A citation-based method for searching scientific literature

Gerrald A Lodewijk, Diana P Fernandes, Iraklis Vretzakis, Jeanne E Savage, Frank M J Jacobs. Mol Biol Evol 2020
Times Cited: 3







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.
Ian T Fiddes, Gerrald A Lodewijk, Meghan Mooring, Colleen M Bosworth, Adam D Ewing, Gary L Mantalas, Adam M Novak, Anouk van den Bout, Alex Bishara, Jimi L Rosenkrantz,[...]. Cell 2018
154
100

Human-Specific NOTCH2NL Genes Expand Cortical Neurogenesis through Delta/Notch Regulation.
Ikuo K Suzuki, David Gacquer, Roxane Van Heurck, Devesh Kumar, Marta Wojno, Angéline Bilheu, Adèle Herpoel, Nelle Lambert, Julian Cheron, Franck Polleux,[...]. Cell 2018
118
100

Evolution and cell-type specificity of human-specific genes preferentially expressed in progenitors of fetal neocortex.
Marta Florio, Michael Heide, Anneline Pinson, Holger Brandl, Mareike Albert, Sylke Winkler, Pauline Wimberger, Wieland B Huttner, Michael Hiller. Elife 2018
58
66

Recurrent reciprocal 1q21.1 deletions and duplications associated with microcephaly or macrocephaly and developmental and behavioral abnormalities.
Nicola Brunetti-Pierri, Jonathan S Berg, Fernando Scaglia, John Belmont, Carlos A Bacino, Trilochan Sahoo, Seema R Lalani, Brett Graham, Brendan Lee, Marwan Shinawi,[...]. Nat Genet 2008
389
66

Low-Grade Astrocytoma Mutations in IDH1, P53, and ATRX Cooperate to Block Differentiation of Human Neural Stem Cells via Repression of SOX2.
Aram S Modrek, Danielle Golub, Themasap Khan, Devin Bready, Jod Prado, Christopher Bowman, Jingjing Deng, Guoan Zhang, Pedro P Rocha, Ramya Raviram,[...]. Cell Rep 2017
55
33


SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data.
André Kahles, Cheng Soon Ong, Yi Zhong, Gunnar Rätsch. Bioinformatics 2016
49
33

Genetic visualization of notch signaling in mammalian neurogenesis.
Itaru Imayoshi, Hiromi Shimojo, Masayuki Sakamoto, Toshiyuki Ohtsuka, Ryoichiro Kageyama. Cell Mol Life Sci 2013
31
33

Use of human embryonic stem cells to model pediatric gliomas with H3.3K27M histone mutation.
Kosuke Funato, Tamara Major, Peter W Lewis, C David Allis, Viviane Tabar. Science 2014
209
33

ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression.
Hong Wen, Yuanyuan Li, Yuanxin Xi, Shiming Jiang, Sabrina Stratton, Danni Peng, Kaori Tanaka, Yongfeng Ren, Zheng Xia, Jun Wu,[...]. Nature 2014
165
33

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.
Tomasz J Nowakowski, Aparna Bhaduri, Alex A Pollen, Beatriz Alvarado, Mohammed A Mostajo-Radji, Elizabeth Di Lullo, Maximilian Haeussler, Carmen Sandoval-Espinosa, Siyuan John Liu, Dmitry Velmeshev,[...]. Science 2017
267
33

Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Jeremy Schwartzentruber, Andrey Korshunov, Xiao-Yang Liu, David T W Jones, Elke Pfaff, Karine Jacob, Dominik Sturm, Adam M Fontebasso, Dong-Anh Khuong Quang, Martje Tönjes,[...]. Nature 2012
33

Loss of Atrx affects trophoblast development and the pattern of X-inactivation in extraembryonic tissues.
David Garrick, Jackie A Sharpe, Ruth Arkell, Lorraine Dobbie, Andrew J H Smith, William G Wood, Douglas R Higgs, Richard J Gibbons. PLoS Genet 2006
102
33

Progenetix: 12 years of oncogenomic data curation.
Haoyang Cai, Nitin Kumar, Ni Ai, Saumya Gupta, Prisni Rath, Michael Baudis. Nucleic Acids Res 2014
24
33

A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen.
Jason Moffat, Dorre A Grueneberg, Xiaoping Yang, So Young Kim, Angela M Kloepfer, Gregory Hinkle, Bruno Piqani, Thomas M Eisenhaure, Biao Luo, Jennifer K Grenier,[...]. Cell 2006
33

The genomic landscape of diffuse intrinsic pontine glioma and pediatric non-brainstem high-grade glioma.
Gang Wu, Alexander K Diaz, Barbara S Paugh, Sherri L Rankin, Bensheng Ju, Yongjin Li, Xiaoyan Zhu, Chunxu Qu, Xiang Chen, Junyuan Zhang,[...]. Nat Genet 2014
545
33


Cortical interneuron development: a tale of time and space.
Jia Sheng Hu, Daniel Vogt, Magnus Sandberg, John L Rubenstein. Development 2017
70
33

H3.3 G34R mutations in pediatric primitive neuroectodermal tumors of central nervous system (CNS-PNET) and pediatric glioblastomas: possible diagnostic and therapeutic implications?
Marco Gessi, Gerrit H Gielen, Jennifer Hammes, Evelyn Dörner, Anja Zur Mühlen, Andreas Waha, Torsten Pietsch. J Neurooncol 2013
48
33

Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells.
Simon J Elsässer, Kyung-Min Noh, Nichole Diaz, C David Allis, Laura A Banaszynski. Nature 2015
180
33

Genome Editing in hPSCs Reveals GATA6 Haploinsufficiency and a Genetic Interaction with GATA4 in Human Pancreatic Development.
Zhong-Dong Shi, Kihyun Lee, Dapeng Yang, Sadaf Amin, Nipun Verma, Qing V Li, Zengrong Zhu, Chew-Li Soh, Ritu Kumar, Todd Evans,[...]. Cell Stem Cell 2017
72
33

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
33

The histone variant H3.3 G34W substitution in giant cell tumor of the bone link chromatin and RNA processing.
Jinyeong Lim, Joo Hyun Park, Annika Baude, Yeongran Yoo, Yeon Kyu Lee, Christopher R Schmidt, Jong Bae Park, Jörg Fellenberg, Josef Zustin, Florian Haller,[...]. Sci Rep 2017
23
33

K27M mutation in histone H3.3 defines clinically and biologically distinct subgroups of pediatric diffuse intrinsic pontine gliomas.
Dong-Anh Khuong-Quang, Pawel Buczkowicz, Patricia Rakopoulos, Xiao-Yang Liu, Adam M Fontebasso, Eric Bouffet, Ute Bartels, Steffen Albrecht, Jeremy Schwartzentruber, Louis Letourneau,[...]. Acta Neuropathol 2012
515
33

BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing.
Rui Guo, Lijuan Zheng, Juw Won Park, Ruitu Lv, Hao Chen, Fangfang Jiao, Wenqi Xu, Shirong Mu, Hong Wen, Jinsong Qiu,[...]. Mol Cell 2014
116
33

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients.
André Kahles, Kjong-Van Lehmann, Nora C Toussaint, Matthias Hüser, Stefan G Stark, Timo Sachsenberg, Oliver Stegle, Oliver Kohlbacher, Chris Sander, Gunnar Rätsch. Cancer Cell 2018
225
33

Dissecting neural differentiation regulatory networks through epigenetic footprinting.
Michael J Ziller, Reuven Edri, Yakey Yaffe, Julie Donaghey, Ramona Pop, William Mallard, Robbyn Issner, Casey A Gifford, Alon Goren, Jeff Xing,[...]. Nature 2015
117
33

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.
Justin Lamb, Emily D Crawford, David Peck, Joshua W Modell, Irene C Blat, Matthew J Wrobel, Jim Lerner, Jean-Philippe Brunet, Aravind Subramanian, Kenneth N Ross,[...]. Science 2006
33


Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone.
Sam Behjati, Patrick S Tarpey, Nadège Presneau, Susanne Scheipl, Nischalan Pillay, Peter Van Loo, David C Wedge, Susanna L Cooke, Gunes Gundem, Helen Davies,[...]. Nat Genet 2013
375
33

ATRX loss promotes tumor growth and impairs nonhomologous end joining DNA repair in glioma.
Carl Koschmann, Anda-Alexandra Calinescu, Felipe J Nunez, Alan Mackay, Janet Fazal-Salom, Daniel Thomas, Flor Mendez, Neha Kamran, Marta Dzaman, Lakshman Mulpuri,[...]. Sci Transl Med 2016
121
33

GenePattern 2.0.
Michael Reich, Ted Liefeld, Joshua Gould, Jim Lerner, Pablo Tamayo, Jill P Mesirov. Nat Genet 2006
33

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
33

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.
Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Björn A Grüning,[...]. Nucleic Acids Res 2018
952
33

Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma.
Peter W Lewis, Manuel M Müller, Matthew S Koletsky, Francisco Cordero, Shu Lin, Laura A Banaszynski, Benjamin A Garcia, Tom W Muir, Oren J Becher, C David Allis. Science 2013
695
33

Integrated Molecular Meta-Analysis of 1,000 Pediatric High-Grade and Diffuse Intrinsic Pontine Glioma.
Alan Mackay, Anna Burford, Diana Carvalho, Elisa Izquierdo, Janat Fazal-Salom, Kathryn R Taylor, Lynn Bjerke, Matthew Clarke, Mara Vinci, Meera Nandhabalan,[...]. Cancer Cell 2017
303
33

Histone H3.3 G34 mutations promote aberrant PRC2 activity and drive tumor progression.
Siddhant U Jain, Sima Khazaei, Dylan M Marchione, Stefan M Lundgren, Xiaoshi Wang, Daniel N Weinberg, Shriya Deshmukh, Nikoleta Juretic, Chao Lu, C David Allis,[...]. Proc Natl Acad Sci U S A 2020
13
33

Histone H3.3. mutations drive pediatric glioblastoma through upregulation of MYCN.
Lynn Bjerke, Alan Mackay, Meera Nandhabalan, Anna Burford, Alexa Jury, Sergey Popov, Dorine A Bax, Diana Carvalho, Kathryn R Taylor, Maria Vinci,[...]. Cancer Discov 2013
180
33

Human ES cell-derived neural rosettes reveal a functionally distinct early neural stem cell stage.
Yechiel Elkabetz, Georgia Panagiotakos, George Al Shamy, Nicholas D Socci, Viviane Tabar, Lorenz Studer. Genes Dev 2008
458
33

CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Yuki Naito, Kimihiro Hino, Hidemasa Bono, Kumiko Ui-Tei. Bioinformatics 2015
439
33


Hotspot mutations in H3F3A and IDH1 define distinct epigenetic and biological subgroups of glioblastoma.
Dominik Sturm, Hendrik Witt, Volker Hovestadt, Dong-Anh Khuong-Quang, David T W Jones, Carolin Konermann, Elke Pfaff, Martje Tönjes, Martin Sill, Sebastian Bender,[...]. Cancer Cell 2012
33

Notching on Cancer's Door: Notch Signaling in Brain Tumors.
Marcin Teodorczyk, Mirko H H Schmidt. Front Oncol 2015
56
33

Inhibition of a K9/K36 demethylase by an H3.3 point mutation found in paediatric glioblastoma.
Hsiao P J Voon, Maheshi Udugama, Wendi Lin, Linda Hii, Ruby H P Law, David L Steer, Partha P Das, Jeffrey R Mann, Lee H Wong. Nat Commun 2018
24
33

Distinct factors control histone variant H3.3 localization at specific genomic regions.
Aaron D Goldberg, Laura A Banaszynski, Kyung-Min Noh, Peter W Lewis, Simon J Elsaesser, Sonja Stadler, Scott Dewell, Martin Law, Xingyi Guo, Xuan Li,[...]. Cell 2010
780
33

A versatile viral system for expression and depletion of proteins in mammalian cells.
Eric Campeau, Victoria E Ruhl, Francis Rodier, Corey L Smith, Brittany L Rahmberg, Jill O Fuss, Judith Campisi, Paul Yaswen, Priscilla K Cooper, Paul D Kaufman. PLoS One 2009
509
33

Directed differentiation and functional maturation of cortical interneurons from human embryonic stem cells.
Asif M Maroof, Sotirios Keros, Jennifer A Tyson, Shui-Wang Ying, Yosif M Ganat, Florian T Merkle, Becky Liu, Adam Goulburn, Edouard G Stanley, Andrew G Elefanty,[...]. Cell Stem Cell 2013
351
33

Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas.
Gang Wu, Alberto Broniscer, Troy A McEachron, Charles Lu, Barbara S Paugh, Jared Becksfort, Chunxu Qu, Li Ding, Robert Huether, Matthew Parker,[...]. Nat Genet 2012
912
33

H3.3K27M Cooperates with Trp53 Loss and PDGFRA Gain in Mouse Embryonic Neural Progenitor Cells to Induce Invasive High-Grade Gliomas.
Manav Pathania, Nicolas De Jay, Nicola Maestro, Ashot S Harutyunyan, Justyna Nitarska, Pirasteh Pahlavan, Stephen Henderson, Leonie G Mikael, Angela Richard-Londt, Ying Zhang,[...]. Cancer Cell 2017
90
33

Williams syndrome-specific neuroanatomical profile and its associations with behavioral features.
Chun Chieh Fan, Timothy T Brown, Hauke Bartsch, Joshua M Kuperman, Donald J Hagler, Andrew Schork, Yvonne Searcy, Ursula Bellugi, Eric Halgren, Anders M Dale. Neuroimage Clin 2017
12
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.