A citation-based method for searching scientific literature

Characterization of long G4-rich enhancer-associated genomic regions engaging in a novel loop:loop 'G4 Kissing' interaction.
Jonathan D Williams, Dominika Houserova, Bradley R Johnson, Brad Dyniewski, Alexandra Berroyer, Hannah French, Addison A Barchie, Dakota D Bilbrey, Jeffrey D Demeis, Kanesha R Ghee, Alexandra G Hughes, Naden W Kreitz, Cameron H McInnis, Susanna C Pudner, Monica N Reeves, Ashlyn N Stahly, Ana Turcu, Brianna C Watters, Grant T Daly, Raymond J Langley, Mark N Gillespie, Aishwarya Prakash, Erik D Larson, Mohan V Kasukurthi, Jingshan Huang, Sue Jinks-Robertson, Glen M Borchert. Nucleic Acids Res 2020
Times Cited: 9






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List of co-cited articles
71 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes.
Johanna Eddy, Nancy Maizels. Nucleic Acids Res 2008
211
5
55

DNA secondary structures: stability and function of G-quadruplex structures.
Matthew L Bochman, Katrin Paeschke, Virginia A Zakian. Nat Rev Genet 2012
836
4
44

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
1182
4
44

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
427
4
44

CX-5461 is a DNA G-quadruplex stabilizer with selective lethality in BRCA1/2 deficient tumours.
Hong Xu, Marco Di Antonio, Steven McKinney, Veena Mathew, Brandon Ho, Nigel J O'Neil, Nancy Dos Santos, Jennifer Silvester, Vivien Wei, Jessica Garcia,[...]. Nat Commun 2017
273
4
44

Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae.
Steve G Hershman, Qijun Chen, Julia Y Lee, Marina L Kozak, Peng Yue, Li-San Wang, F Brad Johnson. Nucleic Acids Res 2008
209
3
33

Epigenetic instability due to defective replication of structured DNA.
Peter Sarkies, Charlie Reams, Laura J Simpson, Julian E Sale. Mol Cell 2010
200
3
33

The Interplay between G-quadruplex and Transcription.
Nayun Kim. Curr Med Chem 2019
64
3
33

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.
Pooja Rawal, Veera Bhadra Rao Kummarasetti, Jinoy Ravindran, Nirmal Kumar, Kangkan Halder, Rakesh Sharma, Mitali Mukerji, Swapan Kumar Das, Shantanu Chowdhury. Genome Res 2006
237
3
33

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
1583
3
33

Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences.
Albino Bacolla, John A Tainer, Karen M Vasquez, David N Cooper. Nucleic Acids Res 2016
85
3
33

Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
705
3
33

Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription.
Zhuo Du, Yiqiang Zhao, Ning Li. Genome Res 2008
114
3
33

Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome.
Fedor Kouzine, Damian Wojtowicz, Laura Baranello, Arito Yamane, Steevenson Nelson, Wolfgang Resch, Kyong-Rim Kieffer-Kwon, Craig J Benham, Rafael Casellas, Teresa M Przytycka,[...]. Cell Syst 2017
102
3
33

Integrative characterization of G-Quadruplexes in the three-dimensional chromatin structure.
Yue Hou, Fuyu Li, Rongxin Zhang, Sheng Li, Hongde Liu, Zhaohui S Qin, Xiao Sun. Epigenetics 2019
32
3
33

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
879
3
33

Promoter G-quadruplexes and transcription factors cooperate to shape the cell type-specific transcriptome.
Sara Lago, Matteo Nadai, Filippo M Cernilogar, Maryam Kazerani, Helena Domíniguez Moreno, Gunnar Schotta, Sara N Richter. Nat Commun 2021
35
3
33

Enhancer-promoter interaction facilitated by transiently forming G-quadruplexes.
Hedi Hegyi. Sci Rep 2015
30
3
33

Single-molecule visualization of DNA G-quadruplex formation in live cells.
Marco Di Antonio, Aleks Ponjavic, Antanas Radzevičius, Rohan T Ranasinghe, Marco Catalano, Xiaoyun Zhang, Jiazhen Shen, Lisa-Maria Needham, Steven F Lee, David Klenerman,[...]. Nat Chem 2020
114
3
33

Whole genome experimental maps of DNA G-quadruplexes in multiple species.
Giovanni Marsico, Vicki S Chambers, Aleksandr B Sahakyan, Patrick McCauley, Jonathan M Boutell, Marco Di Antonio, Shankar Balasubramanian. Nucleic Acids Res 2019
154
3
33

G4-associated human diseases.
Nancy Maizels. EMBO Rep 2015
192
2
22

Guanine repeat-containing sequences confer transcription-dependent instability in an orientation-specific manner in yeast.
Nayun Kim, Sue Jinks-Robertson. DNA Repair (Amst) 2011
36
2
22

Identification and characterization of nucleolin as a c-myc G-quadruplex-binding protein.
Verónica González, Kexiao Guo, Laurence Hurley, Daekyu Sun. J Biol Chem 2009
213
2
22

Protein polyphosphorylation of lysine residues by inorganic polyphosphate.
Cristina Azevedo, Thomas Livermore, Adolfo Saiardi. Mol Cell 2015
86
2
22

The G4 genome.
Nancy Maizels, Lucas T Gray. PLoS Genet 2013
347
2
22

Nucleolin: The most abundant multifunctional phosphoprotein of nucleolus.
Marjan M Tajrishi, Renu Tuteja, Narendra Tuteja. Commun Integr Biol 2011
142
2
22

FANCJ helicase defective in Fanconia anemia and breast cancer unwinds G-quadruplex DNA to defend genomic stability.
Yuliang Wu, Kazuo Shin-ya, Robert M Brosh. Mol Cell Biol 2008
305
2
22

Sites of instability in the human TCF3 (E2A) gene adopt G-quadruplex DNA structures in vitro.
Jonathan D Williams, Sara Fleetwood, Alexandra Berroyer, Nayun Kim, Erik D Larson. Front Genet 2015
14
2
22

The roles of nucleolin subcellular localization in cancer.
Caroline Madeleine Berger, Xavier Gaume, Philippe Bouvet. Biochimie 2015
129
2
22

Tetraplex DNA and its interacting proteins.
Michael Fry. Front Biosci 2007
125
2
22

RGG-box in hnRNPA1 specifically recognizes the telomere G-quadruplex DNA and enhances the G-quadruplex unfolding ability of UP1 domain.
Meenakshi Ghosh, Mahavir Singh. Nucleic Acids Res 2018
36
2
22

The C-terminus of nucleolin promotes the formation of the c-MYC G-quadruplex and inhibits c-MYC promoter activity.
Verónica González, Laurence H Hurley. Biochemistry 2010
84
2
22

G-quadruplex-induced instability during leading-strand replication.
Judith Lopes, Aurèle Piazza, Rodrigo Bermejo, Barry Kriegsman, Arianna Colosio, Marie-Paule Teulade-Fichou, Marco Foiani, Alain Nicolas. EMBO J 2011
220
2
22

G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae.
John A Capra, Katrin Paeschke, Mona Singh, Virginia A Zakian. PLoS Comput Biol 2010
170
2
22

The role of topoisomerase I in suppressing genome instability associated with a highly transcribed guanine-rich sequence is not restricted to preventing RNA:DNA hybrid accumulation.
Puja Yadav, Norah Owiti, Nayun Kim. Nucleic Acids Res 2016
24
2
22

Determination of mitotic recombination rates by fluctuation analysis in Saccharomyces cerevisiae.
Rachelle Miller Spell, Sue Jinks-Robertson. Methods Mol Biol 2004
76
2
22

Topoisomerase I plays a critical role in suppressing genome instability at a highly transcribed G-quadruplex-forming sequence.
Puja Yadav, Victoria Harcy, Juan Lucas Argueso, Margaret Dominska, Sue Jinks-Robertson, Nayun Kim. PLoS Genet 2014
33
2
22

High affinity interactions of nucleolin with G-G-paired rDNA.
L A Hanakahi, H Sun, N Maizels. J Biol Chem 1999
179
2
22

Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate.
Wilfried M Guiblet, Marzia A Cremona, Monika Cechova, Robert S Harris, Iva Kejnovská, Eduard Kejnovsky, Kristin Eckert, Francesca Chiaromonte, Kateryna D Makova. Genome Res 2018
27
2
22

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential.
Robert Hänsel-Hertsch, Marco Di Antonio, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2017
454
2
22

Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome.
Wilfried M Guiblet, Marzia A Cremona, Robert S Harris, Di Chen, Kristin A Eckert, Francesca Chiaromonte, Yi-Fei Huang, Kateryna D Makova. Nucleic Acids Res 2021
30
2
22

Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis.
Ilias Georgakopoulos-Soares, Sandro Morganella, Naman Jain, Martin Hemberg, Serena Nik-Zainal. Genome Res 2018
56
2
22

G-Quadruplexes in DNA Replication: A Problem or a Necessity?
Anne-Laure Valton, Marie-Noëlle Prioleau. Trends Genet 2016
82
2
22

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
1258
2
22

Involvement of G-quadruplex regions in mammalian replication origin activity.
Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, Laurent Lacroix, Aurore Guédin, Jean-Louis Mergny, Julia Damaschke, Aloys Schepers,[...]. Nat Commun 2019
67
2
22

G4 motifs affect origin positioning and efficiency in two vertebrate replicators.
Anne-Laure Valton, Vahideh Hassan-Zadeh, Ingrid Lema, Nicole Boggetto, Patrizia Alberti, Carole Saintomé, Jean-Francois Riou, Marie-Noëlle Prioleau. EMBO J 2014
125
2
22

DNA G-quadruplex structures mold the DNA methylome.
Shi-Qing Mao, Avazeh T Ghanbarian, Jochen Spiegel, Sergio Martínez Cuesta, Dario Beraldi, Marco Di Antonio, Giovanni Marsico, Robert Hänsel-Hertsch, David Tannahill, Shankar Balasubramanian. Nat Struct Mol Biol 2018
106
2
22

Topological impact of noncanonical DNA structures on Klenow fragment of DNA polymerase.
Shuntaro Takahashi, John A Brazier, Naoki Sugimoto. Proc Natl Acad Sci U S A 2017
66
2
22

The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
322
2
22

5'-UTR RNA G-quadruplexes: translation regulation and targeting.
Anthony Bugaut, Shankar Balasubramanian. Nucleic Acids Res 2012
424
2
22


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.

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