A citation-based method for searching scientific literature

Martin Philpott, Adam P Cribbs, Tom Brown, Tom Brown, Udo Oppermann. Curr Opin Chem Biol 2020
Times Cited: 9







List of co-cited articles
27 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Spatial proteomics: a powerful discovery tool for cell biology.
Emma Lundberg, Georg H H Borner. Nat Rev Mol Cell Biol 2019
99
22

Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity.
Stephen J Clark, Heather J Lee, Sébastien A Smallwood, Gavin Kelsey, Wolf Reik. Genome Biol 2016
160
22

Single-cell chromatin accessibility reveals principles of regulatory variation.
Jason D Buenrostro, Beijing Wu, Ulrike M Litzenburger, Dave Ruff, Michael L Gonzales, Michael P Snyder, Howard Y Chang, William J Greenleaf. Nature 2015
817
22

Employing core regulatory circuits to define cell identity.
Nathalia Almeida, Matthew W H Chung, Elena M Drudi, Elise N Engquist, Eva Hamrud, Abigail Isaacson, Victoria S K Tsang, Fiona M Watt, Francesca M Spagnoli. EMBO J 2021
2
100

NanoReviser: An Error-Correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm.
Luotong Wang, Li Qu, Longshu Yang, Yiying Wang, Huaiqiu Zhu. Front Genet 2020
9
22

Direct RNA sequencing.
Fatih Ozsolak, Adam R Platt, Dan R Jones, Jeffrey G Reifenberger, Lauryn E Sass, Peter McInerney, John F Thompson, Jayson Bowers, Mirna Jarosz, Patrice M Milos. Nature 2009
268
22

The Versatility of SMRT Sequencing.
Matthew S Hestand, Adam Ameur. Genes (Basel) 2019
5
40

Genome of the Single Human Chromosome 18 as a "Gold Standard" for Its Transcriptome.
Ekaterina Ilgisonis, Nikita Vavilov, Elena Ponomarenko, Andrey Lisitsa, Ekaterina Poverennaya, Victor Zgoda, Sergey Radko, Alexander Archakov. Front Genet 2021
4
50

Machine Intelligence in Single-Cell Data Analysis: Advances and New Challenges.
Jiajia Liu, Zhiwei Fan, Weiling Zhao, Xiaobo Zhou. Front Genet 2021
4
50

4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans.
Robert A Gaultney, Antony T Vincent, Céline Lorioux, Jean-Yves Coppée, Odile Sismeiro, Hugo Varet, Rachel Legendre, Charlotte A Cockram, Frédéric J Veyrier, Mathieu Picardeau. Nucleic Acids Res 2020
4
50


Detecting and phasing minor single-nucleotide variants from long-read sequencing data.
Zhixing Feng, Jose C Clemente, Brandon Wong, Eric E Schadt. Nat Commun 2021
3
66

A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis.
Aleksandr Bobrovskikh, Alexey Doroshkov, Stefano Mazzoleni, Fabrizio Cartenì, Francesco Giannino, Ulyana Zubairova. Front Genet 2021
3
66

Harnessing Current Knowledge of DNA N6-Methyladenosine From Model Plants for Non-model Crops.
Sadaruddin Chachar, Jingrong Liu, Pingxian Zhang, Adeel Riaz, Changfei Guan, Shuyuan Liu. Front Genet 2021
4
50

Multi-omics data integration considerations and study design for biological systems and disease.
Stefan Graw, Kevin Chappell, Charity L Washam, Allen Gies, Jordan Bird, Michael S Robeson, Stephanie D Byrum. Mol Omics 2021
13
22

Single-cell multimodal omics: the power of many.
Chenxu Zhu, Sebastian Preissl, Bing Ren. Nat Methods 2020
82
22

Elucidation of Biological Networks across Complex Diseases Using Single-Cell Omics.
Yang Li, Anjun Ma, Ewy A Mathé, Lang Li, Bingqiang Liu, Qin Ma. Trends Genet 2020
8
25

Evolution of Drug-Resistant Mycobacterium tuberculosis Strains and Their Adaptation to the Human Lung Environment.
Anna Allué-Guardia, Juan I García, Jordi B Torrelles. Front Microbiol 2021
7
28

Nanopore sequencing and assembly of a human genome with ultra-long reads.
Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes,[...]. Nat Biotechnol 2018
657
22

Recent Advances in Integrative Multi-Omics Research in Breast and Ovarian Cancer.
Christen A Khella, Gaurav A Mehta, Rushabh N Mehta, Michael L Gatza. J Pers Med 2021
4
50


Potential of whole-genome sequencing-based pharmacogenetic profiling.
Sylvan Manuel Caspar, Timo Schneider, Patricia Stoll, Janine Meienberg, Gabor Matyas. Pharmacogenomics 2021
2
100


Opportunities and challenges in long-read sequencing data analysis.
Shanika L Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E Ritchie, Quentin Gouil. Genome Biol 2020
182
22

Streamlining data-intensive biology with workflow systems.
Taylor Reiter, Phillip T Brooks, Luiz Irber, Shannon E K Joslin, Charles M Reid, Camille Scott, C Titus Brown, N Tessa Pierce-Ward. Gigascience 2021
8
25

TALC: Transcript-level Aware Long-read Correction.
Lucile Broseus, Aubin Thomas, Andrew J Oldfield, Dany Severac, Emeric Dubois, William Ritchie. Bioinformatics 2020
8
25


A three-dimensional human model of the fibroblast activation that accompanies bronchopulmonary dysplasia identifies Notch-mediated pathophysiology.
Jennifer M S Sucre, Dan Wilkinson, Preethi Vijayaraj, Manash Paul, Bruce Dunn, Jackelyn A Alva-Ornelas, Brigitte N Gomperts. Am J Physiol Lung Cell Mol Physiol 2016
24
11

Hyperoxia depletes (6R)-5,6,7,8-tetrahydrobiopterin levels in the neonatal retina: implications for nitric oxide synthase function in retinopathy.
Kevin S Edgar, Nuria Matesanz, Tom A Gardiner, Zvonimir S Katusic, Denise M McDonald. Am J Pathol 2015
12
11

Myocardial cell sheet therapy and cardiac function.
Jun Fujita, Yuji Itabashi, Tomohisa Seki, Shugo Tohyama, Yuichi Tamura, Motoaki Sano, Keiichi Fukuda. Am J Physiol Heart Circ Physiol 2012
31
11

Metabolic Imaging at the Single-Cell Scale: Recent Advances in Mass Spectrometry Imaging.
Ian S Gilmore, Sven Heiles, Cornelius L Pieterse. Annu Rev Anal Chem (Palo Alto Calif) 2019
62
11

Powering ex vivo tissue models in microfluidic systems.
Ian C McLean, Luke A Schwerdtfeger, Stuart A Tobet, Charles S Henry. Lab Chip 2018
28
11

A chamber for the perfusion of in vitro tissue with multiple solutions.
Matthew G Thomas, James A Covington, Mark J Wall. J Neurophysiol 2013
4
25

Cutting Thick Sections Using a Vibratome.
Angelo Iulianella. Cold Spring Harb Protoc 2017
4
25

Airway smooth muscle photorelaxation via opsin receptor activation.
Peter D Yim, George Gallos, Jose F Perez-Zoghbi, Yi Zhang, Dingbang Xu, Amy Wu, Dan E Berkowitz, Charles W Emala. Am J Physiol Lung Cell Mol Physiol 2019
12
11


Single-Cell Genomics.
Carmela Paolillo, Eric Londin, Paolo Fortina. Clin Chem 2019
17
11

Biomechanical properties of decellularized porcine common carotid arteries.
Sylvain Roy, Paolo Silacci, Nikolaos Stergiopulos. Am J Physiol Heart Circ Physiol 2005
79
11

Recent advances in our understanding of the mechanisms of lung alveolarization and bronchopulmonary dysplasia.
Ettore Lignelli, Francesco Palumbo, Despoina Myti, Rory E Morty. Am J Physiol Lung Cell Mol Physiol 2019
53
11

Functional genomics analysis of human colon organoids identifies key transcription factors.
Shiyi Yin, Greeshma Ray, Jenny L Kerschner, Shuyu Hao, Aura Perez, Mitchell L Drumm, James A Browne, Shih-Hsing Leir, Michelle Longworth, Ann Harris. Physiol Genomics 2020
6
16



Long-term adult human brain slice cultures as a model system to study human CNS circuitry and disease.
Niklas Schwarz, Betül Uysal, Marc Welzer, Jacqueline C Bahr, Nikolas Layer, Heidi Löffler, Kornelijus Stanaitis, Harshad Pa, Yvonne G Weber, Ulrike Bs Hedrich,[...]. Elife 2019
15
11

Distinct niches within the extracellular matrix dictate fibroblast function in (cell free) 3D lung tissue cultures.
Gerald Burgstaller, Arunima Sengupta, Sarah Vierkotten, Gerhard Preissler, Michael Lindner, Jürgen Behr, Melanie Königshoff, Oliver Eickelberg. Am J Physiol Lung Cell Mol Physiol 2018
16
11

Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.
Samuel A Neymotin, Benjamin A Suter, Salvador Dura-Bernal, Gordon M G Shepherd, Michele Migliore, William W Lytton. J Neurophysiol 2017
12
11

Bioenergetics underlying single-cell migration on aligned nanofiber scaffolds.
Abinash Padhi, Alexander H Thomson, Justin B Perry, Grace N Davis, Ryan P McMillan, Sandra Loesgen, Elizabeth N Kaweesa, Rakesh Kapania, Amrinder S Nain, David A Brown. Am J Physiol Cell Physiol 2020
8
12

Brain Organoids and the Study of Neurodevelopment.
Cleber A Trujillo, Alysson R Muotri. Trends Mol Med 2018
36
11

Human Brain Slice Culture: A Useful Tool to Study Brain Disorders and Potential Therapeutic Compounds.
Xin-Rui Qi, Ronald W H Verwer, Ai-Min Bao, Rawien A Balesar, Sabina Luchetti, Jiang-Ning Zhou, Dick F Swaab. Neurosci Bull 2019
9
11


Establishment of a novel three-dimensional primary culture model for hippocampal neurogenesis.
Tatsuya Usui, Masashi Sakurai, Hideyoshi Kawasaki, Takashi Ohama, Hideyuki Yamawaki, Koichi Sato. Physiol Rep 2017
5
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.