A citation-based method for searching scientific literature


List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Automated assembly of centromeres from ultra-long error-prone reads.
Andrey V Bzikadze, Pavel A Pevzner. Nat Biotechnol 2020
11
100

Break-induced telomere synthesis underlies alternative telomere maintenance.
Robert L Dilley, Priyanka Verma, Nam Woo Cho, Harrison D Winters, Anne R Wondisford, Roger A Greenberg. Nature 2016
200
100

APOBEC3-dependent kataegis and TREX1-driven chromothripsis during telomere crisis.
John Maciejowski, Aikaterini Chatzipli, Alexandra Dananberg, Kevan Chu, Eleonore Toufektchan, Leszek J Klimczak, Dmitry A Gordenin, Peter J Campbell, Titia de Lange. Nat Genet 2020
33
100

Chromosomally unstable mouse tumours have genomic alterations similar to diverse human cancers.
Richard S Maser, Bhudipa Choudhury, Peter J Campbell, Bin Feng, Kwok-Kin Wong, Alexei Protopopov, Jennifer O'Neil, Alejandro Gutierrez, Elena Ivanova, Ilana Perna,[...]. Nature 2007
299
100

Telomere dysfunction promotes non-reciprocal translocations and epithelial cancers in mice.
S E Artandi, S Chang, S L Lee, S Alson, G J Gottlieb, L Chin, R A DePinho. Nature 2000
837
100

Polymerase theta-mediated end joining of replication-associated DNA breaks in C. elegans.
Sophie F Roerink, Robin van Schendel, Marcel Tijsterman. Genome Res 2014
86
100

MUMmer4: A fast and versatile genome alignment system.
Guillaume Marçais, Arthur L Delcher, Adam M Phillippy, Rachel Coston, Steven L Salzberg, Aleksey Zimin. PLoS Comput Biol 2018
306
100


The Dfam database of repetitive DNA families.
Robert Hubley, Robert D Finn, Jody Clements, Sean R Eddy, Thomas A Jones, Weidong Bao, Arian F A Smit, Travis J Wheeler. Nucleic Acids Res 2016
215
100

Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon,[...]. Nature 2020
127
100

End joining at Caenorhabditis elegans telomeres.
Mia Rochelle Lowden, Bettina Meier, Teresa Wei-Sy Lee, Julie Hall, Shawn Ahmed. Genetics 2008
20
100

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy. Genome Res 2017
100


On the origin of Robertsonian fusions in nature: evidence of telomere shortening in wild house mice.
R A Sánchez-Guillén, L Capilla, R Reig-Viader, M Martínez-Plana, C Pardo-Camacho, M Andrés-Nieto, J Ventura, A Ruiz-Herrera. J Evol Biol 2015
10
100

Dicentric breakage at telomere fusions.
Sabrina Pobiega, Stéphane Marcand. Genes Dev 2010
27
100

Nanopore sequencing and assembly of a human genome with ultra-long reads.
Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes,[...]. Nat Biotechnol 2018
615
100

Rapid chromosomal evolution in island mice.
J Britton-Davidian, J Catalan, M da Graça Ramalhinho, G Ganem, J C Auffray, R Capela, M Biscoito, J B Searle, M da Luz Mathias. Nature 2000
87
100


Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
100

Assemblytics: a web analytics tool for the detection of variants from an assembly.
Maria Nattestad, Michael C Schatz. Bioinformatics 2016
100
100

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Felipe A Simão, Robert M Waterhouse, Panagiotis Ioannidis, Evgenia V Kriventseva, Evgeny M Zdobnov. Bioinformatics 2015
100

Telomeric repeats (TTAGGC)n are sufficient for chromosome capping function in Caenorhabditis elegans.
C Wicky, A M Villeneuve, N Lauper, L Codourey, H Tobler, F Müller. Proc Natl Acad Sci U S A 1996
72
100

BEDTools: a flexible suite of utilities for comparing genomic features.
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
100

Bioconda: sustainable and comprehensive software distribution for the life sciences.
Björn Grüning, Ryan Dale, Andreas Sjödin, Brad A Chapman, Jillian Rowe, Christopher H Tomkins-Tinch, Renan Valieris, Johannes Köster. Nat Methods 2018
251
100

Origin of human chromosome 2: an ancestral telomere-telomere fusion.
J W IJdo, A Baldini, D C Ward, S T Reeders, R A Wells. Proc Natl Acad Sci U S A 1991
249
100


Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
Aaron M Wenger, Paul Peluso, William J Rowell, Pi-Chuan Chang, Richard J Hall, Gregory T Concepcion, Jana Ebler, Arkarachai Fungtammasan, Alexey Kolesnikov, Nathan D Olson,[...]. Nat Biotechnol 2019
229
100

Repbase Update, a database of repetitive elements in eukaryotic genomes.
Weidong Bao, Kenji K Kojima, Oleksiy Kohany. Mob DNA 2015
922
100

DNA synthesis generates terminal duplications that seal end-to-end chromosome fusions.
Mia Rochelle Lowden, Stephane Flibotte, Donald G Moerman, Shawn Ahmed. Science 2011
35
100




Telomerase lost?
James M Mason, Thomas A Randall, Radmila Capkova Frydrychova. Chromosoma 2016
34
100


Repeats in genomic DNA: mining and meaning.
J Jurka. Curr Opin Struct Biol 1998
202
100

Adaptation to DNA damage checkpoint in senescent telomerase-negative cells promotes genome instability.
Héloïse Coutelier, Zhou Xu, Mony Chenda Morisse, Maoussi Lhuillier-Akakpo, Serge Pelet, Gilles Charvin, Karine Dubrana, Maria Teresa Teixeira. Genes Dev 2018
15
100

Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans.
Chuna Kim, Jun Kim, Sunghyun Kim, Daniel E Cook, Kathryn S Evans, Erik C Andersen, Junho Lee. Genome Res 2019
16
100

Recompleting the Caenorhabditis elegans genome.
Jun Yoshimura, Kazuki Ichikawa, Massa J Shoura, Karen L Artiles, Idan Gabdank, Lamia Wahba, Cheryl L Smith, Mark L Edgley, Ann E Rougvie, Andrew Z Fire,[...]. Genome Res 2019
32
100


The kinetochores of Caenorhabditis elegans.
D G Albertson, J N Thomson. Chromosoma 1982
122
100

Molecular analysis of telomere fusions in Arabidopsis: multiple pathways for chromosome end-joining.
Michelle Heacock, Elizabeth Spangler, Karel Riha, Jasna Puizina, Dorothy E Shippen. EMBO J 2004
122
100

Telomere maintenance through recruitment of internal genomic regions.
Beomseok Seo, Chuna Kim, Mark Hills, Sanghyun Sung, Hyesook Kim, Eunkyeong Kim, Daisy S Lim, Hyun-Seok Oh, Rachael Mi Jung Choi, Jongsik Chun,[...]. Nat Commun 2015
14
100


C. elegans noncoding RNA genes.
Shawn L Stricklin, Sam Griffiths-Jones, Sean R Eddy. WormBook 2005
28
100

Telomere dysfunction triggers extensive DNA fragmentation and evolution of complex chromosome abnormalities in human malignant tumors.
D Gisselsson, T Jonson, A Petersén, B Strömbeck, P Dal Cin, M Höglund, F Mitelman, F Mertens, N Mandahl. Proc Natl Acad Sci U S A 2001
320
100

WormBase: a modern Model Organism Information Resource.
Todd W Harris, Valerio Arnaboldi, Scott Cain, Juancarlos Chan, Wen J Chen, Jaehyoung Cho, Paul Davis, Sibyl Gao, Christian A Grove, Ranjana Kishore,[...]. Nucleic Acids Res 2020
76
100

Fast and accurate de novo genome assembly from long uncorrected reads.
Robert Vaser, Ivan Sović, Niranjan Nagarajan, Mile Šikić. Genome Res 2017
537
100

Telomere dysfunction increases mutation rate and genomic instability.
J A Hackett, D M Feldser, C W Greider. Cell 2001
273
100

WormBase: network access to the genome and biology of Caenorhabditis elegans.
L Stein, P Sternberg, R Durbin, J Thierry-Mieg, J Spieth. Nucleic Acids Res 2001
218
100

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.