Tracy Coelho, Enrico Mossotto, Yifang Gao, Rachel Haggarty, James J Ashton, Akshay Batra, Imogen S Stafford, Robert M Beattie, Anthony P Williams, Sarah Ennis. J Pediatr Gastroenterol Nutr 2020
Times Cited: 3
Times Cited: 3
Times Cited
Times Co-cited
Similarity
Personalising medicine in inflammatory bowel disease-current and future perspectives.
James J Ashton, Enrico Mossotto, Sarah Ennis, R Mark Beattie. Transl Pediatr 2019
James J Ashton, Enrico Mossotto, Sarah Ennis, R Mark Beattie. Transl Pediatr 2019
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NOD1 and NOD2: signaling, host defense, and inflammatory disease.
Roberta Caruso, Neil Warner, Naohiro Inohara, Gabriel Núñez. Immunity 2014
Roberta Caruso, Neil Warner, Naohiro Inohara, Gabriel Núñez. Immunity 2014
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Pathway paradigms revealed from the genetics of inflammatory bowel disease.
Daniel B Graham, Ramnik J Xavier. Nature 2020
Daniel B Graham, Ramnik J Xavier. Nature 2020
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Genetic Sequencing of Pediatric Patients Identifies Mutations in Monogenic Inflammatory Bowel Disease Genes that Translate to Distinct Clinical Phenotypes.
James J Ashton, Enrico Mossotto, Imogen S Stafford, Rachel Haggarty, Tracy A F Coelho, Akshay Batra, Nadeem A Afzal, Matthew Mort, David Bunyan, Robert Mark Beattie,[...]. Clin Transl Gastroenterol 2020
James J Ashton, Enrico Mossotto, Imogen S Stafford, Rachel Haggarty, Tracy A F Coelho, Akshay Batra, Nadeem A Afzal, Matthew Mort, David Bunyan, Robert Mark Beattie,[...]. Clin Transl Gastroenterol 2020
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WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
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Differential expression analysis for sequence count data.
Simon Anders, Wolfgang Huber. Genome Biol 2010
Simon Anders, Wolfgang Huber. Genome Biol 2010
66
Single-Cell Analysis of Crohn's Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy.
Jerome C Martin, Christie Chang, Gilles Boschetti, Ryan Ungaro, Mamta Giri, John A Grout, Kyle Gettler, Ling-Shiang Chuang, Shikha Nayar, Alexander J Greenstein,[...]. Cell 2019
Jerome C Martin, Christie Chang, Gilles Boschetti, Ryan Ungaro, Mamta Giri, John A Grout, Kyle Gettler, Ling-Shiang Chuang, Shikha Nayar, Alexander J Greenstein,[...]. Cell 2019
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EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data.
Aaron T L Lun, Samantha Riesenfeld, Tallulah Andrews, The Phuong Dao, Tomas Gomes, John C Marioni. Genome Biol 2019
Aaron T L Lun, Samantha Riesenfeld, Tallulah Andrews, The Phuong Dao, Tomas Gomes, John C Marioni. Genome Biol 2019
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Resolving cellular systems by ultra-sensitive and economical single-cell transcriptome filtering.
Andres F Vallejo, James Davies, Amit Grover, Ching-Hsuan Tsai, Robert Jepras, Marta E Polak, Jonathan West. iScience 2021
Andres F Vallejo, James Davies, Amit Grover, Ching-Hsuan Tsai, Robert Jepras, Marta E Polak, Jonathan West. iScience 2021
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BBKNN: fast batch alignment of single cell transcriptomes.
Krzysztof Polański, Matthew D Young, Zhichao Miao, Kerstin B Meyer, Sarah A Teichmann, Jong-Eun Park. Bioinformatics 2020
Krzysztof Polański, Matthew D Young, Zhichao Miao, Kerstin B Meyer, Sarah A Teichmann, Jong-Eun Park. Bioinformatics 2020
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Differential regulation of chemokines by IL-17 in colonic epithelial cells.
Jimmy W Lee, Ping Wang, Michael G Kattah, Sawsan Youssef, Lawrence Steinman, Kathryn DeFea, Daniel S Straus. J Immunol 2008
Jimmy W Lee, Ping Wang, Michael G Kattah, Sawsan Youssef, Lawrence Steinman, Kathryn DeFea, Daniel S Straus. J Immunol 2008
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Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.
Aaron T L Lun, Karsten Bach, John C Marioni. Genome Biol 2016
Aaron T L Lun, Karsten Bach, John C Marioni. Genome Biol 2016
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Is faecal calprotectin equally useful in all Crohn's disease locations? A prospective, comparative study.
Kamila Stawczyk-Eder, Piotr Eder, Liliana Lykowska-Szuber, Iwona Krela-Kazmierczak, Katarzyna Klimczak, Aleksandra Szymczak, Patrycja Szachta, Katarzyna Katulska, Krzysztof Linke. Arch Med Sci 2015
Kamila Stawczyk-Eder, Piotr Eder, Liliana Lykowska-Szuber, Iwona Krela-Kazmierczak, Katarzyna Klimczak, Aleksandra Szymczak, Patrycja Szachta, Katarzyna Katulska, Krzysztof Linke. Arch Med Sci 2015
33
Assessment of the psoriatic transcriptome in a large sample: additional regulated genes and comparisons with in vitro models.
Johann E Gudjonsson, Jun Ding, Andrew Johnston, Trilokraj Tejasvi, Andrew M Guzman, Rajan P Nair, John J Voorhees, Goncalo R Abecasis, James T Elder. J Invest Dermatol 2010
Johann E Gudjonsson, Jun Ding, Andrew Johnston, Trilokraj Tejasvi, Andrew M Guzman, Rajan P Nair, John J Voorhees, Goncalo R Abecasis, James T Elder. J Invest Dermatol 2010
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Evolution of the immune system in humans from infancy to old age.
A Katharina Simon, Georg A Hollander, Andrew McMichael. Proc Biol Sci 2015
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ESPGHAN revised porto criteria for the diagnosis of inflammatory bowel disease in children and adolescents.
Arie Levine, Sibylle Koletzko, Dan Turner, Johanna C Escher, Salvatore Cucchiara, Lissy de Ridder, Kaija-Leena Kolho, Gabor Veres, Richard K Russell, Anders Paerregaard,[...]. J Pediatr Gastroenterol Nutr 2014
Arie Levine, Sibylle Koletzko, Dan Turner, Johanna C Escher, Salvatore Cucchiara, Lissy de Ridder, Kaija-Leena Kolho, Gabor Veres, Richard K Russell, Anders Paerregaard,[...]. J Pediatr Gastroenterol Nutr 2014
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HitPredict version 4: comprehensive reliability scoring of physical protein-protein interactions from more than 100 species.
Yosvany López, Kenta Nakai, Ashwini Patil. Database (Oxford) 2015
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DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome.
Kate Joanne Howell, Judith Kraiczy, Komal M Nayak, Marco Gasparetto, Alexander Ross, Claire Lee, Tim N Mak, Bon-Kyoung Koo, Nitin Kumar, Trevor Lawley,[...]. Gastroenterology 2018
Kate Joanne Howell, Judith Kraiczy, Komal M Nayak, Marco Gasparetto, Alexander Ross, Claire Lee, Tim N Mak, Bon-Kyoung Koo, Nitin Kumar, Trevor Lawley,[...]. Gastroenterology 2018
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The diagnostic approach to monogenic very early onset inflammatory bowel disease.
Holm H Uhlig, Tobias Schwerd, Sibylle Koletzko, Neil Shah, Jochen Kammermeier, Abdul Elkadri, Jodie Ouahed, David C Wilson, Simon P Travis, Dan Turner,[...]. Gastroenterology 2014
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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
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Th17 Cells in Inflammatory Bowel Disease: An Update for the Clinician.
Guoqing Hou, Shrinivas Bishu. Inflamm Bowel Dis 2020
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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis.
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Marie-Agnès Dillies, Andrea Rau, Julie Aubert, Christelle Hennequet-Antier, Marine Jeanmougin, Nicolas Servant, Céline Keime, Guillemette Marot, David Castel, Jordi Estelle,[...]. Brief Bioinform 2013
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Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study.
Subra Kugathasan, Lee A Denson, Thomas D Walters, Mi-Ok Kim, Urko M Marigorta, Melanie Schirmer, Kajari Mondal, Chunyan Liu, Anne Griffiths, Joshua D Noe,[...]. Lancet 2017
Subra Kugathasan, Lee A Denson, Thomas D Walters, Mi-Ok Kim, Urko M Marigorta, Melanie Schirmer, Kajari Mondal, Chunyan Liu, Anne Griffiths, Joshua D Noe,[...]. Lancet 2017
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Erratum: Oncostatin M drives intestinal inflammation and predicts response to tumor necrosis factor-neutralizing therapy in patients with inflammatory bowel disease.
Nathaniel R West, Ahmed N Hegazy, Benjamin M J Owens, Samuel J Bullers, Bryan Linggi, Sofia Buonocore, Margherita Coccia, Dieter Görtz, Sébastien This, Krista Stockenhuber,[...]. Nat Med 2017
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From Louvain to Leiden: guaranteeing well-connected communities.
V A Traag, L Waltman, N J van Eck. Sci Rep 2019
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STAR: ultrafast universal RNA-seq aligner.
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Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
33
SCANPY: large-scale single-cell gene expression data analysis.
F Alexander Wolf, Philipp Angerer, Fabian J Theis. Genome Biol 2018
F Alexander Wolf, Philipp Angerer, Fabian J Theis. Genome Biol 2018
33
CXCR1-binding chemokines in inflammatory bowel diseases: down-regulated IL-8/CXCL8 production by leukocytes in Crohn's disease and selective GCP-2/CXCL6 expression in inflamed intestinal tissue.
Klara Gijsbers, Gert Van Assche, Sofie Joossens, Sofie Struyf, Paul Proost, Paul Rutgeerts, Karel Geboes, Jo Van Damme. Eur J Immunol 2004
Klara Gijsbers, Gert Van Assche, Sofie Joossens, Sofie Struyf, Paul Proost, Paul Rutgeerts, Karel Geboes, Jo Van Damme. Eur J Immunol 2004
33
Next generation sequencing and functional pathway analysis to understand the mechanism of action of copper-tolfenamic acid against pancreatic cancer cells.
Myrna Hurtado, Laszlo Prokai, Umesh T Sankpal, Blair Levesque, Rajasekhar Maram, Jaya Chhabra, Deondra T Brown, Raj K Gurung, Alvin A Holder, Jamboor K Vishwanatha,[...]. Process Biochem 2020
Myrna Hurtado, Laszlo Prokai, Umesh T Sankpal, Blair Levesque, Rajasekhar Maram, Jaya Chhabra, Deondra T Brown, Raj K Gurung, Alvin A Holder, Jamboor K Vishwanatha,[...]. Process Biochem 2020
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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
33
CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses.
Pedro S T Russo, Gustavo R Ferreira, Lucas E Cardozo, Matheus C Bürger, Raul Arias-Carrasco, Sandra R Maruyama, Thiago D C Hirata, Diógenes S Lima, Fernando M Passos, Kiyoshi F Fukutani,[...]. BMC Bioinformatics 2018
Pedro S T Russo, Gustavo R Ferreira, Lucas E Cardozo, Matheus C Bürger, Raul Arias-Carrasco, Sandra R Maruyama, Thiago D C Hirata, Diógenes S Lima, Fernando M Passos, Kiyoshi F Fukutani,[...]. BMC Bioinformatics 2018
33
Genetics and pathogenesis of inflammatory bowel disease.
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
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Corrigendum. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.
Yael Haberman, Timothy L Tickle, Phillip J Dexheimer, Mi-Ok Kim, Dora Tang, Rebekah Karns, Robert N Baldassano, Joshua D Noe, Joel Rosh, James Markowitz,[...]. J Clin Invest 2015
Yael Haberman, Timothy L Tickle, Phillip J Dexheimer, Mi-Ok Kim, Dora Tang, Rebekah Karns, Robert N Baldassano, Joshua D Noe, Joel Rosh, James Markowitz,[...]. J Clin Invest 2015
33
Pazopanib for treatment of typical solitary fibrous tumours: a multicentre, single-arm, phase 2 trial.
Javier Martin-Broto, Josefina Cruz, Nicolas Penel, Axel Le Cesne, Nadia Hindi, Pablo Luna, David S Moura, Daniel Bernabeu, Enrique de Alava, Jose Antonio Lopez-Guerrero,[...]. Lancet Oncol 2020
Javier Martin-Broto, Josefina Cruz, Nicolas Penel, Axel Le Cesne, Nadia Hindi, Pablo Luna, David S Moura, Daniel Bernabeu, Enrique de Alava, Jose Antonio Lopez-Guerrero,[...]. Lancet Oncol 2020
33
Serum interleukin 17 levels in patients with Crohn's disease: real life data.
Abdurrahman Sahin, Turan Calhan, Mustafa Cengiz, Resul Kahraman, Kubra Aydin, Kamil Ozdil, May Korachi, H Mehmet Sokmen. Dis Markers 2014
Abdurrahman Sahin, Turan Calhan, Mustafa Cengiz, Resul Kahraman, Kubra Aydin, Kamil Ozdil, May Korachi, H Mehmet Sokmen. Dis Markers 2014
33
Low TREM1 expression in whole blood predicts anti-TNF response in inflammatory bowel disease.
Bram Verstockt, Sare Verstockt, Jonas Dehairs, Vera Ballet, Helene Blevi, Willem-Jan Wollants, Christine Breynaert, Gert Van Assche, Séverine Vermeire, Marc Ferrante. EBioMedicine 2019
Bram Verstockt, Sare Verstockt, Jonas Dehairs, Vera Ballet, Helene Blevi, Willem-Jan Wollants, Christine Breynaert, Gert Van Assche, Séverine Vermeire, Marc Ferrante. EBioMedicine 2019
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Targeted RNA Sequencing Assay to Characterize Gene Expression and Genomic Alterations.
Dorrelyn P Martin, Jharna Miya, Julie W Reeser, Sameek Roychowdhury. J Vis Exp 2016
Dorrelyn P Martin, Jharna Miya, Julie W Reeser, Sameek Roychowdhury. J Vis Exp 2016
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The NCATS BioPlanet - An Integrated Platform for Exploring the Universe of Cellular Signaling Pathways for Toxicology, Systems Biology, and Chemical Genomics.
Ruili Huang, Ivan Grishagin, Yuhong Wang, Tongan Zhao, Jon Greene, John C Obenauer, Deborah Ngan, Dac-Trung Nguyen, Rajarshi Guha, Ajit Jadhav,[...]. Front Pharmacol 2019
Ruili Huang, Ivan Grishagin, Yuhong Wang, Tongan Zhao, Jon Greene, John C Obenauer, Deborah Ngan, Dac-Trung Nguyen, Rajarshi Guha, Ajit Jadhav,[...]. Front Pharmacol 2019
33
Comparison of Reproducibility, Accuracy, Sensitivity, and Specificity of miRNA Quantification Platforms.
Paula M Godoy, Andrea J Barczak, Peter DeHoff, Srimeenakshi Srinivasan, Alton Etheridge, David Galas, Saumya Das, David J Erle, Louise C Laurent. Cell Rep 2019
Paula M Godoy, Andrea J Barczak, Peter DeHoff, Srimeenakshi Srinivasan, Alton Etheridge, David Galas, Saumya Das, David J Erle, Louise C Laurent. Cell Rep 2019
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ToppGene Suite for gene list enrichment analysis and candidate gene prioritization.
Jing Chen, Eric E Bardes, Bruce J Aronow, Anil G Jegga. Nucleic Acids Res 2009
Jing Chen, Eric E Bardes, Bruce J Aronow, Anil G Jegga. Nucleic Acids Res 2009
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Increased expression of interleukin 17 in inflammatory bowel disease.
S Fujino, A Andoh, S Bamba, A Ogawa, K Hata, Y Araki, T Bamba, Y Fujiyama. Gut 2003
S Fujino, A Andoh, S Bamba, A Ogawa, K Hata, Y Araki, T Bamba, Y Fujiyama. Gut 2003
33
Loss of interleukin-10 signaling and infantile inflammatory bowel disease: implications for diagnosis and therapy.
Daniel Kotlarz, Rita Beier, Dhaarini Murugan, Jana Diestelhorst, Ole Jensen, Kaan Boztug, Dietmar Pfeifer, Hans Kreipe, Eva-Doreen Pfister, Ulrich Baumann,[...]. Gastroenterology 2012
Daniel Kotlarz, Rita Beier, Dhaarini Murugan, Jana Diestelhorst, Ole Jensen, Kaan Boztug, Dietmar Pfeifer, Hans Kreipe, Eva-Doreen Pfister, Ulrich Baumann,[...]. Gastroenterology 2012
33
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage.
Dvir Aran, Agnieszka P Looney, Leqian Liu, Esther Wu, Valerie Fong, Austin Hsu, Suzanna Chak, Ram P Naikawadi, Paul J Wolters, Adam R Abate,[...]. Nat Immunol 2019
Dvir Aran, Agnieszka P Looney, Leqian Liu, Esther Wu, Valerie Fong, Austin Hsu, Suzanna Chak, Ram P Naikawadi, Paul J Wolters, Adam R Abate,[...]. Nat Immunol 2019
33
Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease.
Nathan P Palmer, Jocelyn A Silvester, Jessica J Lee, Andrew L Beam, Inbar Fried, Vladimir I Valtchinov, Fedik Rahimov, Sek Won Kong, Saum Ghodoussipour, Helen C Hood,[...]. PLoS One 2019
Nathan P Palmer, Jocelyn A Silvester, Jessica J Lee, Andrew L Beam, Inbar Fried, Vladimir I Valtchinov, Fedik Rahimov, Sek Won Kong, Saum Ghodoussipour, Helen C Hood,[...]. PLoS One 2019
33
Clinical and Genomic Correlates of Neutrophil Reactive Oxygen Species Production in Pediatric Patients With Crohn's Disease.
Lee A Denson, Ingrid Jurickova, Rebekah Karns, Kelly A Shaw, David J Cutler, David T Okou, Anne Dodd, Kathryn Quinn, Kajari Mondal, Bruce J Aronow,[...]. Gastroenterology 2018
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33
The incidence and nature of prescribing and medication administration errors in paediatric inpatients.
Maisoon Abdullah Ghaleb, Nick Barber, Bryony Dean Franklin, Ian Chi Kei Wong. Arch Dis Child 2010
Maisoon Abdullah Ghaleb, Nick Barber, Bryony Dean Franklin, Ian Chi Kei Wong. Arch Dis Child 2010
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Using a Machine Learning System to Identify and Prevent Medication Prescribing Errors: A Clinical and Cost Analysis Evaluation.
Ronen Rozenblum, Rosa Rodriguez-Monguio, Lynn A Volk, Katherine J Forsythe, Sara Myers, Maria McGurrin, Deborah H Williams, David W Bates, Gordon Schiff, Enrique Seoane-Vazquez. Jt Comm J Qual Patient Saf 2020
Ronen Rozenblum, Rosa Rodriguez-Monguio, Lynn A Volk, Katherine J Forsythe, Sara Myers, Maria McGurrin, Deborah H Williams, David W Bates, Gordon Schiff, Enrique Seoane-Vazquez. Jt Comm J Qual Patient Saf 2020
33
Genomic and clinical profiling of a national nephrotic syndrome cohort advocates a precision medicine approach to disease management.
Agnieszka Bierzynska, Hugh J McCarthy, Katrina Soderquest, Ethan S Sen, Elizabeth Colby, Wen Y Ding, Marwa M Nabhan, Larissa Kerecuk, Shivram Hegde, David Hughes,[...]. Kidney Int 2017
Agnieszka Bierzynska, Hugh J McCarthy, Katrina Soderquest, Ethan S Sen, Elizabeth Colby, Wen Y Ding, Marwa M Nabhan, Larissa Kerecuk, Shivram Hegde, David Hughes,[...]. Kidney Int 2017
33
Development and validation of a diagnostic model for early differentiation of sepsis and non-infectious SIRS in critically ill children - a data-driven approach using machine-learning algorithms.
Florian Lamping, Thomas Jack, Nicole Rübsamen, Michael Sasse, Philipp Beerbaum, Rafael T Mikolajczyk, Martin Boehne, André Karch. BMC Pediatr 2018
Florian Lamping, Thomas Jack, Nicole Rübsamen, Michael Sasse, Philipp Beerbaum, Rafael T Mikolajczyk, Martin Boehne, André Karch. BMC Pediatr 2018
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Deep Learning for Improved Risk Prediction in Surgical Outcomes.
Ali Jalali, Hannah Lonsdale, Nhue Do, Jacquelin Peck, Monesha Gupta, Shelby Kutty, Sharon R Ghazarian, Jeffrey P Jacobs, Mohamed Rehman, Luis M Ahumada. Sci Rep 2020
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33
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.