A citation-based method for searching scientific literature

Han Shen, Chenyue Ding, Songtao Yuan, Ting Pan, Duo Li, Hong Li, Boxian Huang, Qinghuai Liu. Mol Ther 2020
Times Cited: 3







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Oxidative stress and autophagy: the clash between damage and metabolic needs.
G Filomeni, D De Zio, F Cecconi. Cell Death Differ 2015
914
66


The mammalian anti-proliferative BTG/Tob protein family.
G Sebastiaan Winkler. J Cell Physiol 2010
195
33

Proliferative Vitreoretinopathy: A Review.
Sana Idrees, Jayanth Sridhar, Ajay E Kuriyan. Int Ophthalmol Clin 2019
44
33

APCluster: an R package for affinity propagation clustering.
Ulrich Bodenhofer, Andreas Kothmeier, Sepp Hochreiter. Bioinformatics 2011
162
33

Role of TGF-beta in proliferative vitreoretinal diseases and ROCK as a therapeutic target.
Takeshi Kita, Yasuaki Hata, Ryoichi Arita, Shuhei Kawahara, Muneki Miura, Shintaro Nakao, Yasutaka Mochizuki, Hiroshi Enaida, Yoshinobu Goto, Hiroaki Shimokawa,[...]. Proc Natl Acad Sci U S A 2008
126
33

Lens and retina regeneration: new perspectives from model organisms.
Karla Barbosa-Sabanero, Andrea Hoffmann, Chelsey Judge, Nicole Lightcap, Panagiotis A Tsonis, Katia Del Rio-Tsonis. Biochem J 2012
52
33

The hedgehog pathway is a modulator of retina regeneration.
Jason R Spence, Mayur Madhavan, John D Ewing, David K Jones, Bret M Lehman, Katia Del Rio-Tsonis. Development 2004
75
33



Insights into the beaded filament of the eye lens.
Ming-Der Perng, Qingjiong Zhang, Roy A Quinlan. Exp Cell Res 2007
37
33


Clustering by passing messages between data points.
Brendan J Frey, Delbert Dueck. Science 2007
979
33

P311 accelerates nerve regeneration of the axotomized facial nerve.
Masashi Fujitani, Satoru Yamagishi, Yong Ho Che, Katsuhiko Hata, Tateki Kubo, Hidetoshi Ino, Masaya Tohyama, Toshihide Yamashita. J Neurochem 2004
41
33

A crystallin gene network in the mouse retina.
Justin P Templeton, XiangDi Wang, Natalie E Freeman, Zhiwei Ma, Anna Lu, Fielding Hejtmancik, Eldon E Geisert. Exp Eye Res 2013
21
33

A membrane receptor for retinol binding protein mediates cellular uptake of vitamin A.
Riki Kawaguchi, Jiamei Yu, Jane Honda, Jane Hu, Julian Whitelegge, Peipei Ping, Patrick Wiita, Dean Bok, Hui Sun. Science 2007
537
33

The chick eye in vision research: An excellent model for the study of ocular disease.
C Ellis Wisely, Javed A Sayed, Heather Tamez, Chris Zelinka, Mohamed H Abdel-Rahman, Andy J Fischer, Colleen M Cebulla. Prog Retin Eye Res 2017
35
33

Human phosphatase CDC14A regulates actin organization through dephosphorylation of epithelial protein lost in neoplasm.
Nan-Peng Chen, Borhan Uddin, Robert Hardt, Wen Ding, Marko Panic, Ilaria Lucibello, Patricia Kammerer, Thomas Ruppert, Elmar Schiebel. Proc Natl Acad Sci U S A 2017
15
33

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool.
Edward Y Chen, Christopher M Tan, Yan Kou, Qiaonan Duan, Zichen Wang, Gabriela Vaz Meirelles, Neil R Clark, Avi Ma'ayan. BMC Bioinformatics 2013
33

DISEASES: text mining and data integration of disease-gene associations.
Sune Pletscher-Frankild, Albert Pallejà, Kalliopi Tsafou, Janos X Binder, Lars Juhl Jensen. Methods 2015
247
33

The proneural basic helix-loop-helix gene ascl1a is required for retina regeneration.
Blake V Fausett, Jessica D Gumerson, Daniel Goldman. J Neurosci 2008
146
33

A transcriptome for the study of early processes of retinal regeneration in the adult newt, Cynops pyrrhogaster.
Kenta Nakamura, Md Rafiqul Islam, Miyako Takayanagi, Hirofumi Yasumuro, Wataru Inami, Ailidana Kunahong, Roman M Casco-Robles, Fubito Toyama, Chikafumi Chiba. PLoS One 2014
25
33

Downregulation of Otx2 in the dedifferentiated RPE cells of regenerating newt retina.
Sanae Sakami, Osamu Hisatomi, Shunsuke Sakakibara, Janice Liu, Thomas A Reh, Fumio Tokunaga. Brain Res Dev Brain Res 2005
23
33


Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
33


Mechanisms of fibrosis: therapeutic translation for fibrotic disease.
Thomas A Wynn, Thirumalai R Ramalingam. Nat Med 2012
33


GADD45 proteins: central players in tumorigenesis.
R E Tamura, J F de Vasconcellos, D Sarkar, T A Libermann, P B Fisher, L F Zerbini. Curr Mol Med 2012
183
33

Restoration of mesenchymal retinal pigmented epithelial cells by TGFβ pathway inhibitors: implications for age-related macular degeneration.
Monte J Radeke, Carolyn M Radeke, Ying-Hsuan Shih, Jane Hu, Dean Bok, Lincoln V Johnson, Pete J Coffey. Genome Med 2015
62
33

Axin, an inhibitor of the Wnt signalling pathway, interacts with beta-catenin, GSK-3beta and APC and reduces the beta-catenin level.
T Nakamura, F Hamada, T Ishidate, K Anai, K Kawahara, K Toyoshima, T Akiyama. Genes Cells 1998
245
33

MultiQC: summarize analysis results for multiple tools and samples in a single report.
Philip Ewels, Måns Magnusson, Sverker Lundin, Max Käller. Bioinformatics 2016
33

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
33

Bone morphogenetic proteins specify the retinal pigment epithelium in the chick embryo.
Frank Müller, Hermann Rohrer, Astrid Vogel-Höpker. Development 2007
83
33

Neural retina identity is specified by lens-derived BMP signals.
Tanushree Pandit, Vijay K Jidigam, Cedric Patthey, Lena Gunhaga. Development 2015
25
33

Neuromedin U and its receptors: structure, function, and physiological roles.
Paul J Brighton, Philip G Szekeres, Gary B Willars. Pharmacol Rev 2004
187
33

Retinal pigment epithelium is protected against apoptosis by alphaB-crystallin.
Claudia S Alge, Siegfried G Priglinger, Aljoscha S Neubauer, Anselm Kampik, Markus Zillig, Hans Bloemendal, Ulrich Welge-Lussen. Invest Ophthalmol Vis Sci 2002
115
33

The newt reprograms mature RPE cells into a unique multipotent state for retinal regeneration.
Md Rafiqul Islam, Kenta Nakamura, Martin Miguel Casco-Robles, Ailidana Kunahong, Wataru Inami, Fubito Toyama, Fumiaki Maruo, Chikafumi Chiba. Sci Rep 2014
29
33

Transgenic expression of the proneural transcription factor Ascl1 in Müller glia stimulates retinal regeneration in young mice.
Yumi Ueki, Matthew S Wilken, Kristen E Cox, Laura Chipman, Nikolas Jorstad, Kristen Sternhagen, Milesa Simic, Kristy Ullom, Masato Nakafuku, Thomas A Reh. Proc Natl Acad Sci U S A 2015
130
33

Alternative splicing of neuroligin and its protein distribution in the outer plexiform layer of the chicken retina.
Karl J Wahlin, Laszlo Hackler, Ruben Adler, Donald J Zack. J Comp Neurol 2010
11
33


Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap.
Jüri Reimand, Ruth Isserlin, Veronique Voisin, Mike Kucera, Christian Tannus-Lopes, Asha Rostamianfar, Lina Wadi, Mona Meyer, Jeff Wong, Changjiang Xu,[...]. Nat Protoc 2019
478
33

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
33

Extracellular matrix remodeling during retinal development.
Jacqueline Reinhard, Stephanie C Joachim, Andreas Faissner. Exp Eye Res 2015
29
33


Cgnl1, an endothelial junction complex protein, regulates GTPase mediated angiogenesis.
Ihsan Chrifi, Dorien Hermkens, Maarten M Brandt, Christian G M van Dijk, Petra E Bürgisser, Remco Haasdijk, Jiayi Pei, Esther H M van de Kamp, Changbin Zhu, Lau Blonden,[...]. Cardiovasc Res 2017
12
33

Complement anaphylatoxin C3a is a potent inducer of embryonic chick retina regeneration.
Tracy Haynes, Agustin Luz-Madrigal, Edimara S Reis, Nancy P Echeverri Ruiz, Erika Grajales-Esquivel, Apostolia Tzekou, Panagiotis A Tsonis, John D Lambris, Katia Del Rio-Tsonis. Nat Commun 2013
64
33

Turning the fate of reprogramming cells from retinal disorder to regeneration by Pax6 in newts.
Martin Miguel Casco-Robles, Md Rafiqul Islam, Wataru Inami, Hibiki Vincent Tanaka, Ailidana Kunahong, Hirofumi Yasumuro, Shiori Hanzawa, Roman Martin Casco-Robles, Fubito Toyama, Fumiaki Maruo,[...]. Sci Rep 2016
14
33


The phosphatase Cdc14 triggers mitotic exit by reversal of Cdk-dependent phosphorylation.
R Visintin, K Craig, E S Hwang, S Prinz, M Tyers, A Amon. Mol Cell 1998
611
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.