A citation-based method for searching scientific literature

Justina X Feng, Nicole C Riddle. Mamm Genome 2020
Times Cited: 5







List of co-cited articles
2 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Heterochromatin: Guardian of the Genome.
Aniek Janssen, Serafin U Colmenares, Gary H Karpen. Annu Rev Cell Dev Biol 2018
112
40


Histone methylation at H3K9: evidence for a restrictive epigenome in schizophrenia.
Kayla A Chase, David P Gavin, Alessandro Guidotti, Rajiv P Sharma. Schizophr Res 2013
55
20


Proteomics of nucleocytoplasmic partitioning.
Thao Nguyen, Nishant Pappireddi, Martin Wühr. Curr Opin Chem Biol 2019
8
20

MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics.
Andy T Kong, Felipe V Leprevost, Dmitry M Avtonomov, Dattatreya Mellacheruvu, Alexey I Nesvizhskii. Nat Methods 2017
214
20

Salt fractionation of nucleosomes for genome-wide profiling.
Sheila S Teves, Steven Henikoff. Methods Mol Biol 2012
16
20

Core Components of the Nuclear Pore Bind Distinct States of Chromatin and Contribute to Polycomb Repression.
Alejandro Gozalo, Ashley Duke, Yemin Lan, Pau Pascual-Garcia, Jessica A Talamas, Son C Nguyen, Parisha P Shah, Rajan Jain, Eric F Joyce, Maya Capelson. Mol Cell 2020
19
20

Epigenetic changes during aging and their reprogramming potential.
Alice E Kane, David A Sinclair. Crit Rev Biochem Mol Biol 2019
27
20

Pitfalls in histone propionylation during bottom-up mass spectrometry analysis.
Paulien Meert, Elisabeth Govaert, Ellen Scheerlinck, Maarten Dhaenens, Dieter Deforce. Proteomics 2015
22
20

Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance.
Nahid Iglesias, Joao A Paulo, Antonis Tatarakis, Xiaoyi Wang, Amanda L Edwards, Natarajan V Bhanu, Benjamin A Garcia, Wilhelm Haas, Steven P Gygi, Danesh Moazed. Mol Cell 2020
18
20

Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling.
Samuel A Myers, Jason Wright, Ryan Peckner, Brian T Kalish, Feng Zhang, Steven A Carr. Nat Methods 2018
74
20

Chromatin affinity purification and quantitative mass spectrometry defining the interactome of histone modification patterns.
Miroslav Nikolov, Alexandra Stützer, Kerstin Mosch, Andrius Krasauskas, Szabolcs Soeroes, Holger Stark, Henning Urlaub, Wolfgang Fischle. Mol Cell Proteomics 2011
60
20

X inactivation, differentiation, and DNA methylation.
A D Riggs. Cytogenet Cell Genet 1975
856
20

Targeting epigenetic readers in cancer.
Mark A Dawson, Tony Kouzarides, Brian J P Huntly. N Engl J Med 2012
259
20

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
20


Middle-down proteomics: a still unexploited resource for chromatin biology.
Simone Sidoli, Benjamin A Garcia. Expert Rev Proteomics 2017
39
20



GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy.
Yu Xue, Jian Ren, Xinjiao Gao, Changjiang Jin, Longping Wen, Xuebiao Yao. Mol Cell Proteomics 2008
468
20


An Interactive Database for the Assessment of Histone Antibody Specificity.
Scott B Rothbart, Bradley M Dickson, Jesse R Raab, Adrian T Grzybowski, Krzysztof Krajewski, Angela H Guo, Erin K Shanle, Steven Z Josefowicz, Stephen M Fuchs, C David Allis,[...]. Mol Cell 2015
90
20

Gene silencing in cancer in association with promoter hypermethylation.
James G Herman, Stephen B Baylin. N Engl J Med 2003
20

Technical advances in global DNA methylation analysis in human cancers.
Basudev Chowdhury, Il-Hoon Cho, Joseph Irudayaraj. J Biol Eng 2017
16
20

Metabolic labeling in middle-down proteomics allows for investigation of the dynamics of the histone code.
Simone Sidoli, Congcong Lu, Mariel Coradin, Xiaoshi Wang, Kelly R Karch, Chrystian Ruminowicz, Benjamin A Garcia. Epigenetics Chromatin 2017
21
20

Assaying chromatin structure and remodeling by restriction enzyme accessibility.
Kevin W Trotter, Trevor K Archer. Methods Mol Biol 2012
7
20




Methylated DNA immunoprecipitation.
Kelsie L Thu, Emily A Vucic, Jennifer Y Kennett, Cameron Heryet, Carolyn J Brown, Wan L Lam, Ian M Wilson. J Vis Exp 2009
17
20


Tackling aspecific side reactions during histone propionylation: The promise of reversing overpropionylation.
Paulien Meert, Sebastiaan Dierickx, Elisabeth Govaert, Laura De Clerck, Sander Willems, Maarten Dhaenens, Dieter Deforce. Proteomics 2016
15
20

Dynamics of replication-independent histone turnover in budding yeast.
Michael F Dion, Tommy Kaplan, Minkyu Kim, Stephen Buratowski, Nir Friedman, Oliver J Rando. Science 2007
392
20

A nano-chip-LC/MSn based strategy for characterization of modified nucleosides using reduced porous graphitic carbon as a stationary phase.
Anders Michael Bernth Giessing, Lincoln Greyson Scott, Finn Kirpekar. J Am Soc Mass Spectrom 2011
11
20

CoExpresso: assess the quantitative behavior of protein complexes in human cells.
Morteza H Chalabi, Vasileios Tsiamis, Lukas Käll, Fabio Vandin, Veit Schwämmle. BMC Bioinformatics 2019
4
25

Purification of proteins associated with specific genomic Loci.
Jérôme Déjardin, Robert E Kingston. Cell 2009
342
20


MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones.
Sara El Kennani, Annie Adrait, Alexey K Shaytan, Saadi Khochbin, Christophe Bruley, Anna R Panchenko, David Landsman, Delphine Pflieger, Jérôme Govin. Epigenetics Chromatin 2017
22
20

Transposons, stress and the functions of the deep genome.
Andrew A Bartlett, Richard G Hunter. Front Neuroendocrinol 2018
8
20

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.
Brendan MacLean, Daniela M Tomazela, Nicholas Shulman, Matthew Chambers, Gregory L Finney, Barbara Frewen, Randall Kern, David L Tabb, Daniel C Liebler, Michael J MacCoss. Bioinformatics 2010
20

Elucidating Combinatorial Chromatin States at Single-Nucleosome Resolution.
Ronen Sadeh, Roee Launer-Wachs, Hava Wandel, Ayelet Rahat, Nir Friedman. Mol Cell 2016
21
20

Drawbacks in the use of unconventional hydrophobic anhydrides for histone derivatization in bottom-up proteomics PTM analysis.
Simone Sidoli, Zuo-Fei Yuan, Shu Lin, Kelly Karch, Xiaoshi Wang, Natarajan Bhanu, Anna M Arnaudo, Laura-Mae Britton, Xing-Jun Cao, Michelle Gonzales-Cope,[...]. Proteomics 2015
28
20

Super-Resolution Imaging of Higher-Order Chromatin Structures at Different Epigenomic States in Single Mammalian Cells.
Jianquan Xu, Hongqiang Ma, Jingyi Jin, Shikhar Uttam, Rao Fu, Yi Huang, Yang Liu. Cell Rep 2018
63
20


Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers.
M L Bennink, S H Leuba, G H Leno, J Zlatanova, B G de Grooth, J Greve. Nat Struct Biol 2001
175
20


Quantitative proteomic analysis of chromatin-associated factors.
Yuzuru Shiio, Robert N Eisenman, Eugene C Yi, Sam Donohoe, David R Goodlett, Ruedi Aebersold. J Am Soc Mass Spectrom 2003
56
20




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.