A citation-based method for searching scientific literature

Yihuan Lu, Chikara Dohno, Kazuhiko Nakatani. Biochem Biophys Res Commun 2020
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster.
DengGuo Wei, W David Wilson, Stephen Neidle. J Am Chem Soc 2013
36
100

A-DNA in solution as studied by diverse approaches.
V I Ivanov, Krylov DYu. Methods Enzymol 1992
62
100

Small molecule recognition of disease-relevant RNA structures.
Samantha M Meyer, Christopher C Williams, Yoshihiro Akahori, Toru Tanaka, Haruo Aikawa, Yuquan Tong, Jessica L Childs-Disney, Matthew D Disney. Chem Soc Rev 2020
19
100

1,3-Di(quinolin-2-yl)guanidine binds to GGCCCC hexanucleotide repeat DNA in C9ORF72.
Tomonori Shibata, Eitaro Murakami, Kazuhiko Nakatani. Bioorg Med Chem Lett 2018
3
100

RNA-mediated neurodegeneration caused by the fragile X premutation rCGG repeats in Drosophila.
Peng Jin, Daniela C Zarnescu, Fuping Zhang, Christopher E Pearson, John C Lucchesi, Kevin Moses, Stephen T Warren. Neuron 2003
254
100

A standard reference frame for the description of nucleic acid base-pair geometry.
W K Olson, M Bansal, S K Burley, R E Dickerson, M Gerstein, S C Harvey, U Heinemann, X J Lu, S Neidle, Z Shakked,[...]. J Mol Biol 2001
380
100

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
100

Repeat-Associated Non-ATG Translation: Molecular Mechanisms and Contribution to Neurological Disease.
Lien Nguyen, John Douglas Cleary, Laura P W Ranum. Annu Rev Neurosci 2019
31
100


Web 3DNA 2.0 for the analysis, visualization, and modeling of 3D nucleic acid structures.
Shuxiang Li, Wilma K Olson, Xiang-Jun Lu. Nucleic Acids Res 2019
47
100

LigPlot+: multiple ligand-protein interaction diagrams for drug discovery.
Roman A Laskowski, Mark B Swindells. J Chem Inf Model 2011
100

G-quadruplex-binding small molecules ameliorate C9orf72 FTD/ALS pathology in vitro and in vivo.
Roberto Simone, Rubika Balendra, Thomas G Moens, Elisavet Preza, Katherine M Wilson, Amanda Heslegrave, Nathan S Woodling, Teresa Niccoli, Javier Gilbert-Jaramillo, Samir Abdelkarim,[...]. EMBO Mol Med 2018
93
100

Insights into C9ORF72-Related ALS/FTD from Drosophila and iPSC Models.
Yeliz Yuva-Aydemir, Sandra Almeida, Fen-Biao Gao. Trends Neurosci 2018
29
100

Unraveling the Role of RNA Mediated Toxicity of C9orf72 Repeats in C9-FTD/ALS.
Vijay Kumar, Gulam M Hasan, Md Imtaiyaz Hassan. Front Neurosci 2017
28
100

Hexanucleotide repeats in ALS/FTD form length-dependent RNA foci, sequester RNA binding proteins, and are neurotoxic.
Youn-Bok Lee, Han-Jou Chen, João N Peres, Jorge Gomez-Deza, Jan Attig, Maja Stalekar, Claire Troakes, Agnes L Nishimura, Emma L Scotter, Caroline Vance,[...]. Cell Rep 2013
295
100

Drosophila melanogaster in the study of human neurodegeneration.
Frank Hirth. CNS Neurol Disord Drug Targets 2010
103
100


RNA Misprocessing in C9orf72-Linked Neurodegeneration.
Holly V Barker, Michael Niblock, Youn-Bok Lee, Christopher E Shaw, Jean-Marc Gallo. Front Cell Neurosci 2017
21
100

Water-mediated binding of agents that target the DNA minor groove.
Yang Liu, Arvind Kumar, Sabine Depauw, Raja Nhili, Marie-Hélène David-Cordonnier, Michael P Lee, Mohamed A Ismail, Abdelbasset A Farahat, Martial Say, Sarah Chackal-Catoen,[...]. J Am Chem Soc 2011
37
100

Structural Basis for Targeting T:T Mismatch with Triaminotriazine-Acridine Conjugate Induces a U-Shaped Head-to-Head Four-Way Junction in CTG Repeat DNA.
Ching-Ming Chien, Pei-Ching Wu, Roshan Satange, Cheng-Chung Chang, Zi-Lun Lai, Lauren D Hagler, Steven C Zimmerman, Ming-Hon Hou. J Am Chem Soc 2020
5
100

CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures.
Christophe Blanchet, Marco Pasi, Krystyna Zakrzewska, Richard Lavery. Nucleic Acids Res 2011
126
100

Gain of Toxicity from ALS/FTD-Linked Repeat Expansions in C9ORF72 Is Alleviated by Antisense Oligonucleotides Targeting GGGGCC-Containing RNAs.
Jie Jiang, Qiang Zhu, Tania F Gendron, Shahram Saberi, Melissa McAlonis-Downes, Amanda Seelman, Jennifer E Stauffer, Paymaan Jafar-Nejad, Kevin Drenner, Derek Schulte,[...]. Neuron 2016
270
100

Expanded GGGGCC repeat RNA associated with amyotrophic lateral sclerosis and frontotemporal dementia causes neurodegeneration.
Zihui Xu, Mickael Poidevin, Xuekun Li, Yujing Li, Liqi Shu, David L Nelson, He Li, Chadwick M Hales, Marla Gearing, Thomas S Wingo,[...]. Proc Natl Acad Sci U S A 2013
225
100

Rationally designed small molecules that target both the DNA and RNA causing myotonic dystrophy type 1.
Lien Nguyen, Long M Luu, Shaohong Peng, Julio F Serrano, H Y Edwin Chan, Steven C Zimmerman. J Am Chem Soc 2015
62
100

A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD.
Alan E Renton, Elisa Majounie, Adrian Waite, Javier Simón-Sánchez, Sara Rollinson, J Raphael Gibbs, Jennifer C Schymick, Hannu Laaksovirta, John C van Swieten, Liisa Myllykangas,[...]. Neuron 2011
100



The Hairpin Form of r(G4C2)exp in c9ALS/FTD Is Repeat-Associated Non-ATG Translated and a Target for Bioactive Small Molecules.
Zi-Fu Wang, Andrei Ursu, Jessica L Childs-Disney, Rea Guertler, Wang-Yong Yang, Viachaslau Bernat, Suzanne G Rzuczek, Rita Fuerst, Yong-Jie Zhang, Tania F Gendron,[...]. Cell Chem Biol 2019
30
100

Characterization of DNA G-quadruplex species forming from C9ORF72 G4C2-expanded repeats associated with amyotrophic lateral sclerosis and frontotemporal lobar degeneration.
Primož Šket, Jure Pohleven, Anja Kovanda, Maja Štalekar, Vera Župunski, Matja Zalar, Janez Plavec, Boris Rogelj. Neurobiol Aging 2015
49
100

Crystal structure of an RNA.DNA hybrid reveals intermolecular intercalation: dimer formation by base-pair swapping.
Gye Won Han, Mary L Kopka, David Langs, Michael R Sawaya, Richard E Dickerson. Proc Natl Acad Sci U S A 2003
16
100

Reduced C9orf72 protein levels in frontal cortex of amyotrophic lateral sclerosis and frontotemporal degeneration brain with the C9ORF72 hexanucleotide repeat expansion.
Adrian J Waite, Dirk Bäumer, Simon East, James Neal, Huw R Morris, Olaf Ansorge, Derek J Blake. Neurobiol Aging 2014
174
100

Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS.
Mariely DeJesus-Hernandez, Ian R Mackenzie, Bradley F Boeve, Adam L Boxer, Matt Baker, Nicola J Rutherford, Alexandra M Nicholson, NiCole A Finch, Heather Flynn, Jennifer Adamson,[...]. Neuron 2011
100


RNA toxicity from the ALS/FTD C9ORF72 expansion is mitigated by antisense intervention.
Christopher J Donnelly, Ping-Wu Zhang, Jacqueline T Pham, Aaron R Haeusler, Nipun A Mistry, Svetlana Vidensky, Elizabeth L Daley, Erin M Poth, Benjamin Hoover, Daniel M Fines,[...]. Neuron 2013
570
100


Actinomycin D Specifically Reduces Expanded CUG Repeat RNA in Myotonic Dystrophy Models.
Ruth B Siboni, Masayuki Nakamori, Stacey D Wagner, Adam J Struck, Leslie A Coonrod, Shanee A Harriott, Daniel M Cass, Matthew K Tanner, J Andrew Berglund. Cell Rep 2015
42
100


Discovery of a biomarker and lead small molecules to target r(GGGGCC)-associated defects in c9FTD/ALS.
Zhaoming Su, Yongjie Zhang, Tania F Gendron, Peter O Bauer, Jeannie Chew, Wang-Yong Yang, Erik Fostvedt, Karen Jansen-West, Veronique V Belzil, Pamela Desaro,[...]. Neuron 2014
212
100

Novel antibodies reveal presynaptic localization of C9orf72 protein and reduced protein levels in C9orf72 mutation carriers.
Petra Frick, Chantal Sellier, Ian R A Mackenzie, Chieh-Yu Cheng, Julie Tahraoui-Bories, Cecile Martinat, R Jeroen Pasterkamp, Johannes Prudlo, Dieter Edbauer, Mustapha Oulad-Abdelghani,[...]. Acta Neuropathol Commun 2018
50
100




Molecular Mechanisms of Neurodegeneration Related to C9orf72 Hexanucleotide Repeat Expansion.
Mirjana Babić Leko, Vera Župunski, Jason Kirincich, Dinko Smilović, Tibor Hortobágyi, Patrick R Hof, Goran Šimić. Behav Neurol 2019
25
100

Induced-Fit Recognition of CCG Trinucleotide Repeats by a Nickel-Chromomycin Complex Resulting in Large-Scale DNA Deformation.
Wen-Hsuan Tseng, Chung-Ke Chang, Pei-Ching Wu, Nien-Jen Hu, Gene-Hsiang Lee, Ching-Cherng Tzeng, Stephen Neidle, Ming-Hon Hou. Angew Chem Int Ed Engl 2017
14
100

A crystallographic map of the transition from B-DNA to A-DNA.
J M Vargason, K Henderson, P S Ho. Proc Natl Acad Sci U S A 2001
81
100

C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms RNA G-quadruplexes.
Pietro Fratta, Sarah Mizielinska, Andrew J Nicoll, Mire Zloh, Elizabeth M C Fisher, Gary Parkinson, Adrian M Isaacs. Sci Rep 2012
210
100






Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.