A citation-based method for searching scientific literature

Brendan T Freitas, Ian A Durie, Jackelyn Murray, Jaron E Longo, Holden C Miller, David Crich, Robert Jeff Hogan, Ralph A Tripp, Scott D Pegan. ACS Infect Dis 2020
Times Cited: 136







List of co-cited articles
1224 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity.
Donghyuk Shin, Rukmini Mukherjee, Diana Grewe, Denisa Bojkova, Kheewoong Baek, Anshu Bhattacharya, Laura Schulz, Marek Widera, Ahmad Reza Mehdipour, Georg Tascher,[...]. Nature 2020
408
59

Mechanism and inhibition of the papain-like protease, PLpro, of SARS-CoV-2.
Theresa Klemm, Gregor Ebert, Dale J Calleja, Cody C Allison, Lachlan W Richardson, Jonathan P Bernardini, Bernadine Gc Lu, Nathan W Kuchel, Christoph Grohmann, Yuri Shibata,[...]. EMBO J 2020
168
51

A noncovalent class of papain-like protease/deubiquitinase inhibitors blocks SARS virus replication.
Kiira Ratia, Scott Pegan, Jun Takayama, Katrina Sleeman, Melissa Coughlin, Surendranath Baliji, Rima Chaudhuri, Wentao Fu, Bellur S Prabhakar, Michael E Johnson,[...]. Proc Natl Acad Sci U S A 2008
278
44

Activity profiling and crystal structures of inhibitor-bound SARS-CoV-2 papain-like protease: A framework for anti-COVID-19 drug design.
Wioletta Rut, Zongyang Lv, Mikolaj Zmudzinski, Stephanie Patchett, Digant Nayak, Scott J Snipas, Farid El Oualid, Tony T Huang, Miklos Bekes, Marcin Drag,[...]. Sci Adv 2020
188
42

Structure of Mpro from SARS-CoV-2 and discovery of its inhibitors.
Zhenming Jin, Xiaoyu Du, Yechun Xu, Yongqiang Deng, Meiqin Liu, Yao Zhao, Bing Zhang, Xiaofeng Li, Leike Zhang, Chao Peng,[...]. Nature 2020
37

The SARS-coronavirus papain-like protease: structure, function and inhibition by designed antiviral compounds.
Yahira M Báez-Santos, Sarah E St John, Andrew D Mesecar. Antiviral Res 2015
444
36

Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved α-ketoamide inhibitors.
Linlin Zhang, Daizong Lin, Xinyuanyuan Sun, Ute Curth, Christian Drosten, Lucie Sauerhering, Stephan Becker, Katharina Rox, Rolf Hilgenfeld. Science 2020
36

Severe acute respiratory syndrome coronavirus papain-like protease: structure of a viral deubiquitinating enzyme.
Kiira Ratia, Kumar Singh Saikatendu, Bernard D Santarsiero, Naina Barretto, Susan C Baker, Raymond C Stevens, Andrew D Mesecar. Proc Natl Acad Sci U S A 2006
274
29

Crystal structure of SARS-CoV-2 papain-like protease.
Xiaopan Gao, Bo Qin, Pu Chen, Kaixiang Zhu, Pengjiao Hou, Justyna Aleksandra Wojdyla, Meitian Wang, Sheng Cui. Acta Pharm Sin B 2021
114
28

The papain-like protease of severe acute respiratory syndrome coronavirus has deubiquitinating activity.
Naina Barretto, Dalia Jukneliene, Kiira Ratia, Zhongbin Chen, Andrew D Mesecar, Susan C Baker. J Virol 2005
346
27

Structure-based design of antiviral drug candidates targeting the SARS-CoV-2 main protease.
Wenhao Dai, Bing Zhang, Xia-Ming Jiang, Haixia Su, Jian Li, Yao Zhao, Xiong Xie, Zhenming Jin, Jingjing Peng, Fengjiang Liu,[...]. Science 2020
675
27

SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.
Markus Hoffmann, Hannah Kleine-Weber, Simon Schroeder, Nadine Krüger, Tanja Herrler, Sandra Erichsen, Tobias S Schiergens, Georg Herrler, Nai-Huei Wu, Andreas Nitsche,[...]. Cell 2020
27

The complex structure of GRL0617 and SARS-CoV-2 PLpro reveals a hot spot for antiviral drug discovery.
Ziyang Fu, Bin Huang, Jinle Tang, Shuyan Liu, Ming Liu, Yuxin Ye, Zhihong Liu, Yuxian Xiong, Wenning Zhu, Dan Cao,[...]. Nat Commun 2021
77
32

A pneumonia outbreak associated with a new coronavirus of probable bat origin.
Peng Zhou, Xing-Lou Yang, Xian-Guang Wang, Ben Hu, Lei Zhang, Wei Zhang, Hao-Rui Si, Yan Zhu, Bei Li, Chao-Lin Huang,[...]. Nature 2020
24

X-ray structural and biological evaluation of a series of potent and highly selective inhibitors of human coronavirus papain-like proteases.
Yahira M Báez-Santos, Scott J Barraza, Michael W Wilson, Michael P Agius, Anna M Mielech, Nicole M Davis, Susan C Baker, Scott D Larsen, Andrew D Mesecar. J Med Chem 2014
114
24

Boceprevir, GC-376, and calpain inhibitors II, XII inhibit SARS-CoV-2 viral replication by targeting the viral main protease.
Chunlong Ma, Michael Dominic Sacco, Brett Hurst, Julia Alma Townsend, Yanmei Hu, Tommy Szeto, Xiujun Zhang, Bart Tarbet, Michael Thomas Marty, Yu Chen,[...]. Cell Res 2020
370
24

A new coronavirus associated with human respiratory disease in China.
Fan Wu, Su Zhao, Bin Yu, Yan-Mei Chen, Wen Wang, Zhi-Gang Song, Yi Hu, Zhao-Wu Tao, Jun-Hua Tian, Yuan-Yuan Pei,[...]. Nature 2020
23

Structure of papain-like protease from SARS-CoV-2 and its complexes with non-covalent inhibitors.
Jerzy Osipiuk, Saara-Anne Azizi, Steve Dvorkin, Michael Endres, Robert Jedrzejczak, Krysten A Jones, Soowon Kang, Rahul S Kathayat, Youngchang Kim, Vladislav G Lisnyak,[...]. Nat Commun 2021
130
23

A Novel Coronavirus from Patients with Pneumonia in China, 2019.
Na Zhu, Dingyu Zhang, Wenling Wang, Xingwang Li, Bo Yang, Jingdong Song, Xiang Zhao, Baoying Huang, Weifeng Shi, Roujian Lu,[...]. N Engl J Med 2020
19

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.
David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney,[...]. Nature 2020
19

Severe acute respiratory syndrome coronavirus papain-like novel protease inhibitors: design, synthesis, protein-ligand X-ray structure and biological evaluation.
Arun K Ghosh, Jun Takayama, Kalapala Venkateswara Rao, Kiira Ratia, Rima Chaudhuri, Debbie C Mulhearn, Hyun Lee, Daniel B Nichols, Surendranath Baliji, Susan C Baker,[...]. J Med Chem 2010
92
19

Identification of severe acute respiratory syndrome coronavirus replicase products and characterization of papain-like protease activity.
Brian H Harcourt, Dalia Jukneliene, Amornrat Kanjanahaluethai, John Bechill, Kari M Severson, Catherine M Smith, Paul A Rota, Susan C Baker. J Virol 2004
300
17

Structural Basis for the Ubiquitin-Linkage Specificity and deISGylating activity of SARS-CoV papain-like protease.
Kiira Ratia, Andrew Kilianski, Yahira M Baez-Santos, Susan C Baker, Andrew Mesecar. PLoS Pathog 2014
130
17

Nsp3 of coronaviruses: Structures and functions of a large multi-domain protein.
Jian Lei, Yuri Kusov, Rolf Hilgenfeld. Antiviral Res 2018
294
17

Remdesivir for the Treatment of Covid-19 - Final Report.
John H Beigel, Kay M Tomashek, Lori E Dodd, Aneesh K Mehta, Barry S Zingman, Andre C Kalil, Elizabeth Hohmann, Helen Y Chu, Annie Luetkemeyer, Susan Kline,[...]. N Engl J Med 2020
17

Drug Development and Medicinal Chemistry Efforts toward SARS-Coronavirus and Covid-19 Therapeutics.
Arun K Ghosh, Margherita Brindisi, Dana Shahabi, Mackenzie E Chapman, Andrew D Mesecar. ChemMedChem 2020
151
17

Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding.
Roujian Lu, Xiang Zhao, Juan Li, Peihua Niu, Bo Yang, Honglong Wu, Wenling Wang, Hao Song, Baoying Huang, Na Zhu,[...]. Lancet 2020
16

Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.
Chaolin Huang, Yeming Wang, Xingwang Li, Lili Ren, Jianping Zhao, Yi Hu, Li Zhang, Guohui Fan, Jiuyang Xu, Xiaoying Gu,[...]. Lancet 2020
16


The papain-like protease from the severe acute respiratory syndrome coronavirus is a deubiquitinating enzyme.
Holger A Lindner, Nasser Fotouhi-Ardakani, Viktoria Lytvyn, Paule Lachance, Traian Sulea, Robert Ménard. J Virol 2005
258
16

Disulfiram can inhibit MERS and SARS coronavirus papain-like proteases via different modes.
Min-Han Lin, David C Moses, Chih-Hua Hsieh, Shu-Chun Cheng, Yau-Hung Chen, Chiao-Yin Sun, Chi-Yuan Chou. Antiviral Res 2018
142
15

Structure of the RNA-dependent RNA polymerase from COVID-19 virus.
Yan Gao, Liming Yan, Yucen Huang, Fengjiang Liu, Yao Zhao, Lin Cao, Tao Wang, Qianqian Sun, Zhenhua Ming, Lianqi Zhang,[...]. Science 2020
736
14

Remdesivir and chloroquine effectively inhibit the recently emerged novel coronavirus (2019-nCoV) in vitro.
Manli Wang, Ruiyuan Cao, Leike Zhang, Xinglou Yang, Jia Liu, Mingyue Xu, Zhengli Shi, Zhihong Hu, Wu Zhong, Gengfu Xiao. Cell Res 2020
14

Structure-based design, synthesis, and biological evaluation of a series of novel and reversible inhibitors for the severe acute respiratory syndrome-coronavirus papain-like protease.
Arun K Ghosh, Jun Takayama, Yoann Aubin, Kiira Ratia, Rima Chaudhuri, Yahira Baez, Katrina Sleeman, Melissa Coughlin, Daniel B Nichols, Debbie C Mulhearn,[...]. J Med Chem 2009
74
18

Coronaviruses: an overview of their replication and pathogenesis.
Anthony R Fehr, Stanley Perlman. Methods Mol Biol 2015
13

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.
Daniel Wrapp, Nianshuang Wang, Kizzmekia S Corbett, Jory A Goldsmith, Ching-Lin Hsieh, Olubukola Abiona, Barney S Graham, Jason S McLellan. Science 2020
13

A Trial of Lopinavir-Ritonavir in Adults Hospitalized with Severe Covid-19.
Bin Cao, Yeming Wang, Danning Wen, Wen Liu, Jingli Wang, Guohui Fan, Lianguo Ruan, Bin Song, Yanping Cai, Ming Wei,[...]. N Engl J Med 2020
13


Analysis of therapeutic targets for SARS-CoV-2 and discovery of potential drugs by computational methods.
Canrong Wu, Yang Liu, Yueying Yang, Peng Zhang, Wu Zhong, Yali Wang, Qiqi Wang, Yang Xu, Mingxue Li, Xingzhou Li,[...]. Acta Pharm Sin B 2020
12

Recognition of Lys48-Linked Di-ubiquitin and Deubiquitinating Activities of the SARS Coronavirus Papain-like Protease.
Miklós Békés, Gerbrand J van der Heden van Noort, Reggy Ekkebus, Huib Ovaa, Tony T Huang, Christopher D Lima. Mol Cell 2016
86
13

Coronaviruses - drug discovery and therapeutic options.
Alimuddin Zumla, Jasper F W Chan, Esam I Azhar, David S C Hui, Kwok-Yung Yuen. Nat Rev Drug Discov 2016
917
12


Thiopurine analogues inhibit papain-like protease of severe acute respiratory syndrome coronavirus.
Chi-Yuan Chou, Chia-Hui Chien, Yu-San Han, Mojca Trstenjak Prebanda, Hsing-Pang Hsieh, Boris Turk, Gu-Gang Chang, Xin Chen. Biochem Pharmacol 2008
69
15

Mechanisms and enzymes involved in SARS coronavirus genome expression.
Volker Thiel, Konstantin A Ivanov, Ákos Putics, Tobias Hertzig, Barbara Schelle, Sonja Bayer, Benedikt Weißbrich, Eric J Snijder, Holger Rabenau, Hans Wilhelm Doerr,[...]. J Gen Virol 2003
586
11

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor.
Jun Lan, Jiwan Ge, Jinfang Yu, Sisi Shan, Huan Zhou, Shilong Fan, Qi Zhang, Xuanling Shi, Qisheng Wang, Linqi Zhang,[...]. Nature 2020
11

Origin and evolution of pathogenic coronaviruses.
Jie Cui, Fang Li, Zheng-Li Shi. Nat Rev Microbiol 2019
11

α-Ketoamides as Broad-Spectrum Inhibitors of Coronavirus and Enterovirus Replication: Structure-Based Design, Synthesis, and Activity Assessment.
Linlin Zhang, Daizong Lin, Yuri Kusov, Yong Nian, Qingjun Ma, Jiang Wang, Albrecht von Brunn, Pieter Leyssen, Kristina Lanko, Johan Neyts,[...]. J Med Chem 2020
262
11

Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.
Alexandra C Walls, Young-Jun Park, M Alejandra Tortorici, Abigail Wall, Andrew T McGuire, David Veesler. Cell 2020
11

Tanshinones as selective and slow-binding inhibitors for SARS-CoV cysteine proteases.
Ji-Young Park, Jang Hoon Kim, Young Min Kim, Hyung Jae Jeong, Dae Wook Kim, Ki Hun Park, Hyung-Jun Kwon, Su-Jin Park, Woo Song Lee, Young Bae Ryu. Bioorg Med Chem 2012
123
11

Coronavirus biology and replication: implications for SARS-CoV-2.
Philip V'kovski, Annika Kratzel, Silvio Steiner, Hanspeter Stalder, Volker Thiel. Nat Rev Microbiol 2021
893
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.