A citation-based method for searching scientific literature

Soyeong Jun, Hyeonseob Lim, Honggu Chun, Ji Hyun Lee, Duhee Bang. Commun Biol 2020
Times Cited: 9







List of co-cited articles
136 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage.
Alexis C Komor, Yongjoo B Kim, Michael S Packer, John A Zuris, David R Liu. Nature 2016
77

A CRISPR-based base-editing screen for the functional assessment of BRCA1 variants.
Jiyeon Kweon, An-Hee Jang, Ha Rim Shin, Ji-Eun See, Woochang Lee, Jong Won Lee, Suhwan Chang, Kyunggon Kim, Yongsub Kim. Oncogene 2020
21
77

Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage.
Nicole M Gaudelli, Alexis C Komor, Holly A Rees, Michael S Packer, Ahmed H Badran, David I Bryson, David R Liu. Nature 2017
77

CRISPR-STOP: gene silencing through base-editing-induced nonsense mutations.
Cem Kuscu, Mahmut Parlak, Turan Tufan, Jiekun Yang, Karol Szlachta, Xiaolong Wei, Rashad Mammadov, Mazhar Adli. Nat Methods 2017
156
66

Perturbing proteomes at single residue resolution using base editing.
Philippe C Després, Alexandre K Dubé, Motoaki Seki, Nozomu Yachie, Christian R Landry. Nat Commun 2020
14
66

Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions.
Y Bill Kim, Alexis C Komor, Jonathan M Levy, Michael S Packer, Kevin T Zhao, David R Liu. Nat Biotechnol 2017
357
55

Unconstrained genome targeting with near-PAMless engineered CRISPR-Cas9 variants.
Russell T Walton, Kathleen A Christie, Madelynn N Whittaker, Benjamin P Kleinstiver. Science 2020
209
55

Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.
Johnny H Hu, Shannon M Miller, Maarten H Geurts, Weixin Tang, Liwei Chen, Ning Sun, Christina M Zeina, Xue Gao, Holly A Rees, Zhi Lin,[...]. Nature 2018
632
55

Optimized base editors enable efficient editing in cells, organoids and mice.
Maria Paz Zafra, Emma M Schatoff, Alyna Katti, Miguel Foronda, Marco Breinig, Anabel Y Schweitzer, Amber Simon, Teng Han, Sukanya Goswami, Emma Montgomery,[...]. Nat Biotechnol 2018
137
55

Engineered CRISPR-Cas9 nuclease with expanded targeting space.
Hiroshi Nishimasu, Xi Shi, Soh Ishiguro, Linyi Gao, Seiichi Hirano, Sae Okazaki, Taichi Noda, Omar O Abudayyeh, Jonathan S Gootenberg, Hideto Mori,[...]. Science 2018
365
55

Improving cytidine and adenine base editors by expression optimization and ancestral reconstruction.
Luke W Koblan, Jordan L Doman, Christopher Wilson, Jonathan M Levy, Tristan Tay, Gregory A Newby, Juan Pablo Maianti, Aditya Raguram, David R Liu. Nat Biotechnol 2018
260
55

In vivo base editing of post-mitotic sensory cells.
Wei-Hsi Yeh, Hao Chiang, Holly A Rees, Albert S B Edge, David R Liu. Nat Commun 2018
102
44

Cytosine and adenine base editing of the brain, liver, retina, heart and skeletal muscle of mice via adeno-associated viruses.
Jonathan M Levy, Wei-Hsi Yeh, Nachiket Pendse, Jessie R Davis, Erin Hennessey, Rossano Butcher, Luke W Koblan, Jason Comander, Qin Liu, David R Liu. Nat Biomed Eng 2020
91
44

Cytosine base editor generates substantial off-target single-nucleotide variants in mouse embryos.
Erwei Zuo, Yidi Sun, Wu Wei, Tanglong Yuan, Wenqin Ying, Hao Sun, Liyun Yuan, Lars M Steinmetz, Yixue Li, Hui Yang. Science 2019
302
44

An APOBEC3A-Cas9 base editor with minimized bystander and off-target activities.
Jason M Gehrke, Oliver Cervantes, M Kendell Clement, Yuxuan Wu, Jing Zeng, Daniel E Bauer, Luca Pinello, J Keith Joung. Nat Biotechnol 2018
170
44

Adenine base editing in an adult mouse model of tyrosinaemia.
Chun-Qing Song, Tingting Jiang, Michelle Richter, Luke H Rhym, Luke W Koblan, Maria Paz Zafra, Emma M Schatoff, Jordan L Doman, Yueying Cao, Lukas E Dow,[...]. Nat Biomed Eng 2020
64
44

Treatment of a metabolic liver disease by in vivo genome base editing in adult mice.
Lukas Villiger, Hiu Man Grisch-Chan, Helen Lindsay, Femke Ringnalda, Chiara B Pogliano, Gabriella Allegri, Ralph Fingerhut, Johannes Häberle, Joao Matos, Mark D Robinson,[...]. Nat Med 2018
141
44

Engineered CRISPR-Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing.
Benjamin P Kleinstiver, Alexander A Sousa, Russell T Walton, Y Esther Tak, Jonathan Y Hsu, Kendell Clement, Moira M Welch, Joy E Horng, Jose Malagon-Lopez, Irene Scarfò,[...]. Nat Biotechnol 2019
162
44

Directed evolution of adenine base editors with increased activity and therapeutic application.
Nicole M Gaudelli, Dieter K Lam, Holly A Rees, Noris M Solá-Esteves, Luis A Barrera, David A Born, Aaron Edwards, Jason M Gehrke, Seung-Joo Lee, Alexander J Liquori,[...]. Nat Biotechnol 2020
83
44

Engineering of high-precision base editors for site-specific single nucleotide replacement.
Junjie Tan, Fei Zhang, Daniel Karcher, Ralph Bock. Nat Commun 2019
59
44

Circularly permuted and PAM-modified Cas9 variants broaden the targeting scope of base editors.
Tony P Huang, Kevin T Zhao, Shannon M Miller, Nicole M Gaudelli, Benjamin L Oakes, Christof Fellmann, David F Savage, David R Liu. Nat Biotechnol 2019
83
44

Adenine base editing in mouse embryos and an adult mouse model of Duchenne muscular dystrophy.
Seuk-Min Ryu, Taeyoung Koo, Kyoungmi Kim, Kayeong Lim, Gayoung Baek, Sang-Tae Kim, Heon Seok Kim, Da-Eun Kim, Hyunji Lee, Eugene Chung,[...]. Nat Biotechnol 2018
183
44

Search-and-replace genome editing without double-strand breaks or donor DNA.
Andrew V Anzalone, Peyton B Randolph, Jessie R Davis, Alexander A Sousa, Luke W Koblan, Jonathan M Levy, Peter J Chen, Christopher Wilson, Gregory A Newby, Aditya Raguram,[...]. Nature 2019
830
44


Efficient base editing with high precision in rabbits using YFE-BE4max.
Zhiquan Liu, Siyu Chen, Huanhuan Shan, Yingqi Jia, Mao Chen, Yuning Song, Liangxue Lai, Zhanjun Li. Cell Death Dis 2020
12
44

Determinants of Base Editing Outcomes from Target Library Analysis and Machine Learning.
Mandana Arbab, Max W Shen, Beverly Mok, Christopher Wilson, Żaneta Matuszek, Christopher A Cassa, David R Liu. Cell 2020
45
44

Cytosine base editors with minimized unguided DNA and RNA off-target events and high on-target activity.
Yi Yu, Thomas C Leete, David A Born, Lauren Young, Luis A Barrera, Seung-Joo Lee, Holly A Rees, Giuseppe Ciaramella, Nicole M Gaudelli. Nat Commun 2020
43
33

Evaluation and minimization of Cas9-independent off-target DNA editing by cytosine base editors.
Jordan L Doman, Aditya Raguram, Gregory A Newby, David R Liu. Nat Biotechnol 2020
105
33

Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors.
Julian Grünewald, Ronghao Zhou, Sara P Garcia, Sowmya Iyer, Caleb A Lareau, Martin J Aryee, J Keith Joung. Nature 2019
212
33

Methods and Applications of CRISPR-Mediated Base Editing in Eukaryotic Genomes.
Gaelen T Hess, Josh Tycko, David Yao, Michael C Bassik. Mol Cell 2017
125
33


Highly efficient and precise base editing in discarded human tripronuclear embryos.
Guanglei Li, Yajing Liu, Yanting Zeng, Jianan Li, Lijie Wang, Guang Yang, Dunjin Chen, Xiaoyun Shang, Jia Chen, Xingxu Huang,[...]. Protein Cell 2017
50
33

Directed evolution using dCas9-targeted somatic hypermutation in mammalian cells.
Gaelen T Hess, Laure Frésard, Kyuho Han, Cameron H Lee, Amy Li, Karlene A Cimprich, Stephen B Montgomery, Michael C Bassik. Nat Methods 2016
231
33

Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells.
Yunqing Ma, Jiayuan Zhang, Weijie Yin, Zhenchao Zhang, Yan Song, Xing Chang. Nat Methods 2016
215
33

Analysis and minimization of cellular RNA editing by DNA adenine base editors.
Holly A Rees, Christopher Wilson, Jordan L Doman, David R Liu. Sci Adv 2019
89
33

Genome-wide profiling of adenine base editor specificity by EndoV-seq.
Puping Liang, Xiaowei Xie, Shengyao Zhi, Hongwei Sun, Xiya Zhang, Yu Chen, Yuxi Chen, Yuanyan Xiong, Wenbin Ma, Dan Liu,[...]. Nat Commun 2019
55
33

CRISPR-Cas9 genome editing induces a p53-mediated DNA damage response.
Emma Haapaniemi, Sandeep Botla, Jenna Persson, Bernhard Schmierer, Jussi Taipale. Nat Med 2018
446
33

Highly efficient and precise base editing by engineered dCas9-guide tRNA adenosine deaminase in rats.
Yuanwu Ma, Lei Yu, Xu Zhang, Changpeng Xin, Shisheng Huang, Lin Bai, Wei Chen, Ran Gao, Jing Li, Shuo Pan,[...]. Cell Discov 2018
26
33

In utero CRISPR-mediated therapeutic editing of metabolic genes.
Avery C Rossidis, John D Stratigis, Alexandra C Chadwick, Heather A Hartman, Nicholas J Ahn, Haiying Li, Kshitiz Singh, Barbara E Coons, Li Li, Wenjian Lv,[...]. Nat Med 2018
93
33

RNA-guided human genome engineering via Cas9.
Prashant Mali, Luhan Yang, Kevin M Esvelt, John Aach, Marc Guell, James E DiCarlo, Julie E Norville, George M Church. Science 2013
33

Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery.
Steven Lin, Brett T Staahl, Ravi K Alla, Jennifer A Doudna. Elife 2014
615
33

A high-fidelity Cas9 mutant delivered as a ribonucleoprotein complex enables efficient gene editing in human hematopoietic stem and progenitor cells.
Christopher A Vakulskas, Daniel P Dever, Garrett R Rettig, Rolf Turk, Ashley M Jacobi, Michael A Collingwood, Nicole M Bode, Matthew S McNeill, Shuqi Yan, Joab Camarena,[...]. Nat Med 2018
262
33

Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity.
Alexis C Komor, Kevin T Zhao, Michael S Packer, Nicole M Gaudelli, Amanda L Waterbury, Luke W Koblan, Y Bill Kim, Ahmed H Badran, David R Liu. Sci Adv 2017
284
33

Continuous evolution of SpCas9 variants compatible with non-G PAMs.
Shannon M Miller, Tina Wang, Peyton B Randolph, Mandana Arbab, Max W Shen, Tony P Huang, Zaneta Matuszek, Gregory A Newby, Holly A Rees, David R Liu. Nat Biotechnol 2020
91
33

Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems.
Keiji Nishida, Takayuki Arazoe, Nozomu Yachie, Satomi Banno, Mika Kakimoto, Mayura Tabata, Masao Mochizuki, Aya Miyabe, Michihiro Araki, Kiyotaka Y Hara,[...]. Science 2016
540
33

Increasing targeting scope of adenosine base editors in mouse and rat embryos through fusion of TadA deaminase with Cas9 variants.
Lei Yang, Xiaohui Zhang, Liren Wang, Shuming Yin, Biyun Zhu, Ling Xie, Qiuhui Duan, Huiqiong Hu, Rui Zheng, Yu Wei,[...]. Protein Cell 2018
44
33

Directed evolution of CRISPR-Cas9 to increase its specificity.
Jungjoon K Lee, Euihwan Jeong, Joonsun Lee, Minhee Jung, Eunji Shin, Young-Hoon Kim, Kangin Lee, Inyoung Jung, Daesik Kim, Seokjoong Kim,[...]. Nat Commun 2018
161
33

Programmable base editing of zebrafish genome using a modified CRISPR-Cas9 system.
Yihan Zhang, Wei Qin, Xiaochan Lu, Jason Xu, Haigen Huang, Haipeng Bai, Song Li, Shuo Lin. Nat Commun 2017
105
33

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
33

CRISPR DNA base editors with reduced RNA off-target and self-editing activities.
Julian Grünewald, Ronghao Zhou, Sowmya Iyer, Caleb A Lareau, Sara P Garcia, Martin J Aryee, J Keith Joung. Nat Biotechnol 2019
107
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.