A citation-based method for searching scientific literature

Xin Shao, Amalie M Joergensen, Niall G Howlett, Michael Lisby, Vibe H Oestergaard. Nucleic Acids Res 2020
Times Cited: 8







List of co-cited articles
103 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Fork Cleavage-Religation Cycle and Active Transcription Mediate Replication Restart after Fork Stalling at Co-transcriptional R-Loops.
Nagaraja Chappidi, Zuzana Nascakova, Barbora Boleslavska, Ralph Zellweger, Esin Isik, Martin Andrs, Shruti Menon, Jana Dobrovolna, Chiara Balbo Pogliano, Joao Matos,[...]. Mol Cell 2020
40
62

Transcription-mediated replication hindrance: a major driver of genome instability.
Belén Gómez-González, Andrés Aguilera. Genes Dev 2019
78
62

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
225
62


Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress.
Jérôme Poli, Christian-Benedikt Gerhold, Alessandro Tosi, Nicole Hustedt, Andrew Seeber, Ragna Sack, Franz Herzog, Philippe Pasero, Kenji Shimada, Karl-Peter Hopfner,[...]. Genes Dev 2016
67
50


Temporal separation of replication and transcription during S-phase progression.
Matthieu Meryet-Figuiere, Babak Alaei-Mahabadi, Mohamad Moustafa Ali, Sanhita Mitra, Santhilal Subhash, Gaurav Kumar Pandey, Erik Larsson, Chandrasekhar Kanduri. Cell Cycle 2014
28
50

SUMO2 conjugation of PCNA facilitates chromatin remodeling to resolve transcription-replication conflicts.
Min Li, Xiaohua Xu, Chou-Wei Chang, Li Zheng, Binghui Shen, Yilun Liu. Nat Commun 2018
25
37

Direct inhibition of RNA polymerase II transcription by RECQL5.
Ozan Aygün, Xiaohua Xu, Yilun Liu, Hidehisa Takahashi, Stephanie E Kong, Ronald C Conaway, Joan W Conaway, Jesper Q Svejstrup. J Biol Chem 2009
49
37

RECQ5 helicase promotes resolution of conflicts between replication and transcription in human cells.
Vaclav Urban, Jana Dobrovolna, Daniela Hühn, Jana Fryzelkova, Jiri Bartek, Pavel Janscak. J Cell Biol 2016
38
37

RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress.
Marco Saponaro, Theodoros Kantidakis, Richard Mitter, Gavin P Kelly, Mark Heron, Hannah Williams, Johannes Söding, Aengus Stewart, Jesper Q Svejstrup. Cell 2014
113
37

Transcription-replication encounters, consequences and genomic instability.
Anne Helmrich, Monica Ballarino, Evgeny Nudler, Laszlo Tora. Nat Struct Mol Biol 2013
172
37

Control of DNA replication timing in the 3D genome.
Claire Marchal, Jiao Sima, David M Gilbert. Nat Rev Mol Cell Biol 2019
55
37

Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.
Amaya Alzu, Rodrigo Bermejo, Martina Begnis, Chiara Lucca, Daniele Piccini, Walter Carotenuto, Marco Saponaro, Alessandra Brambati, Andrea Cocito, Marco Foiani,[...]. Cell 2012
150
37

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
130
37

Transcription-mediated organization of the replication initiation program across large genes sets common fragile sites genome-wide.
Olivier Brison, Sami El-Hilali, Dana Azar, Stéphane Koundrioukoff, Mélanie Schmidt, Viola Nähse, Yan Jaszczyszyn, Anne-Marie Lachages, Bernard Dutrillaux, Claude Thermes,[...]. Nat Commun 2019
26
37

Identification of early replicating fragile sites that contribute to genome instability.
Jacqueline H Barlow, Robert B Faryabi, Elsa Callén, Nancy Wong, Amy Malhowski, Hua Tang Chen, Gustavo Gutierrez-Cruz, Hong-Wei Sun, Peter McKinnon, George Wright,[...]. Cell 2013
257
37

RECQ-like helicases Sgs1 and BLM regulate R-loop-associated genome instability.
Emily Yun-Chia Chang, Carolina A Novoa, Maria J Aristizabal, Yan Coulombe, Romulo Segovia, Richa Chaturvedi, Yaoqing Shen, Christelle Keong, Annie S Tam, Steven J M Jones,[...]. J Cell Biol 2017
52
37

PIF1 family DNA helicases suppress R-loop mediated genome instability at tRNA genes.
Phong Lan Thao Tran, Thomas J Pohl, Chi-Fu Chen, Angela Chan, Sebastian Pott, Virginia A Zakian. Nat Commun 2017
58
37

RECQ5: A Mysterious Helicase at the Interface of DNA Replication and Transcription.
Martin Andrs, Zdenka Hasanova, Anna Oravetzova, Jana Dobrovolna, Pavel Janscak. Genes (Basel) 2020
11
37


Multiple signaling kinases target Mrc1 to prevent genomic instability triggered by transcription-replication conflicts.
Alba Duch, Berta Canal, Sonia I Barroso, María García-Rubio, Gerhard Seisenbacher, Andrés Aguilera, Eulàlia de Nadal, Francesc Posas. Nat Commun 2018
14
37

The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores.
Rodrigo Bermejo, Thelma Capra, Rachel Jossen, Arianna Colosio, Camilla Frattini, Walter Carotenuto, Andrea Cocito, Ylli Doksani, Hannah Klein, Belén Gómez-González,[...]. Cell 2011
161
37

Structure of the human RECQ1 helicase reveals a putative strand-separation pin.
Ashley C W Pike, Binesh Shrestha, Venkateswarlu Popuri, Nicola Burgess-Brown, Laura Muzzolini, Silvia Costantini, Alessandro Vindigni, Opher Gileadi. Proc Natl Acad Sci U S A 2009
93
25

Structural mimicry in transcription regulation of human RNA polymerase II by the DNA helicase RECQL5.
Susanne A Kassube, Martin Jinek, Jie Fang, Susan Tsutakawa, Eva Nogales. Nat Struct Mol Biol 2013
25
25

RECQ5 Helicase Cooperates with MUS81 Endonuclease in Processing Stalled Replication Forks at Common Fragile Sites during Mitosis.
Stefano Di Marco, Zdenka Hasanova, Radhakrishnan Kanagaraj, Nagaraja Chappidi, Veronika Altmannova, Shruti Menon, Hana Sedlackova, Jana Langhoff, Kalpana Surendranath, Daniela Hühn,[...]. Mol Cell 2017
46
25

RECQL5/Recql5 helicase regulates homologous recombination and suppresses tumor formation via disruption of Rad51 presynaptic filaments.
Yiduo Hu, Steven Raynard, Michael G Sehorn, Xincheng Lu, Wendy Bussen, Lu Zheng, Jeremy M Stark, Ellen L Barnes, Peter Chi, Pavel Janscak,[...]. Genes Dev 2007
247
25

Structural mechanisms of DNA binding and unwinding in bacterial RecQ helicases.
Kelly A Manthei, Morgan C Hill, Jordan E Burke, Samuel E Butcher, James L Keck. Proc Natl Acad Sci U S A 2015
41
25

WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing.
J Jefferson P Perry, Steven M Yannone, Lauren G Holden, Chiharu Hitomi, Aroumougame Asaithamby, Seungil Han, Priscilla K Cooper, David J Chen, John A Tainer. Nat Struct Mol Biol 2006
106
25


Human RECQ1 promotes restart of replication forks reversed by DNA topoisomerase I inhibition.
Matteo Berti, Arnab Ray Chaudhuri, Saravanabhavan Thangavel, Shivasankari Gomathinayagam, Sasa Kenig, Marko Vujanovic, Federico Odreman, Timo Glatter, Simona Graziano, Ramiro Mendoza-Maldonado,[...]. Nat Struct Mol Biol 2013
244
25

High-resolution structure of the E.coli RecQ helicase catalytic core.
Douglas A Bernstein, Morgan C Zittel, James L Keck. EMBO J 2003
202
25


Crystal structure of the Bloom's syndrome helicase indicates a role for the HRDC domain in conformational changes.
Joseph A Newman, Pavel Savitsky, Charles K Allerston, Anna H Bizard, Özgün Özer, Kata Sarlós, Ying Liu, Els Pardon, Jan Steyaert, Ian D Hickson,[...]. Nucleic Acids Res 2015
45
25

Insights into the RecQ helicase mechanism revealed by the structure of the helicase domain of human RECQL5.
Joseph A Newman, Hazel Aitkenhead, Pavel Savitsky, Opher Gileadi. Nucleic Acids Res 2017
12
25

Human exonuclease 1 and BLM helicase interact to resect DNA and initiate DNA repair.
Amitabh V Nimonkar, A Zeynep Ozsoy, Jochen Genschel, Paul Modrich, Stephen C Kowalczykowski. Proc Natl Acad Sci U S A 2008
225
25

Structure of human Bloom's syndrome helicase in complex with ADP and duplex DNA.
Michael K Swan, Valerie Legris, Adam Tanner, Philip M Reaper, Sarah Vial, Rebecca Bordas, John R Pollard, Peter A Charlton, Julian M C Golec, Jay A Bertrand. Acta Crystallogr D Biol Crystallogr 2014
45
25

Mutations in RECQL4 cause a subset of cases of Rothmund-Thomson syndrome.
S Kitao, A Shimamoto, M Goto, R W Miller, W A Smithson, N M Lindor, Y Furuichi. Nat Genet 1999
506
25

FANCD2 regulates BLM complex functions independently of FANCI to promote replication fork recovery.
Indrajit Chaudhury, Archana Sareen, Maya Raghunandan, Alexandra Sobeck. Nucleic Acids Res 2013
76
25

Transcription-replication conflicts: how they occur and how they are resolved.
Tatiana García-Muse, Andrés Aguilera. Nat Rev Mol Cell Biol 2016
170
25



WWP2 ubiquitylates RNA polymerase II for DNA-PK-dependent transcription arrest and repair at DNA breaks.
Pierre Caron, Tibor Pankotai, Wouter W Wiegant, Maxim A X Tollenaere, Audrey Furst, Celine Bonhomme, Angela Helfricht, Anton de Groot, Albert Pastink, Alfred C O Vertegaal,[...]. Genes Dev 2019
35
25

INO80 Chromatin Remodeler Facilitates Release of RNA Polymerase II from Chromatin for Ubiquitin-Mediated Proteasomal Degradation.
Anne Lafon, Surayya Taranum, Federico Pietrocola, Florent Dingli, Damarys Loew, Sandipan Brahma, Blaine Bartholomew, Manolis Papamichos-Chronakis. Mol Cell 2015
43
25

Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability.
Stefan Sigurdsson, A Barbara Dirac-Svejstrup, Jesper Q Svejstrup. Mol Cell 2010
91
25

Elongation Factor TFIIS Prevents Transcription Stress and R-Loop Accumulation to Maintain Genome Stability.
Diana Zatreanu, Zhong Han, Richard Mitter, Emanuela Tumini, Hannah Williams, Lea Gregersen, A Barbara Dirac-Svejstrup, Stefania Roma, Aengus Stewart, Andres Aguilera,[...]. Mol Cell 2019
32
25


Cdc48/p97 mediates UV-dependent turnover of RNA Pol II.
Rati Verma, Robert Oania, Ruihua Fang, Geoffrey T Smith, Raymond J Deshaies. Mol Cell 2011
143
25




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.