A citation-based method for searching scientific literature

Natalia V Barykina, Vladimir P Sotskov, Anna M Gruzdeva, You Kure Wu, Ruben Portugues, Oksana M Subach, Elizaveta S Chefanova, Viktor V Plusnin, Olga I Ivashkina, Konstantin V Anokhin, Anna V Vlaskina, Dmitry A Korzhenevskiy, Alena Y Nikolaeva, Konstantin M Boyko, Tatiana V Rakitina, Anna M Varizhuk, Galina E Pozmogova, Fedor V Subach. Int J Mol Sci 2020
Times Cited: 8







List of co-cited articles
39 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
62

Novel Genetically Encoded Bright Positive Calcium Indicator NCaMP7 Based on the mNeonGreen Fluorescent Protein.
Oksana M Subach, Vladimir P Sotskov, Viktor V Plusnin, Anna M Gruzdeva, Natalia V Barykina, Olga I Ivashkina, Konstantin V Anokhin, Alena Y Nikolaeva, Dmitry A Korzhenevskiy, Anna V Vlaskina,[...]. Int J Mol Sci 2020
14
62

A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.
Yi Shen, Hod Dana, Ahmed S Abdelfattah, Ronak Patel, Jamien Shea, Rosana S Molina, Bijal Rawal, Vladimir Rancic, Yu-Fen Chang, Lanshi Wu,[...]. BMC Biol 2018
48
62

NTnC-like genetically encoded calcium indicator with a positive and enhanced response and fast kinetics.
Natalia V Barykina, Danila A Doronin, Oksana M Subach, Vladimir P Sotskov, Viktor V Plusnin, Olga A Ivleva, Anna M Gruzdeva, Tatiana A Kunitsyna, Olga I Ivashkina, Alexander A Lazutkin,[...]. Sci Rep 2018
13
50

A genetically encoded near-infrared fluorescent calcium ion indicator.
Yong Qian, Kiryl D Piatkevich, Benedict Mc Larney, Ahmed S Abdelfattah, Sohum Mehta, Mitchell H Murdock, Sven Gottschalk, Rosana S Molina, Wei Zhang, Yingche Chen,[...]. Nat Methods 2019
75
50

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
411
50

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
414
50

A long Stokes shift red fluorescent Ca2+ indicator protein for two-photon and ratiometric imaging.
Jiahui Wu, Ahmed S Abdelfattah, Loïs S Miraucourt, Elena Kutsarova, Araya Ruangkittisakul, Hang Zhou, Klaus Ballanyi, Geoffrey Wicks, Mikhail Drobizhev, Aleksander Rebane,[...]. Nat Commun 2014
54
37

Near-Infrared Genetically Encoded Positive Calcium Indicator Based on GAF-FP Bacterial Phytochrome.
Oksana M Subach, Natalia V Barykina, Konstantin V Anokhin, Kiryl D Piatkevich, Fedor V Subach. Int J Mol Sci 2019
16
37

Improved green fluorescence.
R Heim, A B Cubitt, R Y Tsien. Nature 1995
37

Improved methods for marking active neuron populations.
Benjamien Moeyaert, Graham Holt, Rajtarun Madangopal, Alberto Perez-Alvarez, Brenna C Fearey, Nicholas F Trojanowski, Julia Ledderose, Timothy A Zolnik, Aniruddha Das, Davina Patel,[...]. Nat Commun 2018
46
37

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
799
37

Bright and High-Performance Genetically Encoded Ca2+ Indicator Based on mNeonGreen Fluorescent Protein.
Landon Zarowny, Abhi Aggarwal, Virginia M S Rutten, Ilya Kolb, Ronak Patel, Hsin-Yi Huang, Yu-Fen Chang, Tiffany Phan, Richard Kanyo, Misha B Ahrens,[...]. ACS Sens 2020
15
37

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
264
37


Engineering and characterization of a superfolder green fluorescent protein.
Jean-Denis Pédelacq, Stéphanie Cabantous, Timothy Tran, Thomas C Terwilliger, Geoffrey S Waldo. Nat Biotechnol 2006
25

The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins.
Erik A Rodriguez, Robert E Campbell, John Y Lin, Michael Z Lin, Atsushi Miyawaki, Amy E Palmer, Xiaokun Shu, Jin Zhang, Roger Y Tsien. Trends Biochem Sci 2017
279
25

A Guide to Fluorescent Protein FRET Pairs.
Bryce T Bajar, Emily S Wang, Shu Zhang, Michael Z Lin, Jun Chu. Sensors (Basel) 2016
173
25

Structural and evolutionary approaches to the design and optimization of fluorescence-based small molecule biosensors.
Joe A Kaczmarski, Joshua A Mitchell, Matthew A Spence, Vanessa Vongsouthi, Colin J Jackson. Curr Opin Struct Biol 2019
11
25

Improving the photostability of bright monomeric orange and red fluorescent proteins.
Nathan C Shaner, Michael Z Lin, Michael R McKeown, Paul A Steinbach, Kristin L Hazelwood, Michael W Davidson, Roger Y Tsien. Nat Methods 2008
643
25

Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein.
Nathan C Shaner, Robert E Campbell, Paul A Steinbach, Ben N G Giepmans, Amy E Palmer, Roger Y Tsien. Nat Biotechnol 2004
25

Genetically encoded calcium indicators.
Marco Mank, Oliver Griesbeck. Chem Rev 2008
182
25

A Genetically Encoded Fluorescent Sensor Enables Rapid and Specific Detection of Dopamine in Flies, Fish, and Mice.
Fangmiao Sun, Jianzhi Zeng, Miao Jing, Jingheng Zhou, Jiesi Feng, Scott F Owen, Yichen Luo, Funing Li, Huan Wang, Takashi Yamaguchi,[...]. Cell 2018
251
25

A Genetically Encoded Fluorescent Sensor for Rapid and Specific In Vivo Detection of Norepinephrine.
Jiesi Feng, Changmei Zhang, Julieta E Lischinsky, Miao Jing, Jingheng Zhou, Huan Wang, Yajun Zhang, Ao Dong, Zhaofa Wu, Hao Wu,[...]. Neuron 2019
128
25

Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.
Georg Nagel, Tanjef Szellas, Wolfram Huhn, Suneel Kateriya, Nona Adeishvili, Peter Berthold, Doris Ollig, Peter Hegemann, Ernst Bamberg. Proc Natl Acad Sci U S A 2003
25

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
737
25

A genetically encoded fluorescent sensor for in vivo imaging of GABA.
Jonathan S Marvin, Yoshiteru Shimoda, Vincent Magloire, Marco Leite, Takashi Kawashima, Thomas P Jensen, Ilya Kolb, Erika L Knott, Ondrej Novak, Kaspar Podgorski,[...]. Nat Methods 2019
113
25

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
488
25

Genetically encoded FRET-based biosensors for multiparameter fluorescence imaging.
Haley J Carlson, Robert E Campbell. Curr Opin Biotechnol 2009
98
25

Understanding the Fluorescence Change in Red Genetically Encoded Calcium Ion Indicators.
Rosana S Molina, Yong Qian, Jiahui Wu, Yi Shen, Robert E Campbell, Mikhail Drobizhev, Thomas E Hughes. Biophys J 2019
16
25


Structural basis for calcium sensing by GCaMP2.
Qi Wang, Bo Shui, Michael I Kotlikoff, Holger Sondermann. Structure 2008
115
25

Circular permutation and receptor insertion within green fluorescent proteins.
G S Baird, D A Zacharias, R Y Tsien. Proc Natl Acad Sci U S A 1999
618
25

Circularly Permuted Fluorescent Protein-Based Indicators: History, Principles, and Classification.
Alexander I Kostyuk, Aleksandra D Demidovich, Daria A Kotova, Vsevolod V Belousov, Dmitry S Bilan. Int J Mol Sci 2019
33
25

Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.
A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
25

Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators.
Benjamin F Fosque, Yi Sun, Hod Dana, Chao-Tsung Yang, Tomoko Ohyama, Michael R Tadross, Ronak Patel, Marta Zlatic, Douglas S Kim, Misha B Ahrens,[...]. Science 2015
219
25

Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins.
Takeharu Nagai, Shuichi Yamada, Takashi Tominaga, Michinori Ichikawa, Atsushi Miyawaki. Proc Natl Acad Sci U S A 2004
754
25

jYCaMP: an optimized calcium indicator for two-photon imaging at fiber laser wavelengths.
Manuel Alexander Mohr, Daniel Bushey, Abhi Aggarwal, Jonathan S Marvin, Jeong Jun Kim, Emiliano Jimenez Marquez, Yajie Liang, Ronak Patel, John J Macklin, Chi-Yu Lee,[...]. Nat Methods 2020
18
25

Improved calcium sensor GCaMP-X overcomes the calcium channel perturbations induced by the calmodulin in GCaMP.
Yaxiong Yang, Nan Liu, Yuanyuan He, Yuxia Liu, Lin Ge, Linzhi Zou, Sen Song, Wei Xiong, Xiaodong Liu. Nat Commun 2018
74
25

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome.
Jeremiah R Wagner, Joseph S Brunzelle, Katrina T Forest, Richard D Vierstra. Nature 2005
380
12

A far-red fluorescent protein evolved from a cyanobacterial phycobiliprotein.
Erik A Rodriguez, Geraldine N Tran, Larry A Gross, Jessica L Crisp, Xiaokun Shu, John Y Lin, Roger Y Tsien. Nat Methods 2016
100
12

How to Increase Brightness of Near-Infrared Fluorescent Proteins in Mammalian Cells.
Anton A Shemetov, Olena S Oliinyk, Vladislav V Verkhusha. Cell Chem Biol 2017
37
12

Smallest near-infrared fluorescent protein evolved from cyanobacteriochrome as versatile tag for spectral multiplexing.
Olena S Oliinyk, Anton A Shemetov, Sergei Pletnev, Daria M Shcherbakova, Vladislav V Verkhusha. Nat Commun 2019
56
12


Minimal domain of bacterial phytochrome required for chromophore binding and fluorescence.
Konstantin A Rumyantsev, Daria M Shcherbakova, Natalia I Zakharova, Alexander V Emelyanov, Konstantin K Turoverov, Vladislav V Verkhusha. Sci Rep 2015
36
12

Split-BioID a conditional proteomics approach to monitor the composition of spatiotemporally defined protein complexes.
Isabel Myriam Schopp, Cinthia Claudia Amaya Ramirez, Jerneja Debeljak, Elisa Kreibich, Merle Skribbe, Klemens Wild, Julien Béthune. Nat Commun 2017
95
12

Split ubiquitin as a sensor of protein interactions in vivo.
N Johnsson, A Varshavsky. Proc Natl Acad Sci U S A 1994
544
12


Flavin-based fluorescent proteins: emerging paradigms in biological imaging.
Arnab Mukherjee, Charles M Schroeder. Curr Opin Biotechnol 2015
43
12

Beta-lactamase protein fragment complementation assays as in vivo and in vitro sensors of protein protein interactions.
André Galarneau, Martin Primeau, Louis-Eric Trudeau, Stephen W Michnick. Nat Biotechnol 2002
310
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.