A citation-based method for searching scientific literature

Beatrice Salvatori, Silvia Biscarini, Mariangela Morlando. Front Cell Dev Biol 2020
Times Cited: 12







List of co-cited articles
146 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
41

Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation.
Farzaneh Modarresi, Mohammad Ali Faghihi, Miguel A Lopez-Toledano, Roya Pedram Fatemi, Marco Magistri, Shaun P Brothers, Marcel P van der Brug, Claes Wahlestedt. Nat Biotechnol 2012
416
41

An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment.
Nianwei Lin, Kung-Yen Chang, Zhonghan Li, Keith Gates, Zacharia A Rana, Jason Dang, Danhua Zhang, Tianxu Han, Chao-Shun Yang, Thomas J Cunningham,[...]. Mol Cell 2014
267
41

The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells.
Alexander D Ramos, Rebecca E Andersen, Siyuan John Liu, Tomasz Jan Nowakowski, Sung Jun Hong, Caitlyn Gertz, Ryan D Salinas, Hosniya Zarabi, Arnold R Kriegstein, Daniel A Lim. Cell Stem Cell 2015
205
33

Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry.
Allison M Bond, Michael J W Vangompel, Evgeny A Sametsky, Mary F Clark, Julie C Savage, John F Disterhoft, Jhumku D Kohtz. Nat Neurosci 2009
273
33

The long non-coding RNA nuclear-enriched abundant transcript 1_2 induces paraspeckle formation in the motor neuron during the early phase of amyotrophic lateral sclerosis.
Yoshinori Nishimoto, Shinichi Nakagawa, Tetsuro Hirose, Hirotaka James Okano, Masaki Takao, Shinsuke Shibata, Satoshi Suyama, Ken-Ichiro Kuwako, Takao Imai, Shigeo Murayama,[...]. Mol Brain 2013
141
33

The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis.
Shi-Yan Ng, Gireesh K Bogu, Boon Seng Soh, Lawrence W Stanton. Mol Cell 2013
275
33

Mechanisms of Long Non-coding RNAs in Mammalian Nervous System Development, Plasticity, Disease, and Evolution.
James A Briggs, Ernst J Wolvetang, John S Mattick, John L Rinn, Guy Barry. Neuron 2015
233
33


A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.
Delphine Bernard, Kannanganattu V Prasanth, Vidisha Tripathi, Sabrina Colasse, Tetsuya Nakamura, Zhenyu Xuan, Michael Q Zhang, Frédéric Sedel, Laurent Jourdren, Fanny Coulpier,[...]. EMBO J 2010
493
33


Cellular functions of long noncoding RNAs.
Run-Wen Yao, Yang Wang, Ling-Ling Chen. Nat Cell Biol 2019
463
33

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
33

Human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease.
Rory Johnson, Nadine Richter, Ralf Jauch, Philip M Gaughwin, Chiara Zuccato, Elena Cattaneo, Lawrence W Stanton. Physiol Genomics 2010
80
33

Single-cell analysis of long non-coding RNAs in the developing human neocortex.
Siyuan John Liu, Tomasz J Nowakowski, Alex A Pollen, Jan H Lui, Max A Horlbeck, Frank J Attenello, Daniel He, Jonathan S Weissman, Arnold R Kriegstein, Aaron A Diaz,[...]. Genome Biol 2016
195
33

Multiple knockout mouse models reveal lincRNAs are required for life and brain development.
Martin Sauvageau, Loyal A Goff, Simona Lodato, Boyan Bonev, Abigail F Groff, Chiara Gerhardinger, Diana B Sanchez-Gomez, Ezgi Hacisuleyman, Eric Li, Matthew Spence,[...]. Elife 2013
465
33

Gene regulation by long non-coding RNAs and its biological functions.
Luisa Statello, Chun-Jie Guo, Ling-Ling Chen, Maite Huarte. Nat Rev Mol Cell Biol 2021
288
33

Altered Levels of Long NcRNAs Meg3 and Neat1 in Cell And Animal Models Of Huntington's Disease.
Kaushik Chanda, Srijit Das, Joyeeta Chakraborty, Sudha Bucha, Arindam Maitra, Raghunath Chatterjee, Debashis Mukhopadhyay, Nitai P Bhattacharyya. RNA Biol 2018
28
25

NEAT1 and paraspeckles in neurodegenerative diseases: A missing lnc found?
Haiyan An, Non G Williams, Tatyana A Shelkovnikova. Noncoding RNA Res 2018
39
25

The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43.
S Keihani, V Kluever, S Mandad, V Bansal, R Rahman, E Fritsch, L Caldi Gomes, A Gärtner, S Kügler, H Urlaub,[...]. Sci Adv 2019
16
25

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
25

Linking Long Noncoding RNA Localization and Function.
Ling-Ling Chen. Trends Biochem Sci 2016
462
25

Specific expression of long noncoding RNAs in the mouse brain.
Tim R Mercer, Marcel E Dinger, Susan M Sunkin, Mark F Mehler, John S Mattick. Proc Natl Acad Sci U S A 2008
843
25

Circular RNAs are abundant, conserved, and associated with ALU repeats.
William R Jeck, Jessica A Sorrentino, Kai Wang, Michael K Slevin, Christin E Burd, Jinze Liu, William F Marzluff, Norman E Sharpless. RNA 2013
25



A lncRNA survey finds increases in neuroprotective LINC-PINT in Parkinson's disease substantia nigra.
Alon Simchovitz, Mor Hanan, Nadav Yayon, Songhua Lee, Estelle R Bennett, David S Greenberg, Sebastian Kadener, Hermona Soreq. Aging Cell 2020
18
25

MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA-DNA triplex structures.
Tanmoy Mondal, Santhilal Subhash, Roshan Vaid, Stefan Enroth, Sireesha Uday, Björn Reinius, Sanhita Mitra, Arif Mohammed, Alva Rani James, Emily Hoberg,[...]. Nat Commun 2015
362
25

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
25

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Ahmad M Khalil, Mitchell Guttman, Maite Huarte, Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, Bradley E Bernstein, Alexander van Oudenaarden,[...]. Proc Natl Acad Sci U S A 2009
25

A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression.
Daniel W Chung, Dobrila D Rudnicki, Lan Yu, Russell L Margolis. Hum Mol Genet 2011
130
25

Noncoding RNAs in neurodegeneration.
Evgenia Salta, Bart De Strooper. Nat Rev Neurosci 2017
68
25

Altered Expression of the Long Noncoding RNA NEAT1 in Huntington's Disease.
Jun-Sang Sunwoo, Soon-Tae Lee, Wooseok Im, Mijung Lee, Jung-Ick Byun, Keun-Hwa Jung, Kyung-Il Park, Ki-Young Jung, Sang Kun Lee, Kon Chu,[...]. Mol Neurobiol 2017
88
25

Long noncoding RNAs: functional surprises from the RNA world.
Jeremy E Wilusz, Hongjae Sunwoo, David L Spector. Genes Dev 2009
25

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.
Claudia Carrieri, Laura Cimatti, Marta Biagioli, Anne Beugnet, Silvia Zucchelli, Stefania Fedele, Elisa Pesce, Isidre Ferrer, Licio Collavin, Claudio Santoro,[...]. Nature 2012
604
25

The transcriptional landscape of the mammalian genome.
P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells,[...]. Science 2005
25

The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.
Masamitsu Sone, Tetsutaro Hayashi, Hiroshi Tarui, Kiyokazu Agata, Masatoshi Takeichi, Shinichi Nakagawa. J Cell Sci 2007
232
25

Expression analysis of the long non-coding RNA antisense to Uchl1 (AS Uchl1) during dopaminergic cells' differentiation in vitro and in neurochemical models of Parkinson's disease.
Claudia Carrieri, Alistair R R Forrest, Claudio Santoro, Francesca Persichetti, Piero Carninci, Silvia Zucchelli, Stefano Gustincich. Front Cell Neurosci 2015
96
25

On the classification of long non-coding RNAs.
Lina Ma, Vladimir B Bajic, Zhang Zhang. RNA Biol 2013
598
25

An atlas of human long non-coding RNAs with accurate 5' ends.
Chung-Chau Hon, Jordan A Ramilowski, Jayson Harshbarger, Nicolas Bertin, Owen J L Rackham, Julian Gough, Elena Denisenko, Sebastian Schmeier, Thomas M Poulsen, Jessica Severin,[...]. Nature 2017
477
25

Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.
Mohammad Ali Faghihi, Farzaneh Modarresi, Ahmad M Khalil, Douglas E Wood, Barbara G Sahagan, Todd E Morgan, Caleb E Finch, Georges St Laurent, Paul J Kenny, Claes Wahlestedt. Nat Med 2008
955
25

The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function.
Camilla Scheele, Natasa Petrovic, Mohammad A Faghihi, Timo Lassmann, Katarina Fredriksson, Olav Rooyackers, Claes Wahlestedt, Liam Good, James A Timmons. BMC Genomics 2007
95
25


Towards a therapy for Angelman syndrome by targeting a long non-coding RNA.
Linyan Meng, Amanda J Ward, Seung Chun, C Frank Bennett, Arthur L Beaudet, Frank Rigo. Nature 2015
273
25

17A, a novel non-coding RNA, regulates GABA B alternative splicing and signaling in response to inflammatory stimuli and in Alzheimer disease.
Sara Massone, Irene Vassallo, Gloria Fiorino, Manuele Castelnuovo, Federica Barbieri, Roberta Borghi, Massimo Tabaton, Mauro Robello, Elena Gatta, Claudio Russo,[...]. Neurobiol Dis 2011
153
25

Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation.
Tim R Mercer, Irfan A Qureshi, Solen Gokhan, Marcel E Dinger, Guangyu Li, John S Mattick, Mark F Mehler. BMC Neurosci 2010
294
25

The long non-coding RNA Dali is an epigenetic regulator of neural differentiation.
Vladislava Chalei, Stephen N Sansom, Lesheng Kong, Sheena Lee, Juan F Montiel, Keith W Vance, Chris P Ponting. Elife 2014
99
25

Screening for Small-Molecule Modulators of Long Noncoding RNA-Protein Interactions Using AlphaScreen.
Roya Pedram Fatemi, Sultan Salah-Uddin, Farzaneh Modarresi, Nathalie Khoury, Claes Wahlestedt, Mohammad Ali Faghihi. J Biomol Screen 2015
53
25

lincRNAs act in the circuitry controlling pluripotency and differentiation.
Mitchell Guttman, Julie Donaghey, Bryce W Carey, Manuel Garber, Jennifer K Grenier, Glen Munson, Geneva Young, Anne Bergstrom Lucas, Robert Ach, Laurakay Bruhn,[...]. Nature 2011
25

The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing.
G Barry, J A Briggs, D P Vanichkina, E M Poth, N J Beveridge, V S Ratnu, S P Nayler, K Nones, J Hu, T W Bredy,[...]. Mol Psychiatry 2014
267
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.