
546
21

Systematic localization of common disease-associated variation in regulatory DNA.
Matthew T Maurano, Richard Humbert, Eric Rynes, Robert E Thurman, Eric Haugen, Hao Wang, Alex P Reynolds, Richard Sandstrom, Hongzhu Qu, Jennifer Brody,[...]. Science 2012
21

Genetic Control of Expression and Splicing in Developing Human Brain Informs Disease Mechanisms.
Rebecca L Walker, Gokul Ramaswami, Christopher Hartl, Nicholas Mancuso, Michael J Gandal, Luis de la Torre-Ubieta, Bogdan Pasaniuc, Jason L Stein, Daniel H Geschwind. Cell 2019
58
21

motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites.
Simon G Coetzee, Gerhard A Coetzee, Dennis J Hazelett. Bioinformatics 2015
93
21

The Encyclopedia of DNA elements (ENCODE): data portal update.
Carrie A Davis, Benjamin C Hitz, Cricket A Sloan, Esther T Chan, Jean M Davidson, Idan Gabdank, Jason A Hilton, Kriti Jain, Ulugbek K Baymuradov, Aditi K Narayanan,[...]. Nucleic Acids Res 2018
669
21


Functional genomics reveal gene regulatory mechanisms underlying schizophrenia risk.
Yongxia Huo, Shiwu Li, Jiewei Liu, Xiaoyan Li, Xiong-Jian Luo. Nat Commun 2019
41
21


The genetics of major depression.
Jonathan Flint, Kenneth S Kendler. Neuron 2014
303
15


Analysis of shared heritability in common disorders of the brain.
Verneri Anttila, Brendan Bulik-Sullivan, Hilary K Finucane, Raymond K Walters, Jose Bras, Laramie Duncan, Valentina Escott-Price, Guido J Falcone, Padhraig Gormley, Rainer Malik,[...]. Science 2018
759
15



The Genetics of Transcription Factor DNA Binding Variation.
Bart Deplancke, Daniel Alpern, Vincent Gardeux. Cell 2016
165
15

Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data.
Victor G Levitsky, Ivan V Kulakovskiy, Nikita I Ershov, Dmitry Yu Oshchepkov, Vsevolod J Makeev, T C Hodgman, Tatyana I Merkulova. BMC Genomics 2014
27
15

Finding the missing heritability of complex diseases.
Teri A Manolio, Francis S Collins, Nancy J Cox, David B Goldstein, Lucia A Hindorff, David J Hunter, Mark I McCarthy, Erin M Ramos, Lon R Cardon, Aravinda Chakravarti,[...]. Nature 2009
15

Integration of GWAS and brain eQTL identifies FLOT1 as a risk gene for major depressive disorder.
Jingmei Zhong, Shiwu Li, Wanli Zeng, Xiaoyan Li, Chunjie Gu, Jiewei Liu, Xiong-Jian Luo. Neuropsychopharmacology 2019
20
15

Depression.
Gin S Malhi, J John Mann. Lancet 2018
690
15

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.
Annalisa Buniello, Jacqueline A L MacArthur, Maria Cerezo, Laura W Harris, James Hayhurst, Cinzia Malangone, Aoife McMahon, Joannella Morales, Edward Mountjoy, Elliot Sollis,[...]. Nucleic Acids Res 2019
15

Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.
Jacob C Ulirsch, Satish K Nandakumar, Li Wang, Felix C Giani, Xiaolan Zhang, Peter Rogov, Alexandre Melnikov, Patrick McDonel, Ron Do, Tarjei S Mikkelsen,[...]. Cell 2016
167
15

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.
Ryan Tewhey, Dylan Kotliar, Daniel S Park, Brandon Liu, Sarah Winnicki, Steven K Reilly, Kristian G Andersen, Tarjei S Mikkelsen, Eric S Lander, Stephen F Schaffner,[...]. Cell 2016
185
15

Integrative approaches for large-scale transcriptome-wide association studies.
Alexander Gusev, Arthur Ko, Huwenbo Shi, Gaurav Bhatia, Wonil Chung, Brenda W J H Penninx, Rick Jansen, Eco J C de Geus, Dorret I Boomsma, Fred A Wright,[...]. Nat Genet 2016
680
15

Synergistic effects of common schizophrenia risk variants.
Nadine Schrode, Seok-Man Ho, Kazuhiko Yamamuro, Amanda Dobbyn, Laura Huckins, Marliette R Matos, Esther Cheng, P J Michael Deans, Erin Flaherty, Natalie Barretto,[...]. Nat Genet 2019
73
15

The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis.
Luis de la Torre-Ubieta, Jason L Stein, Hyejung Won, Carli K Opland, Dan Liang, Daning Lu, Daniel H Geschwind. Cell 2018
135
15

Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.
Matthew T Maurano, Eric Haugen, Richard Sandstrom, Jeff Vierstra, Anthony Shafer, Rajinder Kaul, John A Stamatoyannopoulos. Nat Genet 2015
133
15

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.
Zhihong Zhu, Futao Zhang, Han Hu, Andrew Bakshi, Matthew R Robinson, Joseph E Powell, Grant W Montgomery, Michael E Goddard, Naomi R Wray, Peter M Visscher,[...]. Nat Genet 2016
754
15

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
15

Comprehensive functional genomic resource and integrative model for the human brain.
Daifeng Wang, Shuang Liu, Jonathan Warrell, Hyejung Won, Xu Shi, Fabio C P Navarro, Declan Clarke, Mengting Gu, Prashant Emani, Yucheng T Yang,[...]. Science 2018
275
15

A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation.
Damon Polioudakis, Luis de la Torre-Ubieta, Justin Langerman, Andrew G Elkins, Xu Shi, Jason L Stein, Celine K Vuong, Susanne Nichterwitz, Melinda Gevorgian, Carli K Opland,[...]. Neuron 2019
121
15

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
15

Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.
Jeanne E Savage, Philip R Jansen, Sven Stringer, Kyoko Watanabe, Julien Bryois, Christiaan A de Leeuw, Mats Nagel, Swapnil Awasthi, Peter B Barr, Jonathan R I Coleman,[...]. Nat Genet 2018
344
15

Chromosome conformation elucidates regulatory relationships in developing human brain.
Hyejung Won, Luis de la Torre-Ubieta, Jason L Stein, Neelroop N Parikshak, Jerry Huang, Carli K Opland, Michael J Gandal, Gavin J Sutton, Farhad Hormozdiari, Daning Lu,[...]. Nature 2016
270
15

Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.
Antonio F Pardiñas, Peter Holmans, Andrew J Pocklington, Valentina Escott-Price, Stephan Ripke, Noa Carrera, Sophie E Legge, Sophie Bishop, Darren Cameron, Marian L Hamshere,[...]. Nat Genet 2018
638
15

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
15

Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma.
Jiyeon Choi, Tongwu Zhang, Andrew Vu, Julien Ablain, Matthew M Makowski, Leandro M Colli, Mai Xu, Rebecca C Hennessey, Jinhu Yin, Harriet Rothschild,[...]. Nat Commun 2020
21
15

SNP2TFBS - a database of regulatory SNPs affecting predicted transcription factor binding site affinity.
Sunil Kumar, Giovanna Ambrosini, Philipp Bucher. Nucleic Acids Res 2017
86
15

Genetic and epigenetic fine mapping of causal autoimmune disease variants.
Kyle Kai-How Farh, Alexander Marson, Jiang Zhu, Markus Kleinewietfeld, William J Housley, Samantha Beik, Noam Shoresh, Holly Whitton, Russell J H Ryan, Alexander A Shishkin,[...]. Nature 2015
998
15

Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases.
Marco Cavalli, Nicholas Baltzer, Husen M Umer, Jan Grau, Ioana Lemnian, Gang Pan, Ola Wallerman, Rapolas Spalinskas, Pelin Sahlén, Ivo Grosse,[...]. Sci Rep 2019
12
25

Multi-tissue transcriptome analyses identify genetic mechanisms underlying neuropsychiatric traits.
Eric R Gamazon, Aeilko H Zwinderman, Nancy J Cox, Damiaan Denys, Eske M Derks. Nat Genet 2019
43
15

Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals.
Marco Cavalli, Gang Pan, Helena Nord, Emelie Wallén Arzt, Ola Wallerman, Claes Wadelius. Genomics 2016
16
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.