A citation-based method for searching scientific literature

Juan Moriano, Cedric Boeckx. BMC Genomics 2020
Times Cited: 4







List of co-cited articles
22 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Many human accelerated regions are developmental enhancers.
John A Capra, Genevieve D Erwin, Gabriel McKinsey, John L R Rubenstein, Katherine S Pollard. Philos Trans R Soc Lond B Biol Sci 2013
94
75

Massively parallel discovery of human-specific substitutions that alter enhancer activity.
Severin Uebbing, Jake Gockley, Steven K Reilly, Acadia A Kocher, Evan Geller, Neeru Gandotra, Curt Scharfe, Justin Cotney, James P Noonan. Proc Natl Acad Sci U S A 2021
11
75

Reconstructing Denisovan Anatomy Using DNA Methylation Maps.
David Gokhman, Nadav Mishol, Marc de Manuel, David de Juan, Jonathan Shuqrun, Eran Meshorer, Tomas Marques-Bonet, Yoel Rak, Liran Carmel. Cell 2019
10
50

Reconstructing the DNA methylation maps of the Neandertal and the Denisovan.
David Gokhman, Eitan Lavi, Kay Prüfer, Mario F Fraga, José A Riancho, Janet Kelso, Svante Pääbo, Eran Meshorer, Liran Carmel. Science 2014
92
50

Human-chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution.
David Gokhman, Rachel M Agoglia, Maia Kinnebrew, Wei Gordon, Danqiong Sun, Vivek K Bajpai, Sahin Naqvi, Coral Chen, Anthony Chan, Chider Chen,[...]. Nat Genet 2021
6
50

Human-specific gain of function in a developmental enhancer.
Shyam Prabhakar, Axel Visel, Jennifer A Akiyama, Malak Shoukry, Keith D Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R Fitzpatrick, Veena Afzal,[...]. Science 2008
202
50

Differential DNA methylation of vocal and facial anatomy genes in modern humans.
David Gokhman, Malka Nissim-Rafinia, Lily Agranat-Tamir, Genevieve Housman, Raquel García-Pérez, Esther Lizano, Olivia Cheronet, Swapan Mallick, Maria A Nieves-Colón, Heng Li,[...]. Nat Commun 2020
14
50

The evolution of modern human brain shape.
Simon Neubauer, Jean-Jacques Hublin, Philipp Gunz. Sci Adv 2018
67
50

Novel primate miRNAs coevolved with ancient target genes in germinal zone-specific expression patterns.
Mary L Arcila, Marion Betizeau, Xiaolu A Cambronne, Elmer Guzman, Nathalie Doerflinger, Frantz Bouhallier, Hongjun Zhou, Bian Wu, Neha Rani, Danielle S Bassett,[...]. Neuron 2014
51
50

Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development.
Tomasz J Nowakowski, Neha Rani, Mahdi Golkaram, Hongjun R Zhou, Beatriz Alvarado, Kylie Huch, Jay A West, Anne Leyrat, Alex A Pollen, Arnold R Kriegstein,[...]. Nat Neurosci 2018
56
50

Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal.
Simone A Fietz, Robert Lachmann, Holger Brandl, Martin Kircher, Nikolay Samusik, Roland Schröder, Naharajan Lakshmanaperumal, Ian Henry, Johannes Vogt, Axel Riehn,[...]. Proc Natl Acad Sci U S A 2012
186
50

An early cell shape transition drives evolutionary expansion of the human forebrain.
Silvia Benito-Kwiecinski, Stefano L Giandomenico, Magdalena Sutcliffe, Erlend S Riis, Paula Freire-Pritchett, Iva Kelava, Stephanie Wunderlich, Ulrich Martin, Gregory A Wray, Kate McDole,[...]. Cell 2021
24
50

Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior.
Ryan N Doan, Byoung-Il Bae, Beatriz Cubelos, Cindy Chang, Amer A Hossain, Samira Al-Saad, Nahit M Mukaddes, Ozgur Oner, Muna Al-Saffar, Soher Balkhy,[...]. Cell 2016
112
50

Evolution of the Human Nervous System Function, Structure, and Development.
André M M Sousa, Kyle A Meyer, Gabriel Santpere, Forrest O Gulden, Nenad Sestan. Cell 2017
136
50

An RNA gene expressed during cortical development evolved rapidly in humans.
Katherine S Pollard, Sofie R Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel,[...]. Nature 2006
558
50

Primate cell fusion disentangles gene regulatory divergence in neurodevelopment.
Rachel M Agoglia, Danqiong Sun, Fikri Birey, Se-Jin Yoon, Yuki Miura, Karen Sabatini, Sergiu P Pașca, Hunter B Fraser. Nature 2021
10
50

Accelerated evolution of conserved noncoding sequences in humans.
Shyam Prabhakar, James P Noonan, Svante Pääbo, Edward M Rubin. Science 2006
249
50

Human evolved regulatory elements modulate genes involved in cortical expansion and neurodevelopmental disease susceptibility.
Hyejung Won, Jerry Huang, Carli K Opland, Chris L Hartl, Daniel H Geschwind. Nat Commun 2019
33
50

Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex.
J Lomax Boyd, Stephanie L Skove, Jeremy P Rouanet, Louis-Jan Pilaz, Tristan Bepler, Raluca Gordân, Gregory A Wray, Debra L Silver. Curr Biol 2015
110
50

2D and 3D Stem Cell Models of Primate Cortical Development Identify Species-Specific Differences in Progenitor Behavior Contributing to Brain Size.
Tomoki Otani, Maria C Marchetto, Fred H Gage, Benjamin D Simons, Frederick J Livesey. Cell Stem Cell 2016
146
50

A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA.
Neha Rani, Tomasz J Nowakowski, Hongjun Zhou, Sirie E Godshalk, Véronique Lisi, Arnold R Kriegstein, Kenneth S Kosik. Neuron 2016
83
50

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
25

Chimpanzee genomic diversity reveals ancient admixture with bonobos.
Marc de Manuel, Martin Kuhlwilm, Peter Frandsen, Vitor C Sousa, Tariq Desai, Javier Prado-Martinez, Jessica Hernandez-Rodriguez, Isabelle Dupanloup, Oscar Lao, Pille Hallast,[...]. Science 2016
105
25

Gene co-option in physiological and morphological evolution.
John R True, Sean B Carroll. Annu Rev Cell Dev Biol 2002
245
25

Regulation of the Development and Function of B Cells by ZBTB Transcription Factors.
Can Zhu, Ge Chen, Ying Zhao, Xiao-Ming Gao, Jun Wang. Front Immunol 2018
23
25

ZNF281-miR-543 Feedback Loop Regulates Transforming Growth Factor-β-Induced Breast Cancer Metastasis.
Wei Ji, Qiang Mu, Xiang-Yu Liu, Xu-Chen Cao, Yue Yu. Mol Ther Nucleic Acids 2020
5
25


Modeling 3D facial shape from DNA.
Peter Claes, Denise K Liberton, Katleen Daniels, Kerri Matthes Rosana, Ellen E Quillen, Laurel N Pearson, Brian McEvoy, Marc Bauchet, Arslan A Zaidi, Wei Yao,[...]. PLoS Genet 2014
100
25

Cis and trans effects differentially contribute to the evolution of promoters and enhancers.
Kaia Mattioli, Winona Oliveros, Chiara Gerhardinger, Daniel Andergassen, Philipp G Maass, John L Rinn, Marta Melé. Genome Biol 2020
3
33

Selective regulation of Mmp13 by 1,25(OH)2D3, PTH, and Osterix through distal enhancers.
Mark B Meyer, Nancy A Benkusky, Melda Onal, J Wesley Pike. J Steroid Biochem Mol Biol 2016
15
25

dbSNP: the NCBI database of genetic variation.
S T Sherry, M H Ward, M Kholodov, J Baker, L Phan, E M Smigielski, K Sirotkin. Nucleic Acids Res 2001
25

GENCODE reference annotation for the human and mouse genomes.
Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane Loveland, Jonathan M Mudge, Cristina Sisu, James Wright, Joel Armstrong,[...]. Nucleic Acids Res 2019
823
25

Inferred divergent gene regulation in archaic hominins reveals potential phenotypic differences.
Laura L Colbran, Eric R Gamazon, Dan Zhou, Patrick Evans, Nancy J Cox, John A Capra. Nat Ecol Evol 2019
14
25

NF-Y and SP transcription factors - New insights in a long-standing liaison.
Guntram Suske. Biochim Biophys Acta Gene Regul Mech 2017
20
25

Selection against archaic hominin genetic variation in regulatory regions.
Natalie Telis, Robin Aguilar, Kelley Harris. Nat Ecol Evol 2020
5
25

De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements.
Felix Schlesinger, Andrew D Smith, Thomas R Gingeras, Gregory J Hannon, Emily Hodges. Genome Res 2013
46
25

Paternal Low-Level Mosaicism-Caused SATB2-Associated Syndrome.
Yeqing Qian, Jiao Liu, Yanmei Yang, Min Chen, Chunlei Jin, Penglong Chen, Yongliang Lei, Hangyi Pan, Minyue Dong. Front Genet 2019
3
33

Functional characterization of enhancer evolution in the primate lineage.
Jason C Klein, Aidan Keith, Vikram Agarwal, Timothy Durham, Jay Shendure. Genome Biol 2018
15
25

VISTA Enhancer Browser--a database of tissue-specific human enhancers.
Axel Visel, Simon Minovitsky, Inna Dubchak, Len A Pennacchio. Nucleic Acids Res 2007
622
25

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.
Molly Gasperini, Andrew J Hill, José L McFaline-Figueroa, Beth Martin, Seungsoo Kim, Melissa D Zhang, Dana Jackson, Anh Leith, Jacob Schreiber, William S Noble,[...]. Cell 2019
133
25

Loss of Satb2 in the Cortex and Hippocampus Leads to Abnormal Behaviors in Mice.
Qiong Zhang, Ying Huang, Lei Zhang, Yu-Qiang Ding, Ning-Ning Song. Front Mol Neurosci 2019
15
25

Emerging roles of Egr2 and Egr3 in the control of systemic autoimmunity.
Kaoru Morita, Tomohisa Okamura, Shuji Sumitomo, Yukiko Iwasaki, Keishi Fujio, Kazuhiko Yamamoto. Rheumatology (Oxford) 2016
10
25


Role of HOXA9 and VEZF1 in endothelial biology.
Marco Bruderer, Mauro Alini, Martin J Stoddart. J Vasc Res 2013
18
25

Something old, something borrowed: admixture and adaptation in human evolution.
Michael Dannemann, Fernando Racimo. Curr Opin Genet Dev 2018
34
25


Towards a comprehensive catalogue of validated and target-linked human enhancers.
Molly Gasperini, Jacob M Tome, Jay Shendure. Nat Rev Genet 2020
69
25

Limits of long-term selection against Neandertal introgression.
Martin Petr, Svante Pääbo, Janet Kelso, Benjamin Vernot. Proc Natl Acad Sci U S A 2019
56
25



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.