A citation-based method for searching scientific literature

K Abraham Peele, T Srihansa, S Krupanidhi, Vijaya Sai Ayyagari, T C Venkateswarulu. J Biomol Struct Dyn 2021
Times Cited: 42







List of co-cited articles
412 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Reverse vaccinology approach to design a novel multi-epitope vaccine candidate against COVID-19: an in silico study.
Maryam Enayatkhani, Mehdi Hasaniazad, Sobhan Faezi, Hamed Gouklani, Parivash Davoodian, Nahid Ahmadi, Mohammad Ali Einakian, Afsaneh Karmostaji, Khadijeh Ahmadi. J Biomol Struct Dyn 2021
116
35

JCat: a novel tool to adapt codon usage of a target gene to its potential expression host.
Andreas Grote, Karsten Hiller, Maurice Scheer, Richard Münch, Bernd Nörtemann, Dietmar C Hempel, Dieter Jahn. Nucleic Acids Res 2005
526
33


UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
26


A candidate multi-epitope vaccine against SARS-CoV-2.
Tamalika Kar, Utkarsh Narsaria, Srijita Basak, Debashrito Deb, Filippo Castiglione, David M Mueller, Anurag P Srivastava. Sci Rep 2020
93
26

GalaxyRefine: Protein structure refinement driven by side-chain repacking.
Lim Heo, Hahnbeom Park, Chaok Seok. Nucleic Acids Res 2013
321
23

The ClusPro web server for protein-protein docking.
Dima Kozakov, David R Hall, Bing Xia, Kathryn A Porter, Dzmitry Padhorny, Christine Yueh, Dmitri Beglov, Sandor Vajda. Nat Protoc 2017
870
23

In silico approach for predicting toxicity of peptides and proteins.
Sudheer Gupta, Pallavi Kapoor, Kumardeep Chaudhary, Ankur Gautam, Rahul Kumar, Gajendra P S Raghava. PLoS One 2013
407
23

In-silico design of a multi-epitope vaccine candidate against onchocerciasis and related filarial diseases.
Robert Adamu Shey, Stephen Mbigha Ghogomu, Kevin Kum Esoh, Neba Derrick Nebangwa, Cabirou Mounchili Shintouo, Nkemngo Francis Nongley, Bertha Fru Asa, Ferdinand Njume Ngale, Luc Vanhamme, Jacob Souopgui. Sci Rep 2019
114
21

ElliPro: a new structure-based tool for the prediction of antibody epitopes.
Julia Ponomarenko, Huynh-Hoa Bui, Wei Li, Nicholas Fusseder, Philip E Bourne, Alessandro Sette, Bjoern Peters. BMC Bioinformatics 2008
543
21

AllerTOP v.2--a server for in silico prediction of allergens.
Ivan Dimitrov, Ivan Bangov, Darren R Flower, Irini Doytchinova. J Mol Model 2014
201
21

AllergenFP: allergenicity prediction by descriptor fingerprints.
Ivan Dimitrov, Lyudmila Naneva, Irini Doytchinova, Ivan Bangov. Bioinformatics 2014
188
19

Designing of interferon-gamma inducing MHC class-II binders.
Sandeep Kumar Dhanda, Pooja Vir, Gajendra P S Raghava. Biol Direct 2013
212
19

Design of a peptide-based subunit vaccine against novel coronavirus SARS-CoV-2.
Parismita Kalita, Aditya K Padhi, Kam Y J Zhang, Timir Tripathi. Microb Pathog 2020
100
19


Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.
Mette V Larsen, Claus Lundegaard, Kasper Lamberth, Soren Buus, Ole Lund, Morten Nielsen. BMC Bioinformatics 2007
384
19

Development of epitope-based peptide vaccine against novel coronavirus 2019 (SARS-COV-2): Immunoinformatics approach.
Manojit Bhattacharya, Ashish R Sharma, Prasanta Patra, Pratik Ghosh, Garima Sharma, Bidhan C Patra, Sang-Soo Lee, Chiranjib Chakraborty. J Med Virol 2020
195
19

Designing a multi-epitope vaccine against SARS-CoV-2: an immunoinformatics approach.
Abdus Samad, Foysal Ahammad, Zulkar Nain, Rahat Alam, Raihan Rahman Imon, Mahadi Hasan, Md Shahedur Rahman. J Biomol Struct Dyn 2022
42
19

In-silico identification of new inhibitors for Low-density lipoprotein receptor-related protein6 (LRP6).
Maryam Enayatkhani, Mona Salimi, Kayhan Azadmanesh, Ladan Teimoori-Toolabi. J Biomol Struct Dyn 2020
37
18

Potential anti-viral activity of approved repurposed drug against main protease of SARS-CoV-2: an in silico based approach.
Saurov Mahanta, Purvita Chowdhury, Neelutpal Gogoi, Nabajyoti Goswami, Debajit Borah, Rupesh Kumar, Dipak Chetia, Probodh Borah, Alak K Buragohain, Bhaskarjyoti Gogoi. J Biomol Struct Dyn 2021
41
17



Peptide-like and small-molecule inhibitors against Covid-19.
Suyash Pant, Meenakshi Singh, V Ravichandiran, U S N Murty, Hemant Kumar Srivastava. J Biomol Struct Dyn 2021
163
16

Exploring dengue genome to construct a multi-epitope based subunit vaccine by utilizing immunoinformatics approach to battle against dengue infection.
Mudassar Ali, Rajan Kumar Pandey, Nazia Khatoon, Aruna Narula, Amit Mishra, Vijay Kumar Prajapati. Sci Rep 2017
118
16


BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes.
Martin Closter Jespersen, Bjoern Peters, Morten Nielsen, Paolo Marcatili. Nucleic Acids Res 2017
441
16

Targeting SARS-CoV-2: a systematic drug repurposing approach to identify promising inhibitors against 3C-like proteinase and 2'-O-ribose methyltransferase.
Rameez Jabeer Khan, Rajat Kumar Jha, Gizachew Muluneh Amera, Monika Jain, Ekampreet Singh, Amita Pathak, Rashmi Prabha Singh, Jayaraman Muthukumaran, Amit Kumar Singh. J Biomol Struct Dyn 2021
174
14

Repurposing of chloroquine and some clinically approved antiviral drugs as effective therapeutics to prevent cellular entry and replication of coronavirus.
Akinwunmi O Adeoye, Babatunde Joseph Oso, Ige Francis Olaoye, Habibu Tijjani, Ahmed I Adebayo. J Biomol Struct Dyn 2021
44
14

Identification of potential molecules against COVID-19 main protease through structure-guided virtual screening approach.
Lovika Mittal, Anita Kumari, Mitul Srivastava, Mrityunjay Singh, Shailendra Asthana. J Biomol Struct Dyn 2021
97
14

An in-silico evaluation of different Saikosaponins for their potency against SARS-CoV-2 using NSP15 and fusion spike glycoprotein as targets.
Saurabh K Sinha, Anshul Shakya, Satyendra K Prasad, Shashikant Singh, Nilambari S Gurav, Rupali S Prasad, Shailendra S Gurav. J Biomol Struct Dyn 2021
91
14


Moroccan Medicinal plants as inhibitors against SARS-CoV-2 main protease: Computational investigations.
I Aanouz, A Belhassan, K El-Khatabi, T Lakhlifi, M El-Ldrissi, M Bouachrine. J Biomol Struct Dyn 2021
144
14

Drug repurposing for coronavirus (COVID-19): in silico screening of known drugs against coronavirus 3CL hydrolase and protease enzymes.
Ammar D Elmezayen, Anas Al-Obaidi, Alp Tegin Şahin, Kemal Yelekçi. J Biomol Struct Dyn 2021
195
14

Using integrated computational approaches to identify safe and rapid treatment for SARS-CoV-2.
Khattab Al-Khafaji, Dunya Al-Duhaidahawi, Tugba Taskin Tok. J Biomol Struct Dyn 2021
70
14


Structure of Mpro from SARS-CoV-2 and discovery of its inhibitors.
Zhenming Jin, Xiaoyu Du, Yechun Xu, Yongqiang Deng, Meiqin Liu, Yao Zhao, Bing Zhang, Xiaofeng Li, Leike Zhang, Chao Peng,[...]. Nature 2020
14


AlgPred: prediction of allergenic proteins and mapping of IgE epitopes.
Sudipto Saha, G P S Raghava. Nucleic Acids Res 2006
339
14

Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.
Alexandra C Walls, Young-Jun Park, M Alejandra Tortorici, Abigail Wall, Andrew T McGuire, David Veesler. Cell 2020
14


Design of a Multiepitope-Based Peptide Vaccine against the E Protein of Human COVID-19: An Immunoinformatics Approach.
Miyssa I Abdelmageed, Abdelrahman H Abdelmoneim, Mujahed I Mustafa, Nafisa M Elfadol, Naseem S Murshed, Shaza W Shantier, Abdelrafie M Makhawi. Biomed Res Int 2020
67
14

Predicting population coverage of T-cell epitope-based diagnostics and vaccines.
Huynh-Hoa Bui, John Sidney, Kenny Dinh, Scott Southwood, Mark J Newman, Alessandro Sette. BMC Bioinformatics 2006
286
14

Design of a multi-epitope vaccine against SARS-CoV-2 using immunoinformatics approach.
Samira Sanami, Milad Zandi, Behzad Pourhossein, Gholam-Reza Mobini, Mohsen Safaei, Atena Abed, Pooria Mohammadi Arvejeh, Fatemeh Amini Chermahini, Morteza Alizadeh. Int J Biol Macromol 2020
21
28

Design of a Novel Multi Epitope-Based Vaccine for Pandemic Coronavirus Disease (COVID-19) by Vaccinomics and Probable Prevention Strategy against Avenging Zoonotics.
Sajjad Ahmad, Afifa Navid, Rabia Farid, Ghulam Abbas, Faisal Ahmad, Naila Zaman, Nousheen Parvaiz, Syed Sikander Azam. Eur J Pharm Sci 2020
18
33

Vaccine Design from the Ensemble of Surface Glycoprotein Epitopes of SARS-CoV-2: An Immunoinformatics Approach.
Noor Rahman, Fawad Ali, Zarrin Basharat, Muhammad Shehroz, Muhammad Kazim Khan, Philippe Jeandet, Eugenie Nepovimova, Kamil Kuca, Haroon Khan. Vaccines (Basel) 2020
26
23

Development of remdesivir repositioning as a nucleotide analog against COVID-19 RNA dependent RNA polymerase.
Mohammad Mahdi Nejadi Babadaei, Anwarul Hasan, Yasaman Vahdani, Samir Haj Bloukh, Majid Sharifi, Ehsan Kachooei, Setareh Haghighat, Mojtaba Falahati. J Biomol Struct Dyn 2021
26
19

Marine natural compounds as potents inhibitors against the main protease of SARS-CoV-2-a molecular dynamic study.
Muhammad Tahir Khan, Arif Ali, Qiankun Wang, Muhammad Irfan, Abbas Khan, Muhammad Tariq Zeb, Yu-Juan Zhang, Sathishkumar Chinnasamy, Dong-Qing Wei. J Biomol Struct Dyn 2021
63
11

FDA-approved thiol-reacting drugs that potentially bind into the SARS-CoV-2 main protease, essential for viral replication.
Naún Lobo-Galo, Manuel Terrazas-López, Alejandro Martínez-Martínez, Ángel Gabriel Díaz-Sánchez. J Biomol Struct Dyn 2021
51
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.