A citation-based method for searching scientific literature

Helene M Gylling, Cristina Gonzalez-Aguilera, Martin A Smith, Dominik C Kaczorowski, Anja Groth, Anders H Lund. RNA 2020
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA ends alter the molecular composition and localization of Ku multicomponent complexes.
Guillaume Adelmant, Anne S Calkins, Brijesh K Garg, Joseph D Card, Manor Askenazi, Alex Miron, Bijan Sobhian, Yi Zhang, Yoshihiro Nakatani, Pamela A Silver,[...]. Mol Cell Proteomics 2012
25
100

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs.
Benedikt M Beckmann, Rastislav Horos, Bernd Fischer, Alfredo Castello, Katrin Eichelbaum, Anne-Marie Alleaume, Thomas Schwarzl, Tomaž Curk, Sophia Foehr, Wolfgang Huber,[...]. Nat Commun 2015
230
100

Functional interplay of the Mre11 nuclease and Ku in the response to replication-associated DNA damage.
Steven S Foster, Alessia Balestrini, John H J Petrini. Mol Cell Biol 2011
76
100

ATM antagonizes NHEJ proteins assembly and DNA-ends synapsis at single-ended DNA double strand breaks.
Sébastien Britton, Pauline Chanut, Christine Delteil, Nadia Barboule, Philippe Frit, Patrick Calsou. Nucleic Acids Res 2020
4
100

Fork Cleavage-Religation Cycle and Active Transcription Mediate Replication Restart after Fork Stalling at Co-transcriptional R-Loops.
Nagaraja Chappidi, Zuzana Nascakova, Barbora Boleslavska, Ralph Zellweger, Esin Isik, Martin Andrs, Shruti Menon, Jana Dobrovolna, Chiara Balbo Pogliano, Joao Matos,[...]. Mol Cell 2020
29
100

The MRE11 GAR motif regulates DNA double-strand break processing and ATR activation.
Zhenbao Yu, Gillian Vogel, Yan Coulombe, Danielle Dubeau, Elizabeth Spehalski, Josée Hébert, David O Ferguson, Jean Yves Masson, Stéphane Richard. Cell Res 2012
49
100

The molecular basis and disease relevance of non-homologous DNA end joining.
Bailin Zhao, Eli Rothenberg, Dale A Ramsden, Michael R Lieber. Nat Rev Mol Cell Biol 2020
33
100

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
322
100

53BP1 exchanges slowly at the sites of DNA damage and appears to require RNA for its association with chromatin.
Fiona Pryde, Shirin Khalili, Kathryn Robertson, Jim Selfridge, Ann-Marie Ritchie, David W Melton, Denis Jullien, Yasuhisa Adachi. J Cell Sci 2005
92
100

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
109
100

Eukaryotic DNA Replication Fork.
Peter M J Burgers, Thomas A Kunkel. Annu Rev Biochem 2017
185
100

RNA at DNA Double-Strand Breaks: The Challenge of Dealing with DNA:RNA Hybrids.
Judit Domingo-Prim, Franziska Bonath, Neus Visa. Bioessays 2020
10
100

The plasticity of DNA replication forks in response to clinically relevant genotoxic stress.
Matteo Berti, David Cortez, Massimo Lopes. Nat Rev Mol Cell Biol 2020
32
100

Long noncoding RNA LINP1 regulates repair of DNA double-strand breaks in triple-negative breast cancer.
Youyou Zhang, Qun He, Zhongyi Hu, Yi Feng, Lingling Fan, Zhaoqing Tang, Jiao Yuan, Weiwei Shan, Chunsheng Li, Xiaowen Hu,[...]. Nat Struct Mol Biol 2016
143
100

Super-resolution visualization of distinct stalled and broken replication fork structures.
Donna R Whelan, Wei Ting C Lee, Frances Marks, Yu Tina Kong, Yandong Yin, Eli Rothenberg. PLoS Genet 2020
6
100

The human telomerase RNA component, hTR, activates the DNA-dependent protein kinase to phosphorylate heterogeneous nuclear ribonucleoprotein A1.
Nicholas S Y Ting, Brant Pohorelic, Yaping Yu, Susan P Lees-Miller, Tara L Beattie. Nucleic Acids Res 2009
42
100

RNA polymerase III is required for the repair of DNA double-strand breaks by homologous recombination.
Sijie Liu, Yu Hua, Jingna Wang, Lingyan Li, Junjie Yuan, Bo Zhang, Ziyang Wang, Jianguo Ji, Daochun Kong. Cell 2021
12
100

BRCA2 controls DNA:RNA hybrid level at DSBs by mediating RNase H2 recruitment.
Giuseppina D'Alessandro, Donna Rose Whelan, Sean Michael Howard, Valerio Vitelli, Xavier Renaudin, Marek Adamowicz, Fabio Iannelli, Corey Winston Jones-Weinert, MiYoung Lee, Valentina Matti,[...]. Nat Commun 2018
77
100

ATAD5 restricts R-loop formation through PCNA unloading and RNA helicase maintenance at the replication fork.
Sangin Kim, Nalae Kang, Su Hyung Park, James Wells, Taejoo Hwang, Eunjin Ryu, Byung-Gyu Kim, Sunyoung Hwang, Seong-Jung Kim, Sukhyun Kang,[...]. Nucleic Acids Res 2020
7
100

Human Ku70/80 interacts directly with hTR, the RNA component of human telomerase.
Nicholas S Y Ting, Yaping Yu, Brant Pohorelic, Susan P Lees-Miller, Tara L Beattie. Nucleic Acids Res 2005
72
100

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
162
100

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Alexander G Baltz, Mathias Munschauer, Björn Schwanhäusser, Alexandra Vasile, Yasuhiro Murakawa, Markus Schueler, Noah Youngs, Duncan Penfold-Brown, Kevin Drew, Miha Milek,[...]. Mol Cell 2012
705
100

Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS).
Rayner M L Queiroz, Tom Smith, Eneko Villanueva, Maria Marti-Solano, Mie Monti, Mariavittoria Pizzinga, Dan-Mircea Mirea, Manasa Ramakrishna, Robert F Harvey, Veronica Dezi,[...]. Nat Biotechnol 2019
95
100

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
321
100

Sen1 Is Recruited to Replication Forks via Ctf4 and Mrc1 and Promotes Genome Stability.
Rowin Appanah, Emma Claire Lones, Umberto Aiello, Domenico Libri, Giacomo De Piccoli. Cell Rep 2020
7
100

Regulation of DNA repair pathway choice in S and G2 phases by the NHEJ inhibitor CYREN.
Nausica Arnoult, Adriana Correia, Jiao Ma, Anna Merlo, Sara Garcia-Gomez, Marija Maric, Marco Tognetti, Christopher W Benner, Simon J Boulton, Alan Saghatelian,[...]. Nature 2017
92
100

A novel cytoprotective function for the DNA repair protein Ku in regulating p53 mRNA translation and function.
Assala Lamaa, Morgane Le Bras, Nicolas Skuli, Sébastien Britton, Philippe Frit, Patrick Calsou, Hervé Prats, Anne Cammas, Stefania Millevoi. EMBO Rep 2016
16
100

Ku stabilizes replication forks in the absence of Brc1.
Arancha Sánchez, Paul Russell. PLoS One 2015
7
100


Senataxin Ortholog Sen1 Limits DNA:RNA Hybrid Accumulation at DNA Double-Strand Breaks to Control End Resection and Repair Fidelity.
Chetan C Rawal, Luca Zardoni, Matteo Di Terlizzi, Elena Galati, Alessandra Brambati, Federico Lazzaro, Giordano Liberi, Achille Pellicioli. Cell Rep 2020
9
100

Homologous recombination as a mechanism to recognize repetitive DNA sequences in an RNAi pathway.
Zhenyu Zhang, Shwu-Shin Chang, Zhenying Zhang, Zhihong Xue, Hanxing Zhang, Shaojie Li, Yi Liu. Genes Dev 2013
27
100

DNA polymerase θ (POLQ) is important for repair of DNA double-strand breaks caused by fork collapse.
Zi Wang, Yadong Song, Shibo Li, Sunil Kurian, Rong Xiang, Takuya Chiba, Xiaohua Wu. J Biol Chem 2019
30
100


Classical non-homologous end-joining pathway utilizes nascent RNA for error-free double-strand break repair of transcribed genes.
Anirban Chakraborty, Nisha Tapryal, Tatiana Venkova, Nobuo Horikoshi, Raj K Pandita, Altaf H Sarker, Partha S Sarkar, Tej K Pandita, Tapas K Hazra. Nat Commun 2016
89
100

DNA repair by RNA: Templated, or not templated, that is the question.
Chance Meers, Havva Keskin, Francesca Storici. DNA Repair (Amst) 2016
37
100

Ribonucleotide incorporation enables repair of chromosome breaks by nonhomologous end joining.
John M Pryor, Michael P Conlin, Juan Carvajal-Garcia, Megan E Luedeman, Adam J Luthman, George W Small, Dale A Ramsden. Science 2018
38
100

Specificity of end resection pathways for double-strand break regions containing ribonucleotides and base lesions.
James M Daley, Nozomi Tomimatsu, Grace Hooks, Weibin Wang, Adam S Miller, Xiaoyu Xue, Kevin A Nguyen, Hardeep Kaur, Elizabeth Williamson, Bipasha Mukherjee,[...]. Nat Commun 2020
8
100


TIRR inhibits the 53BP1-p53 complex to alter cell-fate programs.
Nishita Parnandi, Veronica Rendo, Gaofeng Cui, Maria Victoria Botuyan, Michaela Remisova, Huy Nguyen, Pascal Drané, Rameen Beroukhim, Matthias Altmeyer, Georges Mer,[...]. Mol Cell 2021
2
100

XRN2 Links Transcription Termination to DNA Damage and Replication Stress.
Julio C Morales, Patricia Richard, Praveen L Patidar, Edward A Motea, Tuyen T Dang, James L Manley, David A Boothman. PLoS Genet 2016
52
100

ATM orchestrates the DNA-damage response to counter toxic non-homologous end-joining at broken replication forks.
Gabriel Balmus, Domenic Pilger, Julia Coates, Mukerrem Demir, Matylda Sczaniecka-Clift, Ana C Barros, Michael Woods, Beiyuan Fu, Fengtang Yang, Elisabeth Chen,[...]. Nat Commun 2019
50
100

Functional transcription promoters at DNA double-strand breaks mediate RNA-driven phase separation of damage-response factors.
Fabio Pessina, Fabio Giavazzi, Yandong Yin, Ubaldo Gioia, Valerio Vitelli, Alessandro Galbiati, Sara Barozzi, Massimiliano Garre, Amanda Oldani, Andrew Flaus,[...]. Nat Cell Biol 2019
78
100

FANCD2 Maintains Fork Stability in BRCA1/2-Deficient Tumors and Promotes Alternative End-Joining DNA Repair.
Zeina Kais, Beatrice Rondinelli, Amie Holmes, Colin O'Leary, David Kozono, Alan D D'Andrea, Raphael Ceccaldi. Cell Rep 2016
84
100

DEAD Box 1 Facilitates Removal of RNA and Homologous Recombination at DNA Double-Strand Breaks.
Lei Li, Devon R Germain, Ho-Yin Poon, Matthew R Hildebrandt, Elizabeth A Monckton, Darin McDonald, Michael J Hendzel, Roseline Godbout. Mol Cell Biol 2016
66
100

DNA-PKcs has KU-dependent function in rRNA processing and haematopoiesis.
Zhengping Shao, Ryan A Flynn, Jennifer L Crowe, Yimeng Zhu, Jialiang Liang, Wenxia Jiang, Fardin Aryan, Patrick Aoude, Carolyn R Bertozzi, Verna M Estes,[...]. Nature 2020
21
100

XLF and H2AX function in series to promote replication fork stability.
Bo-Ruei Chen, Annabel Quinet, Andrea K Byrum, Jessica Jackson, Matteo Berti, Saravanabhavan Thangavel, Andrea L Bredemeyer, Issa Hindi, Nima Mosammaparast, Jessica K Tyler,[...]. J Cell Biol 2019
7
100

Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks.
Flavia Michelini, Sethuramasundaram Pitchiaya, Valerio Vitelli, Sheetal Sharma, Ubaldo Gioia, Fabio Pessina, Matteo Cabrini, Yejun Wang, Ilaria Capozzo, Fabio Iannelli,[...]. Nat Cell Biol 2017
133
100

RNA recognition by the DNA end-binding Ku heterodimer.
Andrew B Dalby, Karen J Goodrich, Jennifer S Pfingsten, Thomas R Cech. RNA 2013
19
100

LRIK interacts with the Ku70-Ku80 heterodimer enhancing the efficiency of NHEJ repair.
Dan Wang, Zheng Zhou, Erzhong Wu, Can Ouyang, Guifeng Wei, Yunfei Wang, Dandan He, Ya Cui, Dongdong Zhang, Xiaomin Chen,[...]. Cell Death Differ 2020
4
100

The end-joining factor Ku acts in the end-resection of double strand break-free arrested replication forks.
Ana Teixeira-Silva, Anissia Ait Saada, Julien Hardy, Ismail Iraqui, Marina Charlotte Nocente, Karine Fréon, Sarah A E Lambert. Nat Commun 2017
48
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.