A citation-based method for searching scientific literature

Shaohua Li, Trung Duc Nguyen, Thuy Linh Nguyen, Tuan Anh Nguyen. Nat Commun 2020
Times Cited: 9







List of co-cited articles
56 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Molecular Basis for the Single-Nucleotide Precision of Primary microRNA Processing.
S Chul Kwon, S Chan Baek, Yeon-Gil Choi, Jihye Yang, Young-Suk Lee, Jae-Sung Woo, V Narry Kim. Mol Cell 2019
27
77

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
77

Beyond secondary structure: primary-sequence determinants license pri-miRNA hairpins for processing.
Vincent C Auyeung, Igor Ulitsky, Sean E McGeary, David P Bartel. Cell 2013
247
77

Metazoan MicroRNAs.
David P Bartel. Cell 2018
77


Novel determinants of mammalian primary microRNA processing revealed by systematic evaluation of hairpin-containing transcripts and human genetic variation.
Christine Roden, Jonathan Gaillard, Shaveta Kanoria, William Rennie, Syndi Barish, Jijun Cheng, Wen Pan, Jun Liu, Chris Cotsapas, Ye Ding,[...]. Genome Res 2017
44
66

Cryo-EM Structures of Human Drosha and DGCR8 in Complex with Primary MicroRNA.
Alexander C Partin, Kaiming Zhang, Byung-Cheon Jeong, Emily Herrell, Shanshan Li, Wah Chiu, Yunsun Nam. Mol Cell 2020
23
66

Functional Anatomy of the Human Microprocessor.
Tuan Anh Nguyen, Myung Hyun Jo, Yeon-Gil Choi, Joha Park, S Chul Kwon, Sungchul Hohng, V Narry Kim, Jae-Sung Woo. Cell 2015
186
66

The internal loops in the lower stem of primary microRNA transcripts facilitate single cleavage of human Microprocessor.
Thuy Linh Nguyen, Trung Duc Nguyen, Sheng Bao, Shaohua Li, Tuan Anh Nguyen. Nucleic Acids Res 2020
11
66

SRSF3 recruits DROSHA to the basal junction of primary microRNAs.
Kijun Kim, Trung Duc Nguyen, Shaohua Li, Tuan Anh Nguyen. RNA 2018
34
55

MirGeneDB 2.0: the metazoan microRNA complement.
Bastian Fromm, Diana Domanska, Eirik Høye, Vladimir Ovchinnikov, Wenjing Kang, Ernesto Aparicio-Puerta, Morten Johansen, Kjersti Flatmark, Anthony Mathelier, Eivind Hovig,[...]. Nucleic Acids Res 2020
74
55

Orientation of Human Microprocessor on Primary MicroRNAs.
Huong Minh Nguyen, Trung Duc Nguyen, Thuy Linh Nguyen, Tuan Anh Nguyen. Biochemistry 2019
9
55

Towards a molecular understanding of microRNA-mediated gene silencing.
Stefanie Jonas, Elisa Izaurralde. Nat Rev Genet 2015
948
55

Structural Basis for pri-miRNA Recognition by Drosha.
Wenxing Jin, Jia Wang, Chao-Pei Liu, Hong-Wei Wang, Rui-Ming Xu. Mol Cell 2020
16
55

Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex.
Jinju Han, Yoontae Lee, Kyu-Hyeon Yeom, Jin-Wu Nam, Inha Heo, Je-Keun Rhee, Sun Young Sohn, Yunje Cho, Byoung-Tak Zhang, V Narry Kim. Cell 2006
55

The Drosha-DGCR8 complex in primary microRNA processing.
Jinju Han, Yoontae Lee, Kyu-Hyun Yeom, Young-Kook Kim, Hua Jin, V Narry Kim. Genes Dev 2004
44

Heme enables proper positioning of Drosha and DGCR8 on primary microRNAs.
Alexander C Partin, Tri D Ngo, Emily Herrell, Byung-Cheon Jeong, Gary Hon, Yunsun Nam. Nat Commun 2017
33
44

Processing of primary microRNAs by the Microprocessor complex.
Ahmet M Denli, Bastiaan B J Tops, Ronald H A Plasterk, René F Ketting, Gregory J Hannon. Nature 2004
44

Making RISC.
Tomoko Kawamata, Yukihide Tomari. Trends Biochem Sci 2010
317
44

Microprocessor depends on hemin to recognize the apical loop of primary microRNA.
Tuan Anh Nguyen, Joha Park, Thi Lieu Dang, Yeon-Gil Choi, V Narry Kim. Nucleic Acids Res 2018
29
44

ViennaRNA Package 2.0.
Ronny Lorenz, Stephan H Bernhart, Christian Höner Zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F Stadler, Ivo L Hofacker. Algorithms Mol Biol 2011
44

A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.
G Hutvágner, J McLachlan, A E Pasquinelli, E Bálint, T Tuschl, P D Zamore. Science 2001
44

Structure of Human DROSHA.
S Chul Kwon, Tuan Anh Nguyen, Yeon-Gil Choi, Myung Hyun Jo, Sungchul Hohng, V Narry Kim, Jae-Sung Woo. Cell 2016
115
33


The Microprocessor complex mediates the genesis of microRNAs.
Richard I Gregory, Kai-Ping Yan, Govindasamy Amuthan, Thimmaiah Chendrimada, Behzad Doratotaj, Neil Cooch, Ramin Shiekhattar. Nature 2004
33

Real-time quantification of microRNAs by stem-loop RT-PCR.
Caifu Chen, Dana A Ridzon, Adam J Broomer, Zhaohui Zhou, Danny H Lee, Julie T Nguyen, Maura Barbisin, Nan Lan Xu, Vikram R Mahuvakar, Mark R Andersen,[...]. Nucleic Acids Res 2005
33

Genetic variation and RNA structure regulate microRNA biogenesis.
Noemi Fernandez, Ross A Cordiner, Robert S Young, Nele Hug, Sara Macias, Javier F Cáceres. Nat Commun 2017
39
33

Lower and upper stem-single-stranded RNA junctions together determine the Drosha cleavage site.
Hongming Ma, Yonggan Wu, Jang-Gi Choi, Haoquan Wu. Proc Natl Acad Sci U S A 2013
59
33

Select amino acids in DGCR8 are essential for the UGU-pri-miRNA interaction and processing.
Thi Lieu Dang, Cong Truc Le, Minh Ngoc Le, Trung Duc Nguyen, Thuy Linh Nguyen, Sheng Bao, Shaohua Li, Tuan Anh Nguyen. Commun Biol 2020
4
75

Regulation of microRNA function in animals.
Luca F R Gebert, Ian J MacRae. Nat Rev Mol Cell Biol 2019
738
33

MicroRNA maturation: stepwise processing and subcellular localization.
Yoontae Lee, Kipyoung Jeon, Jun-Tae Lee, Sunyoung Kim, V Narry Kim. EMBO J 2002
33

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
22

The DGCR8 RNA-binding heme domain recognizes primary microRNAs by clamping the hairpin.
Jen Quick-Cleveland, Jose P Jacob, Sara H Weitz, Grant Shoffner, Rachel Senturia, Feng Guo. Cell Rep 2014
46
22


Argonaute-mediated translational repression (and activation).
Shintaro Iwasaki, Yukihide Tomari. Fly (Austin) 2009
39
22


Post-transcriptional control of miRNA biogenesis.
Gracjan Michlewski, Javier F Cáceres. RNA 2019
161
22

Microprocessor activity controls differential miRNA biogenesis In Vivo.
Thomas Conrad, Annalisa Marsico, Maja Gehre, Ulf Andersson Orom. Cell Rep 2014
49
22

The nuclear RNase III Drosha initiates microRNA processing.
Yoontae Lee, Chiyoung Ahn, Jinju Han, Hyounjeong Choi, Jaekwang Kim, Jeongbin Yim, Junho Lee, Patrick Provost, Olof Rådmark, Sunyoung Kim,[...]. Nature 2003
22

MicroRNA genes are transcribed by RNA polymerase II.
Yoontae Lee, Minju Kim, Jinju Han, Kyu-Hyun Yeom, Sanghyuk Lee, Sung Hee Baek, V Narry Kim. EMBO J 2004
22

RNAstructure: software for RNA secondary structure prediction and analysis.
Jessica S Reuter, David H Mathews. BMC Bioinformatics 2010
913
22


Drosha processing controls the specificity and efficiency of global microRNA expression.
Yong Feng, Xiaoxiao Zhang, Qingfeng Song, Tongbin Li, Yan Zeng. Biochim Biophys Acta 2011
34
22

miRBase: annotating high confidence microRNAs using deep sequencing data.
Ana Kozomara, Sam Griffiths-Jones. Nucleic Acids Res 2014
22

Identification of hundreds of conserved and nonconserved human microRNAs.
Isaac Bentwich, Amir Avniel, Yael Karov, Ranit Aharonov, Shlomit Gilad, Omer Barad, Adi Barzilai, Paz Einat, Uri Einav, Eti Meiri,[...]. Nat Genet 2005
22

miRBase: from microRNA sequences to function.
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. Nucleic Acids Res 2019
22

Human disease-associated single nucleotide polymorphism changes the orientation of DROSHA on pri-mir-146a.
Cong Truc Le, Thuy Linh Nguyen, Trung Duc Nguyen, Tuan Anh Nguyen. RNA 2020
4
50

Genomic Clustering Facilitates Nuclear Processing of Suboptimal Pri-miRNA Loci.
Renfu Shang, S Chan Baek, Kijun Kim, Boseon Kim, V Narry Kim, Eric C Lai. Mol Cell 2020
9
22

Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates.
Jiayu Wen, Erik Ladewig, Sol Shenker, Jaaved Mohammed, Eric C Lai. PLoS Comput Biol 2015
43
22

Hsc70/Hsp90 chaperone machinery mediates ATP-dependent RISC loading of small RNA duplexes.
Shintaro Iwasaki, Maki Kobayashi, Mayuko Yoda, Yuriko Sakaguchi, Susumu Katsuma, Tsutomu Suzuki, Yukihide Tomari. Mol Cell 2010
281
22


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.