A citation-based method for searching scientific literature

Eddie K K Ip, Clinton Hadinata, Joshua W K Ho, Eleni Giannoulatou. Bioinformatics 2020
Times Cited: 2







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A universal SNP and small-indel variant caller using deep neural networks.
Ryan Poplin, Pi-Chuan Chang, David Alexander, Scott Schwartz, Thomas Colthurst, Alexander Ku, Dan Newburger, Jojo Dijamco, Nam Nguyen, Pegah T Afshar,[...]. Nat Biotechnol 2018
194
100

novoCaller: a Bayesian network approach for de novo variant calling from pedigree and population sequence data.
Anwoy Kumar Mohanty, Dana Vuzman, Laurent Francioli, Christopher Cassa, Agnes Toth-Petroczy, Shamil Sunyaev. Bioinformatics 2019
2
50

Investigation of candidate genes of non-syndromic cleft lip with or without cleft palate, using both case-control and family-based association studies.
Xing Ge, Jia-Wei Hong, Jun-Yu Shen, Zheng Li, Rui Zhang, Qi Wang, Zhen Ding, Gang Chen, Li-Chun Xu. Medicine (Baltimore) 2019
2
50

Clinical application of whole-exome sequencing across clinical indications.
Kyle Retterer, Jane Juusola, Megan T Cho, Patrik Vitazka, Francisca Millan, Federica Gibellini, Annette Vertino-Bell, Nizar Smaoui, Julie Neidich, Kristin G Monaghan,[...]. Genet Med 2016
458
50

New insights into the generation and role of de novo mutations in health and disease.
Rocio Acuna-Hidalgo, Joris A Veltman, Alexander Hoischen. Genome Biol 2016
164
50

Safeguarding the future of genomic research in South Africa: Broad consent and the Protection of Personal Information Act No. 4 of 2013.
C Staunton, R Adams, M Botes, E S Dove, L Horn, M Labuschaigne, G Loots, S Mahomed, J Makuba, A Olckers,[...]. S Afr Med J 2019
6
50

Applications of targeted gene capture and next-generation sequencing technologies in studies of human deafness and other genetic disabilities.
Xi Lin, Wenxue Tang, Shoeb Ahmad, Jingqiao Lu, Candice C Colby, Jason Zhu, Qing Yu. Hear Res 2012
67
50


Variation in genome-wide mutation rates within and between human families.
Donald F Conrad, Jonathan E M Keebler, Mark A DePristo, Sarah J Lindsay, Yujun Zhang, Ferran Casals, Youssef Idaghdour, Chris L Hartl, Carlos Torroja, Kiran V Garimella,[...]. Nat Genet 2011
345
50

Whole-exome analysis of a Li-Fraumeni family trio with a novel TP53 PRD mutation and anticipation profile.
Sara Franceschi, Laura Spugnesi, Paolo Aretini, Francesca Lessi, Rosa Scarpitta, Alvaro Galli, Caterina Congregati, Maria Adelaide Caligo, Chiara Maria Mazzanti. Carcinogenesis 2017
5
50

Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants.
Fu-Yuan Zhu, Mo-Xian Chen, Neng-Hui Ye, Wang-Min Qiao, Bei Gao, Wai-Ki Law, Yuan Tian, Dong Zhang, Di Zhang, Tie-Yuan Liu,[...]. Plant Methods 2018
45
50

Diagnosis of an imprinted-gene syndrome by a novel bioinformatics analysis of whole-genome sequences from a family trio.
Dale L Bodian, Benjamin D Solomon, Alina Khromykh, Dzung C Thach, Ramaswamy K Iyer, Kathleen Link, Robin L Baker, Rajiv Baveja, Joseph G Vockley, John E Niederhuber. Mol Genet Genomic Med 2014
13
50

FamPipe: An Automatic Analysis Pipeline for Analyzing Sequencing Data in Families for Disease Studies.
Ren-Hua Chung, Wei-Yun Tsai, Chen-Yu Kang, Po-Ju Yao, Hui-Ju Tsai, Chia-Hsiang Chen. PLoS Comput Biol 2016
4
50

Standards and Guidelines for Validating Next-Generation Sequencing Bioinformatics Pipelines: A Joint Recommendation of the Association for Molecular Pathology and the College of American Pathologists.
Somak Roy, Christopher Coldren, Arivarasan Karunamurthy, Nefize S Kip, Eric W Klee, Stephen E Lincoln, Annette Leon, Mrudula Pullambhatla, Robyn L Temple-Smolkin, Karl V Voelkerding,[...]. J Mol Diagn 2018
154
50

Linkage analysis in the next-generation sequencing era.
Joan E Bailey-Wilson, Alexander F Wilson. Hum Hered 2011
67
50

Exome sequencing generates high quality data in non-target regions.
Yan Guo, Jirong Long, Jing He, Chung-I Li, Qiuyin Cai, Xiao-Ou Shu, Wei Zheng, Chun Li. BMC Genomics 2012
82
50

Genetic linkage studies.
M Dawn Teare, Jennifer H Barrett. Lancet 2005
102
50

Public data archives for genomic structural variation.
Deanna M Church, Ilkka Lappalainen, Tam P Sneddon, Jonathan Hinton, Michael Maguire, John Lopez, John Garner, Justin Paschall, Michael DiCuccio, Eugene Yaschenko,[...]. Nat Genet 2010
63
50

Next-generation sequencing technologies and their application to the study and control of bacterial infections.
J Besser, H A Carleton, P Gerner-Smidt, R L Lindsey, E Trees. Clin Microbiol Infect 2018
146
50

Standards and Guidelines for the Interpretation and Reporting of Sequence Variants in Cancer: A Joint Consensus Recommendation of the Association for Molecular Pathology, American Society of Clinical Oncology, and College of American Pathologists.
Marilyn M Li, Michael Datto, Eric J Duncavage, Shashikant Kulkarni, Neal I Lindeman, Somak Roy, Apostolia M Tsimberidou, Cindy L Vnencak-Jones, Daynna J Wolff, Anas Younes,[...]. J Mol Diagn 2017
590
50

A family-based genome-wide association study of chronic rhinosinusitis with nasal polyps implicates several genes in the disease pathogenesis.
Anton Bohman, Julius Juodakis, Martin Oscarsson, Jonas Bacelis, Mats Bende, Ă…sa Torinsson Naluai. PLoS One 2017
9
50

Family-Based Benchmarking of Copy Number Variation Detection Software.
Marcel Elie Nutsua, Annegret Fischer, Almut Nebel, Sylvia Hofmann, Stefan Schreiber, Michael Krawczak, Michael Nothnagel. PLoS One 2015
5
50

Recent developments in genetic/genomic medicine.
Rachel H Horton, Anneke M Lucassen. Clin Sci (Lond) 2019
27
50

The Ensembl Variant Effect Predictor.
William McLaren, Laurent Gil, Sarah E Hunt, Harpreet Singh Riat, Graham R S Ritchie, Anja Thormann, Paul Flicek, Fiona Cunningham. Genome Biol 2016
50

Next-generation sequencing: from basic research to diagnostics.
Karl V Voelkerding, Shale A Dames, Jacob D Durtschi. Clin Chem 2009
375
50

Whole-Exome Sequencing and Targeted Copy Number Analysis in Primary Ciliary Dyskinesia.
Christian R Marshall, Stephen W Scherer, Maimoona A Zariwala, Lynette Lau, Tara A Paton, Tracy Stockley, Rebekah K Jobling, Peter N Ray, Michael R Knowles, David A Hall,[...]. G3 (Bethesda) 2015
40
50

Next generation sequencing technology: Advances and applications.
H P J Buermans, J T den Dunnen. Biochim Biophys Acta 2014
272
50

Using familial information for variant filtering in high-throughput sequencing studies.
Melanie Bahlo, Rick Tankard, Vesna Lukic, Karen L Oliver, Katherine R Smith. Hum Genet 2014
9
50


Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.
David T Miller, Margaret P Adam, Swaroop Aradhya, Leslie G Biesecker, Arthur R Brothman, Nigel P Carter, Deanna M Church, John A Crolla, Evan E Eichler, Charles J Epstein,[...]. Am J Hum Genet 2010
50

Investigating reproducibility and tracking provenance - A genomic workflow case study.
Sehrish Kanwal, Farah Zaib Khan, Andrew Lonie, Richard O Sinnott. BMC Bioinformatics 2017
29
50

Assessing the impact of population stratification on genetic association studies.
Matthew L Freedman, David Reich, Kathryn L Penney, Gavin J McDonald, Andre A Mignault, Nick Patterson, Stacey B Gabriel, Eric J Topol, Jordan W Smoller, Carlos N Pato,[...]. Nat Genet 2004
544
50

Whole-exome re-sequencing in a family quartet identifies POP1 mutations as the cause of a novel skeletal dysplasia.
Evgeny A Glazov, Andreas Zankl, Marina Donskoi, Tony J Kenna, Gethin P Thomas, Graeme R Clark, Emma L Duncan, Matthew A Brown. PLoS Genet 2011
53
50

Principal components analysis corrects for stratification in genome-wide association studies.
Alkes L Price, Nick J Patterson, Robert M Plenge, Michael E Weinblatt, Nancy A Shadick, David Reich. Nat Genet 2006
50

Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.
Neha Kulkarni, Luca Alessandrì, Riccardo Panero, Maddalena Arigoni, Martina Olivero, Giulio Ferrero, Francesca Cordero, Marco Beccuti, Raffaele A Calogero. BMC Bioinformatics 2018
24
50

Identification of de novo germline mutations and causal genes for sporadic diseases using trio-based whole-exome/genome sequencing.
Zi-Bing Jin, Zhongshan Li, Zhenwei Liu, Yi Jiang, Xue-Bi Cai, Jinyu Wu. Biol Rev Camb Philos Soc 2018
17
50

CADD: predicting the deleteriousness of variants throughout the human genome.
Philipp Rentzsch, Daniela Witten, Gregory M Cooper, Jay Shendure, Martin Kircher. Nucleic Acids Res 2019
909
50

Using VarScan 2 for Germline Variant Calling and Somatic Mutation Detection.
Daniel C Koboldt, David E Larson, Richard K Wilson. Curr Protoc Bioinformatics 2013
112
50

Family studies to find rare high risk variants in migraine.
Rikke Dyhr Hansen, Anne Francke Christensen, Jes Olesen. J Headache Pain 2017
12
50

The Human Gene Mutation Database: providing a comprehensive central mutation database for molecular diagnostics and personalized genomics.
Peter D Stenson, Edward V Ball, Katy Howells, Andrew D Phillips, Matthew Mort, David N Cooper. Hum Genomics 2009
112
50

Combined linkage analysis and exome sequencing identifies novel genes for familial goiter.
Junxia Yan, Tsutomu Takahashi, Toshihiro Ohura, Hiroyuki Adachi, Ikuko Takahashi, Eishin Ogawa, Hiroko Okuda, Hatasu Kobayashi, Toshiaki Hitomi, Wanyang Liu,[...]. J Hum Genet 2013
16
50

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs.
Tobias Fehlmann, Stefanie Reinheimer, Chunyu Geng, Xiaoshan Su, Snezana Drmanac, Andrei Alexeev, Chunyan Zhang, Christina Backes, Nicole Ludwig, Martin Hart,[...]. Clin Epigenetics 2016
68
50

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
50

The sequence of sequencers: The history of sequencing DNA.
James M Heather, Benjamin Chain. Genomics 2016
264
50

Point: population stratification: a problem for case-control studies of candidate-gene associations?
Duncan C Thomas, John S Witte. Cancer Epidemiol Biomarkers Prev 2002
316
50


Molecular findings among patients referred for clinical whole-exome sequencing.
Yaping Yang, Donna M Muzny, Fan Xia, Zhiyv Niu, Richard Person, Yan Ding, Patricia Ward, Alicia Braxton, Min Wang, Christian Buhay,[...]. JAMA 2014
819
50

Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2016 update (ACMG SF v2.0): a policy statement of the American College of Medical Genetics and Genomics.
Sarah S Kalia, Kathy Adelman, Sherri J Bale, Wendy K Chung, Christine Eng, James P Evans, Gail E Herman, Sophia B Hufnagel, Teri E Klein, Bruce R Korf,[...]. Genet Med 2017
842
50

SeqMule: automated pipeline for analysis of human exome/genome sequencing data.
Yunfei Guo, Xiaolei Ding, Yufeng Shen, Gholson J Lyon, Kai Wang. Sci Rep 2015
35
50

Exome sequencing has higher diagnostic yield compared to simulated disease-specific panels in children with suspected monogenic disorders.
Oliver James Dillon, Sebastian Lunke, Zornitza Stark, Alison Yeung, Natalie Thorne, Clara Gaff, Susan M White, Tiong Yang Tan. Eur J Hum Genet 2018
51
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.