A citation-based method for searching scientific literature

Keren Bahar Halpern, Hassan Massalha, Rachel K Zwick, Andreas E Moor, David Castillo-Azofeifa, Milena Rozenberg, Lydia Farack, Adi Egozi, Dan R Miller, Inna Averbukh, Yotam Harnik, Noa Weinberg-Corem, Frederic J de Sauvage, Ido Amit, Ophir D Klein, Michal Shoshkes-Carmel, Shalev Itzkovitz. Nat Commun 2020
Times Cited: 40







List of co-cited articles
418 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Subepithelial telocytes are an important source of Wnts that supports intestinal crypts.
Michal Shoshkes-Carmel, Yue J Wang, Kirk J Wangensteen, Beáta Tóth, Ayano Kondo, Efi E Massasa, Shalev Itzkovitz, Klaus H Kaestner. Nature 2018
210
60

Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient.
Neil McCarthy, Elisa Manieri, Elaine E Storm, Assieh Saadatpour, Adrienne M Luoma, Varun N Kapoor, Shariq Madha, Liam T Gaynor, Christian Cox, Shilpa Keerthivasan,[...]. Cell Stem Cell 2020
77
40

PDGFRα+ pericryptal stromal cells are the critical source of Wnts and RSPO3 for murine intestinal stem cells in vivo.
Gediminas Greicius, Zahra Kabiri, Kristmundur Sigmundsson, Chao Liang, Ralph Bunte, Manvendra K Singh, David M Virshup. Proc Natl Acad Sci U S A 2018
134
37

Spatial Reconstruction of Single Enterocytes Uncovers Broad Zonation along the Intestinal Villus Axis.
Andreas E Moor, Yotam Harnik, Shani Ben-Moshe, Efi E Massasa, Milena Rozenberg, Raya Eilam, Keren Bahar Halpern, Shalev Itzkovitz. Cell 2018
123
37

Identification of stem cells in small intestine and colon by marker gene Lgr5.
Nick Barker, Johan H van Es, Jeroen Kuipers, Pekka Kujala, Maaike van den Born, Miranda Cozijnsen, Andrea Haegebarth, Jeroen Korving, Harry Begthel, Peter J Peters,[...]. Nature 2007
37

GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells.
Bahar Degirmenci, Tomas Valenta, Slavica Dimitrieva, George Hausmann, Konrad Basler. Nature 2018
151
32

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease.
James Kinchen, Hannah H Chen, Kaushal Parikh, Agne Antanaviciute, Marta Jagielowicz, David Fawkner-Corbett, Neil Ashley, Laura Cubitt, Esther Mellado-Gomez, Moustafa Attar,[...]. Cell 2018
201
32

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.
Christopher S Smillie, Moshe Biton, Jose Ordovas-Montanes, Keri M Sullivan, Grace Burgin, Daniel B Graham, Rebecca H Herbst, Noga Rogel, Michal Slyper, Julia Waldman,[...]. Cell 2019
288
27

CD34+ mesenchymal cells are a major component of the intestinal stem cells niche at homeostasis and after injury.
Igor Stzepourginski, Giulia Nigro, Jean-Marie Jacob, Sophie Dulauroy, Philippe J Sansonetti, Gérard Eberl, Lucie Peduto. Proc Natl Acad Sci U S A 2017
142
27

Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts.
Toshiro Sato, Johan H van Es, Hugo J Snippert, Daniel E Stange, Robert G Vries, Maaike van den Born, Nick Barker, Noah F Shroyer, Marc van de Wetering, Hans Clevers. Nature 2011
27

A single-cell survey of the small intestinal epithelium.
Adam L Haber, Moshe Biton, Noga Rogel, Rebecca H Herbst, Karthik Shekhar, Christopher Smillie, Grace Burgin, Toni M Delorey, Michael R Howitt, Yarden Katz,[...]. Nature 2017
589
27

Redundant sources of Wnt regulate intestinal stem cells and promote formation of Paneth cells.
Henner F Farin, Johan H Van Es, Hans Clevers. Gastroenterology 2012
393
25

Foxl1-expressing mesenchymal cells constitute the intestinal stem cell niche.
Reina Aoki, Michal Shoshkes-Carmel, Nan Gao, Soona Shin, Catherine L May, Maria L Golson, Adam M Zahm, Michael Ray, Caroline L Wiser, Christopher V E Wright,[...]. Cell Mol Gastroenterol Hepatol 2016
139
25

Telocytes express PDGFRα in the human gastrointestinal tract.
Maria-Giuliana Vannucchi, Chiara Traini, Mirko Manetti, Lidia Ibba-Manneschi, Maria-Simonetta Faussone-Pellegrini. J Cell Mol Med 2013
125
22

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.
Toshiro Sato, Robert G Vries, Hugo J Snippert, Marc van de Wetering, Nick Barker, Daniel E Stange, Johan H van Es, Arie Abo, Pekka Kujala, Peter J Peters,[...]. Nature 2009
22

BMP restricts stemness of intestinal Lgr5+ stem cells by directly suppressing their signature genes.
Zhen Qi, Yehua Li, Bing Zhao, Chi Xu, Yuan Liu, Haonan Li, Bingjie Zhang, Xinquan Wang, Xiao Yang, Wei Xie,[...]. Nat Commun 2017
123
22

Single cell and genetic analyses reveal conserved populations and signaling mechanisms of gastrointestinal stromal niches.
Ji-Eun Kim, Lijiang Fei, Wen-Chi Yin, Sabrina Coquenlorge, Abilasha Rao-Bhatia, Xiaoyun Zhang, Sammy Shun Wai Shi, Ju Hee Lee, Noah A Hahn, Wasi Rizvi,[...]. Nat Commun 2020
28
32

Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell.
Arshad Ayyaz, Sandeep Kumar, Bruno Sangiorgi, Bibaswan Ghoshal, Jessica Gosio, Shaida Ouladan, Mardi Fink, Seda Barutcu, Daniel Trcka, Jess Shen,[...]. Nature 2019
148
22

Stroma provides an intestinal stem cell niche in the absence of epithelial Wnts.
Zahra Kabiri, Gediminas Greicius, Babita Madan, Steffen Biechele, Zhendong Zhong, Hamed Zaribafzadeh, Edison, Jamal Aliyev, Yonghui Wu, Ralph Bunte,[...]. Development 2014
210
20

Intact function of Lgr5 receptor-expressing intestinal stem cells in the absence of Paneth cells.
Tae-Hee Kim, Silvia Escudero, Ramesh A Shivdasani. Proc Natl Acad Sci U S A 2012
164
20

A critical role for the Wnt effector Tcf4 in adult intestinal homeostatic self-renewal.
Johan H van Es, Andrea Haegebarth, Pekka Kujala, Shalev Itzkovitz, Bon-Kyoung Koo, Sylvia F Boj, Jeroen Korving, Maaike van den Born, Alexander van Oudenaarden, Sylvie Robine,[...]. Mol Cell Biol 2012
169
20

Functional intestinal stem cells after Paneth cell ablation induced by the loss of transcription factor Math1 (Atoh1).
Aurélie Durand, Bridgitte Donahue, Grégory Peignon, Franck Letourneur, Nicolas Cagnard, Christian Slomianny, Christine Perret, Noah F Shroyer, Béatrice Romagnolo. Proc Natl Acad Sci U S A 2012
212
20

Wnt secretion from epithelial cells and subepithelial myofibroblasts is not required in the mouse intestinal stem cell niche in vivo.
Adrianna K San Roman, Chenura D Jayewickreme, L Charles Murtaugh, Ramesh A Shivdasani. Stem Cell Reports 2014
79
20

Enteroendocrine cells switch hormone expression along the crypt-to-villus BMP signalling gradient.
Joep Beumer, Benedetta Artegiani, Yorick Post, Frank Reimann, Fiona Gribble, Thuc Nghi Nguyen, Hongkui Zeng, Maaike Van den Born, Johan H Van Es, Hans Clevers. Nat Cell Biol 2018
95
20

Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche.
Ysbrand M Nusse, Adam K Savage, Pauline Marangoni, Axel K M Rosendahl-Huber, Tyler A Landman, Frederic J de Sauvage, Richard M Locksley, Ophir D Klein. Nature 2018
104
20

Dynamic Reorganization of Chromatin Accessibility Signatures during Dedifferentiation of Secretory Precursors into Lgr5+ Intestinal Stem Cells.
Unmesh Jadhav, Madhurima Saxena, Nicholas K O'Neill, Assieh Saadatpour, Guo-Cheng Yuan, Zachary Herbert, Kazutaka Murata, Ramesh A Shivdasani. Cell Stem Cell 2017
124
20

Tales from the crypt: new insights into intestinal stem cells.
Helmuth Gehart, Hans Clevers. Nat Rev Gastroenterol Hepatol 2019
272
20

BMP signaling inhibits intestinal stem cell self-renewal through suppression of Wnt-beta-catenin signaling.
Xi C He, Jiwang Zhang, Wei-Gang Tong, Ossama Tawfik, Jason Ross, David H Scoville, Qiang Tian, Xin Zeng, Xi He, Leanne M Wiedemann,[...]. Nat Genet 2004
742
17

Paracrine orchestration of intestinal tumorigenesis by a mesenchymal niche.
Manolis Roulis, Aimilios Kaklamanos, Marina Schernthanner, Piotr Bielecki, Jun Zhao, Eleanna Kaffe, Laura-Sophie Frommelt, Rihao Qu, Marlene S Knapp, Ana Henriques,[...]. Nature 2020
86
17

Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity.
Kelley S Yan, Olivier Gevaert, Grace X Y Zheng, Benedict Anchang, Christopher S Probert, Kathryn A Larkin, Paige S Davies, Zhuan-Fen Cheng, John S Kaddis, Arnold Han,[...]. Cell Stem Cell 2017
179
17

YAP/TAZ-Dependent Reprogramming of Colonic Epithelium Links ECM Remodeling to Tissue Regeneration.
Shiro Yui, Luca Azzolin, Martti Maimets, Marianne Terndrup Pedersen, Robert P Fordham, Stine L Hansen, Hjalte L Larsen, Jordi Guiu, Mariana R P Alves, Carsten F Rundsten,[...]. Cell Stem Cell 2018
225
17

Intestinal label-retaining cells are secretory precursors expressing Lgr5.
Simon J A Buczacki, Heather Ireland Zecchini, Anna M Nicholson, Roslin Russell, Louis Vermeulen, Richard Kemp, Douglas J Winton. Nature 2013
505
17

The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4' cell markers.
Javier Muñoz, Daniel E Stange, Arnout G Schepers, Marc van de Wetering, Bon-Kyoung Koo, Shalev Itzkovitz, Richard Volckmann, Kevin S Kung, Jan Koster, Sorina Radulescu,[...]. EMBO J 2012
487
17

Replacement of Lost Lgr5-Positive Stem Cells through Plasticity of Their Enterocyte-Lineage Daughters.
Paul W Tetteh, Onur Basak, Henner F Farin, Kay Wiebrands, Kai Kretzschmar, Harry Begthel, Maaike van den Born, Jeroen Korving, Frederic de Sauvage, Johan H van Es,[...]. Cell Stem Cell 2016
307
17

Reg4+ deep crypt secretory cells function as epithelial niche for Lgr5+ stem cells in colon.
Nobuo Sasaki, Norman Sachs, Kay Wiebrands, Saskia I J Ellenbroek, Arianna Fumagalli, Anna Lyubimova, Harry Begthel, Maaike van den Born, Johan H van Es, Wouter R Karthaus,[...]. Proc Natl Acad Sci U S A 2016
143
17

Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells.
Hugo J Snippert, Laurens G van der Flier, Toshiro Sato, Johan H van Es, Maaike van den Born, Carla Kroon-Veenboer, Nick Barker, Allon M Klein, Jacco van Rheenen, Benjamin D Simons,[...]. Cell 2010
17

Stem cells, self-renewal, and differentiation in the intestinal epithelium.
Laurens G van der Flier, Hans Clevers. Annu Rev Physiol 2009
17

T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation.
Moshe Biton, Adam L Haber, Noga Rogel, Grace Burgin, Semir Beyaz, Alexandra Schnell, Orr Ashenberg, Chien-Wen Su, Christopher Smillie, Karthik Shekhar,[...]. Cell 2018
178
17

Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells.
Kazutaka Murata, Unmesh Jadhav, Shariq Madha, Johan van Es, Justin Dean, Alessia Cavazza, Kai Wucherpfennig, Franziska Michor, Hans Clevers, Ramesh A Shivdasani. Cell Stem Cell 2020
70
17

A reserve stem cell population in small intestine renders Lgr5-positive cells dispensable.
Hua Tian, Brian Biehs, Søren Warming, Kevin G Leong, Linda Rangell, Ophir D Klein, Frederic J de Sauvage. Nature 2011
756
17

Emerging diverse roles of telocytes.
Ayano Kondo, Klaus H Kaestner. Development 2019
30
20


Telocytes revisited.
Sanda M Cretoiu, Laurentiu M Popescu. Biomol Concepts 2014
161
15

De novo crypt formation and juvenile polyposis on BMP inhibition in mouse intestine.
Anna-Pavlina G Haramis, Harry Begthel, Maaike van den Born, Johan van Es, Suzanne Jonkheer, G Johan A Offerhaus, Hans Clevers. Science 2004
517
15

Canonical Wnt signals are essential for homeostasis of the intestinal epithelium.
Daniel Pinto, Alex Gregorieff, Harry Begthel, Hans Clevers. Genes Dev 2003
733
15

Wnt/beta-catenin is essential for intestinal homeostasis and maintenance of intestinal stem cells.
Tea Fevr, Sylvie Robine, Daniel Louvard, Joerg Huelsken. Mol Cell Biol 2007
410
15



Mesenchymal cells of the intestinal lamina propria.
D W Powell, I V Pinchuk, J I Saada, Xin Chen, R C Mifflin. Annu Rev Physiol 2011
213
15

Gene expression patterns of human colon tops and basal crypts and BMP antagonists as intestinal stem cell niche factors.
Cynthia Kosinski, Vivian S W Li, Annie S Y Chan, Ji Zhang, Coral Ho, Wai Yin Tsui, Tsun Leung Chan, Randy C Mifflin, Don W Powell, Siu Tsan Yuen,[...]. Proc Natl Acad Sci U S A 2007
378
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.