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Times Cited: 259
Times Cited: 259
Times Cited
Times Co-cited
Similarity
Architecture of the human interactome defines protein communities and disease networks.
Edward L Huttlin, Raphael J Bruckner, Joao A Paulo, Joe R Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P Gygi, Hannah Parzen,[...]. Nature 2017
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A proteome-scale map of the human interactome network.
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Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Edward L Huttlin, Raphael J Bruckner, Jose Navarrete-Perea, Joe R Cannon, Kurt Baltier, Fana Gebreab, Melanie P Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam,[...]. Cell 2021
Edward L Huttlin, Raphael J Bruckner, Jose Navarrete-Perea, Joe R Cannon, Kurt Baltier, Fana Gebreab, Melanie P Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam,[...]. Cell 2021
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The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Sandra Orchard, Mais Ammari, Bruno Aranda, Lionel Breuza, Leonardo Briganti, Fiona Broackes-Carter, Nancy H Campbell, Gayatri Chavali, Carol Chen, Noemi del-Toro,[...]. Nucleic Acids Res 2014
Sandra Orchard, Mais Ammari, Bruno Aranda, Lionel Breuza, Leonardo Briganti, Fiona Broackes-Carter, Nancy H Campbell, Gayatri Chavali, Carol Chen, Noemi del-Toro,[...]. Nucleic Acids Res 2014
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STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
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The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.
Damian Szklarczyk, Annika L Gable, Katerina C Nastou, David Lyon, Rebecca Kirsch, Sampo Pyysalo, Nadezhda T Doncheva, Marc Legeay, Tao Fang, Peer Bork,[...]. Nucleic Acids Res 2021
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The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions.
Rose Oughtred, Jennifer Rust, Christie Chang, Bobby-Joe Breitkreutz, Chris Stark, Andrew Willems, Lorrie Boucher, Genie Leung, Nadine Kolas, Frederick Zhang,[...]. Protein Sci 2021
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Highly accurate protein structure prediction with AlphaFold.
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Cytoscape: a software environment for integrated models of biomolecular interaction networks.
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The Database of Interacting Proteins: 2004 update.
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The mutational constraint spectrum quantified from variation in 141,456 humans.
Konrad J Karczewski, Laurent C Francioli, Grace Tiao, Beryl B Cummings, Jessica Alföldi, Qingbo Wang, Ryan L Collins, Kristen M Laricchia, Andrea Ganna, Daniel P Birnbaum,[...]. Nature 2020
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HIPPIE v2.0: enhancing meaningfulness and reliability of protein-protein interaction networks.
Gregorio Alanis-Lobato, Miguel A Andrade-Navarro, Martin H Schaefer. Nucleic Acids Res 2017
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Human Protein Reference Database--2009 update.
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The reactome pathway knowledgebase.
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Interactome3D: adding structural details to protein networks.
Roberto Mosca, Arnaud Céol, Patrick Aloy. Nat Methods 2013
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MINT, the molecular interaction database: 2012 update.
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NCBI GEO: archive for functional genomics data sets--update.
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The BioPlex Network: A Systematic Exploration of the Human Interactome.
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Network propagation: a universal amplifier of genetic associations.
Lenore Cowen, Trey Ideker, Benjamin J Raphael, Roded Sharan. Nat Rev Genet 2017
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Widespread macromolecular interaction perturbations in human genetic disorders.
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The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.
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WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
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HINT: High-quality protein interactomes and their applications in understanding human disease.
Jishnu Das, Haiyuan Yu. BMC Syst Biol 2012
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Structure-based prediction of protein-protein interactions on a genome-wide scale.
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Towards a proteome-scale map of the human protein-protein interaction network.
Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou,[...]. Nature 2005
Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou,[...]. Nature 2005
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Accurate prediction of protein structures and interactions using a three-track neural network.
Minkyung Baek, Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee, Jue Wang, Qian Cong, Lisa N Kinch, R Dustin Schaeffer,[...]. Science 2021
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A human interactome in three quantitative dimensions organized by stoichiometries and abundances.
Marco Y Hein, Nina C Hubner, Ina Poser, Jürgen Cox, Nagarjuna Nagaraj, Yusuke Toyoda, Igor A Gak, Ina Weisswange, Jörg Mansfeld, Frank Buchholz,[...]. Cell 2015
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COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference.
Takeshi Obayashi, Yuki Kagaya, Yuichi Aoki, Shu Tadaka, Kengo Kinoshita. Nucleic Acids Res 2019
Takeshi Obayashi, Yuki Kagaya, Yuichi Aoki, Shu Tadaka, Kengo Kinoshita. Nucleic Acids Res 2019
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The DisGeNET knowledge platform for disease genomics: 2019 update.
Janet Piñero, Juan Manuel Ramírez-Anguita, Josep Saüch-Pitarch, Francesco Ronzano, Emilio Centeno, Ferran Sanz, Laura I Furlong. Nucleic Acids Res 2020
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Disease networks. Uncovering disease-disease relationships through the incomplete interactome.
Jörg Menche, Amitabh Sharma, Maksim Kitsak, Susan Dina Ghiassian, Marc Vidal, Joseph Loscalzo, Albert-László Barabási. Science 2015
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Understanding multicellular function and disease with human tissue-specific networks.
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An automated method for finding molecular complexes in large protein interaction networks.
Gary D Bader, Christopher W V Hogue. BMC Bioinformatics 2003
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iRefIndex: a consolidated protein interaction database with provenance.
Sabry Razick, George Magklaras, Ian M Donaldson. BMC Bioinformatics 2008
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Diego Alonso-López, Francisco J Campos-Laborie, Miguel A Gutiérrez, Luke Lambourne, Michael A Calderwood, Marc Vidal, Javier De Las Rivas. Database (Oxford) 2019
Diego Alonso-López, Francisco J Campos-Laborie, Miguel A Gutiérrez, Luke Lambourne, Michael A Calderwood, Marc Vidal, Javier De Las Rivas. Database (Oxford) 2019
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InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation.
Karin Breuer, Amir K Foroushani, Matthew R Laird, Carol Chen, Anastasia Sribnaia, Raymond Lo, Geoffrey L Winsor, Robert E W Hancock, Fiona S L Brinkman, David J Lynn. Nucleic Acids Res 2013
Karin Breuer, Amir K Foroushani, Matthew R Laird, Carol Chen, Anastasia Sribnaia, Raymond Lo, Geoffrey L Winsor, Robert E W Hancock, Fiona S L Brinkman, David J Lynn. Nucleic Acids Res 2013
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A proximity-dependent biotinylation map of a human cell.
Christopher D Go, James D R Knight, Archita Rajasekharan, Bhavisha Rathod, Geoffrey G Hesketh, Kento T Abe, Ji-Young Youn, Payman Samavarchi-Tehrani, Hui Zhang, Lucie Y Zhu,[...]. Nature 2021
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High-quality binary protein interaction map of the yeast interactome network.
Haiyuan Yu, Pascal Braun, Muhammed A Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis,[...]. Science 2008
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Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.
Hyun-Woo Rhee, Peng Zou, Namrata D Udeshi, Jeffrey D Martell, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Science 2013
Hyun-Woo Rhee, Peng Zou, Namrata D Udeshi, Jeffrey D Martell, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Science 2013
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A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells.
Kyle J Roux, Dae In Kim, Manfred Raida, Brian Burke. J Cell Biol 2012
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Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Ron Edgar, Michael Domrachev, Alex E Lash. Nucleic Acids Res 2002
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LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.
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Transient protein-protein interactions: structural, functional, and network properties.
James R Perkins, Ilhem Diboun, Benoit H Dessailly, Jon G Lees, Christine Orengo. Structure 2010
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The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Damian Szklarczyk, John H Morris, Helen Cook, Michael Kuhn, Stefan Wyder, Milan Simonovic, Alberto Santos, Nadezhda T Doncheva, Alexander Roth, Peer Bork,[...]. Nucleic Acids Res 2017
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The IntAct molecular interaction database in 2012.
Samuel Kerrien, Bruno Aranda, Lionel Breuza, Alan Bridge, Fiona Broackes-Carter, Carol Chen, Margaret Duesbury, Marine Dumousseau, Marc Feuermann, Ursula Hinz,[...]. Nucleic Acids Res 2012
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KEGG: integrating viruses and cellular organisms.
Minoru Kanehisa, Miho Furumichi, Yoko Sato, Mari Ishiguro-Watanabe, Mao Tanabe. Nucleic Acids Res 2021
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The CRAPome: a contaminant repository for affinity purification-mass spectrometry data.
Dattatreya Mellacheruvu, Zachary Wright, Amber L Couzens, Jean-Philippe Lambert, Nicole A St-Denis, Tuo Li, Yana V Miteva, Simon Hauri, Mihaela E Sardiu, Teck Yew Low,[...]. Nat Methods 2013
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.