A citation-based method for searching scientific literature

Yanhong Huang, Xiao Chang, Yu Zhang, Luonan Chen, Xiaoping Liu. Brief Bioinform 2021
Times Cited: 2







List of co-cited articles
3 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Diagnosing phenotypes of single-sample individuals by edge biomarkers.
Wanwei Zhang, Tao Zeng, Xiaoping Liu, Luonan Chen. J Mol Cell Biol 2015
43
100

Personalized characterization of diseases using sample-specific networks.
Xiaoping Liu, Yuetong Wang, Hongbin Ji, Kazuyuki Aihara, Luonan Chen. Nucleic Acids Res 2016
100
100

Estimating Sample-Specific Regulatory Networks.
Marieke Lydia Kuijjer, Matthew George Tung, GuoCheng Yuan, John Quackenbush, Kimberly Glass. iScience 2019
32
100

Interactome networks and human disease.
Marc Vidal, Michael E Cusick, Albert-László Barabási. Cell 2011
920
50

Large-scale metabolomic profiling identifies novel biomarkers for incident coronary heart disease.
Andrea Ganna, Samira Salihovic, Johan Sundström, Corey D Broeckling, Asa K Hedman, Patrik K E Magnusson, Nancy L Pedersen, Anders Larsson, Agneta Siegbahn, Mihkel Zilmer,[...]. PLoS Genet 2014
148
50

The path to personalized medicine.
Margaret A Hamburg, Francis S Collins. N Engl J Med 2010
962
50

Bile acid is a significant host factor shaping the gut microbiome of diet-induced obese mice.
Xiaojiao Zheng, Fengjie Huang, Aihua Zhao, Sha Lei, Yunjing Zhang, Guoxiang Xie, Tianlu Chen, Chun Qu, Cynthia Rajani, Bing Dong,[...]. BMC Biol 2017
100
50

Distinct signatures of dental plaque metabolic byproducts dictated by periodontal inflammatory status.
Akito Sakanaka, Masae Kuboniwa, Ei Hashino, Takeshi Bamba, Eiichiro Fukusaki, Atsuo Amano. Sci Rep 2017
35
50

Individual human phenotypes in metabolic space and time.
Patrizia Bernini, Ivano Bertini, Claudio Luchinat, Stefano Nepi, Edoardo Saccenti, Hartmut Schäfer, Birk Schütz, Manfred Spraul, Leonardo Tenori. J Proteome Res 2009
85
50


Metabolite patterns predicting sex and age in participants of the Karlsruhe Metabolomics and Nutrition (KarMeN) study.
Manuela J Rist, Alexander Roth, Lara Frommherz, Christoph H Weinert, Ralf Krüger, Benedikt Merz, Diana Bunzel, Carina Mack, Björn Egert, Achim Bub,[...]. PLoS One 2017
84
50

Gut microbiome structure and metabolic activity in inflammatory bowel disease.
Eric A Franzosa, Alexandra Sirota-Madi, Julian Avila-Pacheco, Nadine Fornelos, Henry J Haiser, Stefan Reinker, Tommi Vatanen, A Brantley Hall, Himel Mallick, Lauren J McIver,[...]. Nat Microbiol 2019
341
50

Necrotizing Soft-Tissue Infections.
Dennis L Stevens, Amy E Bryant. N Engl J Med 2017
199
50

(1)H-NMR urinary metabolomic profiling for diagnosis of gastric cancer.
Angela W Chan, Pascal Mercier, Daniel Schiller, Robert Bailey, Sarah Robbins, Dean T Eurich, Michael B Sawyer, David Broadhurst. Br J Cancer 2016
53
50

Predictors of mortality and limb loss in necrotizing soft tissue infections.
Daniel A Anaya, Kerry McMahon, Avery B Nathens, Stephen R Sullivan, Hugh Foy, Eileen Bulger. Arch Surg 2005
227
50

BioModels-15 years of sharing computational models in life science.
Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen, Krishna Tiwari, Matthew G Roberts, Ashley Xavier, Manh T Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan,[...]. Nucleic Acids Res 2020
50
50


lionessR: single sample network inference in R.
Marieke L Kuijjer, Ping-Han Hsieh, John Quackenbush, Kimberly Glass. BMC Cancer 2019
7
50

Single-Sample Node Entropy for Molecular Transition in Pre-deterioration Stage of Cancer.
Chongyin Han, Jiayuan Zhong, Jiaqi Hu, Huisheng Liu, Rui Liu, Fei Ling. Front Bioeng Biotechnol 2020
2
50


Bridging the gap between clinicians and systems biologists: from network biology to translational biomedical research.
Natini Jinawath, Sacarin Bunbanjerdsuk, Maneerat Chayanupatkul, Nuttapong Ngamphaiboon, Nithi Asavapanumas, Jisnuson Svasti, Varodom Charoensawan. J Transl Med 2016
11
50

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis.
Jasmine Chong, Othman Soufan, Carin Li, Iurie Caraus, Shuzhao Li, Guillaume Bourque, David S Wishart, Jianguo Xia. Nucleic Acids Res 2018
50

Causal network perturbations for instance-specific analysis of single cell and disease samples.
Kristina L Buschur, Maria Chikina, Panayiotis V Benos. Bioinformatics 2020
4
50

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions.
Camila Caldana, Thomas Degenkolbe, Alvaro Cuadros-Inostroza, Sebastian Klie, Ronan Sulpice, Andrea Leisse, Dirk Steinhauser, Alisdair R Fernie, Lothar Willmitzer, Matthew A Hannah. Plant J 2011
144
50

Trisomy 21 activates the kynurenine pathway via increased dosage of interferon receptors.
Rani K Powers, Rachel Culp-Hill, Michael P Ludwig, Keith P Smith, Katherine A Waugh, Ross Minter, Kathryn D Tuttle, Hannah C Lewis, Angela L Rachubinski, Ross E Granrath,[...]. Nat Commun 2019
35
50

Monounsaturated fatty acids in serum triacylglycerols are associated with response to neoadjuvant chemotherapy in breast cancer patients.
Mika Hilvo, Stephan Gade, Tuulia Hyötyläinen, Valentina Nekljudova, Tuulikki Seppänen-Laakso, Marko Sysi-Aho, Michael Untch, Jens Huober, Gunter von Minckwitz, Carsten Denkert,[...]. Int J Cancer 2014
24
50

From correlation to causation: analysis of metabolomics data using systems biology approaches.
Antonio Rosato, Leonardo Tenori, Marta Cascante, Pedro Ramon De Atauri Carulla, Vitor A P Martins Dos Santos, Edoardo Saccenti. Metabolomics 2018
77
50




Network biology in medicine and beyond.
Bai Zhang, Ye Tian, Zhen Zhang. Circ Cardiovasc Genet 2014
15
50

Integrated Univariate, Multivariate, and Correlation-Based Network Analyses Reveal Metabolite-Specific Effects on Bacterial Growth and Biofilm Formation in Necrotizing Soft Tissue Infections.
Muhammad Afzal, Edoardo Saccenti, Martin Bruun Madsen, Marco Bo Hansen, Ole Hyldegaard, Steinar Skrede, Vitor A P Martins Dos Santos, Anna Norrby-Teglund, Mattias Svensson. J Proteome Res 2020
10
50

A census of human cancer genes.
P Andrew Futreal, Lachlan Coin, Mhairi Marshall, Thomas Down, Timothy Hubbard, Richard Wooster, Nazneen Rahman, Michael R Stratton. Nat Rev Cancer 2004
50

Serum metabolomic profiles associated with postmenopausal hormone use.
Victoria L Stevens, Ying Wang, Brian D Carter, Mia M Gaudet, Susan M Gapstur. Metabolomics 2018
10
50

FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.
Steffen Klamt, Jörg Stelling, Martin Ginkel, Ernst Dieter Gilles. Bioinformatics 2003
113
50

Investigation of metabolomic blood biomarkers for detection of adenocarcinoma lung cancer.
Johannes F Fahrmann, Kyoungmi Kim, Brian C DeFelice, Sandra L Taylor, David R Gandara, Ken Y Yoneda, David T Cooke, Oliver Fiehn, Karen Kelly, Suzanne Miyamoto. Cancer Epidemiol Biomarkers Prev 2015
36
50

MissForest--non-parametric missing value imputation for mixed-type data.
Daniel J Stekhoven, Peter Bühlmann. Bioinformatics 2012
884
50

Identifying disease genes and module biomarkers by differential interactions.
Xiaoping Liu, Zhi-Ping Liu, Xing-Ming Zhao, Luonan Chen. J Am Med Inform Assoc 2012
72
50


Network biology: understanding the cell's functional organization.
Albert-László Barabási, Zoltán N Oltvai. Nat Rev Genet 2004
50


Cell-specific network constructed by single-cell RNA sequencing data.
Hao Dai, Lin Li, Tao Zeng, Luonan Chen. Nucleic Acids Res 2019
31
50

Controlling Directed Protein Interaction Networks in Cancer.
Krishna Kanhaiya, Eugen Czeizler, Cristian Gratie, Ion Petre. Sci Rep 2017
22
50

A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification.
Wei-Feng Guo, Shao-Wu Zhang, Qian-Qian Shi, Cheng-Ming Zhang, Tao Zeng, Luonan Chen. BMC Genomics 2018
9
50

A directed protein interaction network for investigating intracellular signal transduction.
Arunachalam Vinayagam, Ulrich Stelzl, Raphaele Foulle, Stephanie Plassmann, Martina Zenkner, Jan Timm, Heike E Assmus, Miguel A Andrade-Navarro, Erich E Wanker. Sci Signal 2011
210
50

Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight.
Mark T W Ebbert, Tanner D Jensen, Karen Jansen-West, Jonathon P Sens, Joseph S Reddy, Perry G Ridge, John S K Kauwe, Veronique Belzil, Luc Pregent, Minerva M Carrasquillo,[...]. Genome Biol 2019
51
50

Pinning control of complex networks via edge snapping.
P DeLellis, M di Bernardo, M Porfiri. Chaos 2011
15
50


Network deconvolution as a general method to distinguish direct dependencies in networks.
Soheil Feizi, Daniel Marbach, Muriel Médard, Manolis Kellis. Nat Biotechnol 2013
114
50

The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine.
Kivilcim Ozturk, Michelle Dow, Daniel E Carlin, Rafael Bejar, Hannah Carter. J Mol Biol 2018
32
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.