A citation-based method for searching scientific literature

Jessica A Brown. Wiley Interdiscip Rev RNA 2020
Times Cited: 7







List of co-cited articles
52 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Structural insights into the stabilization of MALAT1 noncoding RNA by a bipartite triple helix.
Jessica A Brown, David Bulkley, Jimin Wang, Max L Valenstein, Therese A Yario, Thomas A Steitz, Joan A Steitz. Nat Struct Mol Biol 2014
122
71

A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails.
Jeremy E Wilusz, Courtney K JnBaptiste, Laura Y Lu, Claus-D Kuhn, Leemor Joshua-Tor, Phillip A Sharp. Genes Dev 2012
246
57

Conservation of a triple-helix-forming RNA stability element in noncoding and genomic RNAs of diverse viruses.
Kazimierz T Tycowski, Mei-Di Shu, Sumit Borah, Mary Shi, Joan A Steitz. Cell Rep 2012
65
42

Myriad Triple-Helix-Forming Structures in the Transposable Element RNAs of Plants and Fungi.
Kazimierz T Tycowski, Mei-Di Shu, Joan A Steitz. Cell Rep 2016
16
42

Formation of triple-helical structures by the 3'-end sequences of MALAT1 and MENβ noncoding RNAs.
Jessica A Brown, Max L Valenstein, Therese A Yario, Kazimierz T Tycowski, Joan A Steitz. Proc Natl Acad Sci U S A 2012
160
42

Identification of a rapid mammalian deadenylation-dependent decay pathway and its inhibition by a viral RNA element.
Nicholas K Conrad, Stavroula Mili, Eleanor L Marshall, Mei-Di Shu, Joan A Steitz. Mol Cell 2006
77
42

Mutational analysis of a viral RNA element that counteracts rapid RNA decay by interaction with the polyadenylate tail.
Nicholas K Conrad, Mei-Di Shu, Katherine E Uyhazi, Joan A Steitz. Proc Natl Acad Sci U S A 2007
42
42

Riboswitches and the RNA world.
Ronald R Breaker. Cold Spring Harb Perspect Biol 2012
360
42

Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics.
Joseph A Liberman, Krishna C Suddala, Asaminew Aytenfisu, Dalen Chan, Ivan A Belashov, Mohammad Salim, David H Mathews, Robert C Spitale, Nils G Walter, Joseph E Wedekind. Proc Natl Acad Sci U S A 2015
38
42

Poly(A) tail recognition by a viral RNA element through assembly of a triple helix.
Rachel M Mitton-Fry, Suzanne J DeGregorio, Jimin Wang, Thomas A Steitz, Joan A Steitz. Science 2010
109
42

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif.
P Nissen, J A Ippolito, N Ban, P B Moore, T A Steitz. Proc Natl Acad Sci U S A 2001
487
42


Principles for targeting RNA with drug-like small molecules.
Katherine Deigan Warner, Christine E Hajdin, Kevin M Weeks. Nat Rev Drug Discov 2018
155
42

Overview of the CCP4 suite and current developments.
Martyn D Winn, Charles C Ballard, Kevin D Cowtan, Eleanor J Dodson, Paul Emsley, Phil R Evans, Ronan M Keegan, Eugene B Krissinel, Andrew G W Leslie, Airlie McCoy,[...]. Acta Crystallogr D Biol Crystallogr 2011
42

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
42

Riboswitch diversity and distribution.
Phillip J McCown, Keith A Corbino, Shira Stav, Madeline E Sherlock, Ronald R Breaker. RNA 2017
177
28

Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems.
Mari Yamada, Yuto Watanabe, Jonathan S Gootenberg, Hisato Hirano, F Ann Ran, Takanori Nakane, Ryuichiro Ishitani, Feng Zhang, Hiroshi Nishimasu, Osamu Nureki. Mol Cell 2017
66
28

Functional importance of telomerase pseudoknot revealed by single-molecule analysis.
Mariana Mihalusova, John Y Wu, Xiaowei Zhuang. Proc Natl Acad Sci U S A 2011
29
28


The A-minor motifs in the decoding recognition process.
A Lescoute, E Westhof. Biochimie 2006
28
28

Crystal structure of a self-splicing group I intron with both exons.
Peter L Adams, Mary R Stahley, Anne B Kosek, Jimin Wang, Scott A Strobel. Nature 2004
316
28

Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription.
Ivan A Belashov, David W Crawford, Chapin E Cavender, Peng Dai, Patrick C Beardslee, David H Mathews, Bradley L Pentelute, Brian R McNaughton, Joseph E Wedekind. Nucleic Acids Res 2018
10
28

Crystal structure of a self-spliced group II intron.
Navtej Toor, Kevin S Keating, Sean D Taylor, Anna Marie Pyle. Science 2008
334
28

Selective Small-Molecule Targeting of a Triple Helix Encoded by the Long Noncoding RNA, MALAT1.
Fardokht A Abulwerdi, Wenbo Xu, Abeer A Ageeli, Michael J Yonkunas, Gayatri Arun, Hyeyeon Nam, John S Schneekloth, Theodore Kwaku Dayie, David Spector, Nathan Baird,[...]. ACS Chem Biol 2019
40
28

The emerging role of triple helices in RNA biology.
Nicholas K Conrad. Wiley Interdiscip Rev RNA 2014
43
28

Transcriptome-wide identification of transient RNA G-quadruplexes in human cells.
Sunny Y Yang, Pauline Lejault, Sandy Chevrier, Romain Boidot, A Gordon Robertson, Judy M Y Wong, David Monchaud. Nat Commun 2018
73
28

Riboswitches and Translation Control.
Ronald R Breaker. Cold Spring Harb Perspect Biol 2018
62
28

Discovery of Small Molecule Ligands for MALAT1 by Tuning an RNA-Binding Scaffold.
Anita Donlic, Brittany S Morgan, Jason L Xu, Anqi Liu, Carlos Roble, Amanda E Hargrove. Angew Chem Int Ed Engl 2018
31
28

MALAT1 -- a paradigm for long noncoding RNA function in cancer.
Tony Gutschner, Monika Hämmerle, Sven Diederichs. J Mol Med (Berl) 2013
485
28

Structure of the SAM-II riboswitch bound to S-adenosylmethionine.
Sunny D Gilbert, Robert P Rambo, Daria Van Tyne, Robert T Batey. Nat Struct Mol Biol 2008
171
28


Solution structure and dynamics of the wild-type pseudoknot of human telomerase RNA.
Nak-Kyoon Kim, Qi Zhang, Jing Zhou, Carla A Theimer, Robert D Peterson, Juli Feigon. J Mol Biol 2008
63
28

Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold.
Joseph A Liberman, Mohammad Salim, Jolanta Krucinska, Joseph E Wedekind. Nat Chem Biol 2013
50
28


Drugging the RNA World.
Matthew D Disney, Brendan G Dwyer, Jessica L Childs-Disney. Cold Spring Harb Perspect Biol 2018
31
28

In-line probing analysis of riboswitches.
Elizabeth E Regulski, Ronald R Breaker. Methods Mol Biol 2008
213
28

Selective small-molecule inhibition of an RNA structural element.
John A Howe, Hao Wang, Thierry O Fischmann, Carl J Balibar, Li Xiao, Andrew M Galgoci, Juliana C Malinverni, Todd Mayhood, Artjohn Villafania, Ali Nahvi,[...]. Nature 2015
185
28

Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways.
Jérôme Mulhbacher, Eric Brouillette, Marianne Allard, Louis-Charles Fortier, François Malouin, Daniel A Lafontaine. PLoS Pathog 2010
108
28

Riboswitches as antibacterial drug targets.
Kenneth F Blount, Ronald R Breaker. Nat Biotechnol 2006
275
28


[20] Processing of X-ray diffraction data collected in oscillation mode.
Zbyszek Otwinowski, Wladek Minor. Methods Enzymol 1997
28

Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.
Joseph V Geisberg, Zarmik Moqtaderi, Xiaochun Fan, Fatih Ozsolak, Kevin Struhl. Cell 2014
136
28

Molecular Basis for poly(A) RNP Architecture and Recognition by the Pan2-Pan3 Deadenylase.
Ingmar B Schäfer, Masami Yamashita, Jan Michael Schuller, Steffen Schüssler, Peter Reichelt, Mike Strauss, Elena Conti. Cell 2019
16
28

Linking crystallographic model and data quality.
P Andrew Karplus, Kay Diederichs. Science 2012
28


Phaser crystallographic software.
Airlie J McCoy, Ralf W Grosse-Kunstleve, Paul D Adams, Martyn D Winn, Laurent C Storoni, Randy J Read. J Appl Crystallogr 2007
28

Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.
George M Sheldrick. Acta Crystallogr D Biol Crystallogr 2010
840
28


Messenger RNA turnover in eukaryotes: pathways and enzymes.
Sylke Meyer, Claudia Temme, Elmar Wahle. Crit Rev Biochem Mol Biol 2004
270
28

Cis-acting ribozymes for the production of RNA in vitro transcripts with defined 5' and 3' ends.
Johanna M Avis, Graeme L Conn, Scott C Walker. Methods Mol Biol 2012
21
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.