A citation-based method for searching scientific literature

Sha Yu, V Narry Kim. Nat Rev Mol Cell Biol 2020
Times Cited: 11







List of co-cited articles
49 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


TAIL-seq: genome-wide determination of poly(A) tail length and 3' end modifications.
Hyeshik Chang, Jaechul Lim, Minju Ha, V Narry Kim. Mol Cell 2014
207
36

RNA uridylation: a key posttranscriptional modification shaping the coding and noncoding transcriptome.
Caroline De Almeida, Hélène Scheer, Hélène Zuber, Dominique Gagliardi. Wiley Interdiscip Rev RNA 2018
34
27

Poly(A)-tail profiling reveals an embryonic switch in translational control.
Alexander O Subtelny, Stephen W Eichhorn, Grace R Chen, Hazel Sive, David P Bartel. Nature 2014
329
27

mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome.
Marcos Morgan, Christian Much, Monica DiGiacomo, Chiara Azzi, Ivayla Ivanova, Dimitrios M Vitsios, Jelena Pistolic, Paul Collier, Pedro N Moreira, Vladimir Benes,[...]. Nature 2017
61
27

Uridylation by TUT4 and TUT7 marks mRNA for degradation.
Jaechul Lim, Minju Ha, Hyeshik Chang, S Chul Kwon, Dhirendra K Simanshu, Dinshaw J Patel, V Narry Kim. Cell 2014
139
27

Terminal uridylyltransferases target RNA viruses as part of the innate immune system.
Jérémie Le Pen, Hongbing Jiang, Tomás Di Domenico, Emma Kneuss, Joanna Kosałka, Christian Leung, Marcos Morgan, Christian Much, Konrad L M Rudolph, Anton J Enright,[...]. Nat Struct Mol Biol 2018
33
27

Uridylation by TUT4/7 Restricts Retrotransposition of Human LINE-1s.
Zbigniew Warkocki, Paweł S Krawczyk, Dorota Adamska, Krystian Bijata, Jose L Garcia-Perez, Andrzej Dziembowski. Cell 2018
29
27

Molecular Basis for poly(A) RNP Architecture and Recognition by the Pan2-Pan3 Deadenylase.
Ingmar B Schäfer, Masami Yamashita, Jan Michael Schuller, Steffen Schüssler, Peter Reichelt, Mike Strauss, Elena Conti. Cell 2019
16
27

The exoribonuclease Dis3L2 defines a novel eukaryotic RNA degradation pathway.
Michal Malecki, Sandra C Viegas, Tiago Carneiro, Pawel Golik, Clémentine Dressaire, Miguel G Ferreira, Cecília M Arraiano. EMBO J 2013
133
18

TUT7 catalyzes the uridylation of the 3' end for rapid degradation of histone mRNA.
Patrick E Lackey, Joshua D Welch, William F Marzluff. RNA 2016
25
18

The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
B J Reinhart, F J Slack, M Basson, A E Pasquinelli, J C Bettinger, A E Rougvie, H R Horvitz, G Ruvkun. Nature 2000
18

The life of U6 small nuclear RNA, from cradle to grave.
Allison L Didychuk, Samuel E Butcher, David A Brow. RNA 2018
30
18

Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs.
Inha Heo, Minju Ha, Jaechul Lim, Mi-Jeong Yoon, Jong-Eun Park, S Chul Kwon, Hyeshik Chang, V Narry Kim. Cell 2012
193
18

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
660
18

Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity.
Stacia K Wyman, Emily C Knouf, Rachael K Parkin, Brian R Fritz, Daniel W Lin, Lucas M Dennis, Michael A Krouse, Philippa J Webster, Muneesh Tewari. Genome Res 2011
202
18

TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation.
Inha Heo, Chirlmin Joo, Young-Kook Kim, Minju Ha, Mi-Jeong Yoon, Jun Cho, Kyu-Hyeon Yeom, Jinju Han, V Narry Kim. Cell 2009
563
18

The Dynamics of Cytoplasmic mRNA Metabolism.
Timothy J Eisen, Stephen W Eichhorn, Alexander O Subtelny, Kathy S Lin, Sean E McGeary, Sumeet Gupta, David P Bartel. Mol Cell 2020
18
18

3' Uridylation controls mature microRNA turnover during CD4 T-cell activation.
Cristina Gutiérrez-Vázquez, Anton J Enright, Ana Rodríguez-Galán, Arantxa Pérez-García, Paul Collier, Matthew R Jones, Vladimir Benes, Joseph P Mizgerd, María Mittelbrunn, Almudena R Ramiro,[...]. RNA 2017
23
18

Mixed tailing by TENT4A and TENT4B shields mRNA from rapid deadenylation.
Jaechul Lim, Dongwan Kim, Young-Suk Lee, Minju Ha, Mihye Lee, Jinah Yeo, Hyeshik Chang, Jaewon Song, Kwangseog Ahn, V Narry Kim. Science 2018
43
18

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness.
A Maxwell Burroughs, Yoshinari Ando, Michiel J L de Hoon, Yasuhiro Tomaru, Takahiro Nishibu, Ryo Ukekawa, Taku Funakoshi, Tsutomu Kurokawa, Harukazu Suzuki, Yoshihide Hayashizaki,[...]. Genome Res 2010
249
18

3' RNA Uridylation in Epitranscriptomics, Gene Regulation, and Disease.
Miriam R Menezes, Julien Balzeau, John P Hagan. Front Mol Biosci 2018
23
18

Terminal Uridylyltransferases Execute Programmed Clearance of Maternal Transcriptome in Vertebrate Embryos.
Hyeshik Chang, Jinah Yeo, Jeong-Gyun Kim, Hyunjoon Kim, Jaechul Lim, Mihye Lee, Hyun Ho Kim, Jiyeon Ohk, Hee-Yeon Jeon, Hyunsook Lee,[...]. Mol Cell 2018
34
18

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.
Takayuki Katoh, Yuriko Sakaguchi, Kenjyo Miyauchi, Takeo Suzuki, Shin-Ichi Kashiwabara, Tadashi Baba, Tsutomu Suzuki. Genes Dev 2009
310
18


Dis3l2-Mediated Decay Is a Quality Control Pathway for Noncoding RNAs.
Mehdi Pirouz, Peng Du, Marzia Munafò, Richard I Gregory. Cell Rep 2016
56
18

Maturation of mammalian H/ACA box snoRNAs: PAPD5-dependent adenylation and PARN-dependent trimming.
Heike Berndt, Christiane Harnisch, Christiane Rammelt, Nadine Stöhr, Anne Zirkel, Juliane C Dohm, Heinz Himmelbauer, Joao-Paulo Tavanez, Stefan Hüttelmaier, Elmar Wahle. RNA 2012
103
18

PARN and TOE1 Constitute a 3' End Maturation Module for Nuclear Non-coding RNAs.
Ahyeon Son, Jong-Eun Park, V Narry Kim. Cell Rep 2018
29
18


Selective microRNA uridylation by Zcchc6 (TUT7) and Zcchc11 (TUT4).
James E Thornton, Peng Du, Lili Jing, Ljiljana Sjekloca, Shuibin Lin, Elena Grossi, Piotr Sliz, Leonard I Zon, Richard I Gregory. Nucleic Acids Res 2014
64
18

U-tail as a guardian against invading RNAs.
Jinah Yeo, V Narry Kim. Nat Struct Mol Biol 2018
7
28

TUT7 controls the fate of precursor microRNAs by using three different uridylation mechanisms.
Boseon Kim, Minju Ha, Luuk Loeff, Hyeshik Chang, Dhirendra K Simanshu, Sisi Li, Mohamed Fareh, Dinshaw J Patel, Chirlmin Joo, V Narry Kim. EMBO J 2015
57
18

FLAM-seq: full-length mRNA sequencing reveals principles of poly(A) tail length control.
Ivano Legnini, Jonathan Alles, Nikos Karaiskos, Salah Ayoub, Nikolaus Rajewsky. Nat Methods 2019
27
18

Revisiting the Closed-Loop Model and the Nature of mRNA 5'-3' Communication.
Quentin Vicens, Jeffrey S Kieft, Olivia S Rissland. Mol Cell 2018
38
18


XDS.
Wolfgang Kabsch. Acta Crystallogr D Biol Crystallogr 2010
18

Linking crystallographic model and data quality.
P Andrew Karplus, Kay Diederichs. Science 2012
18

Overview of the CCP4 suite and current developments.
Martyn D Winn, Charles C Ballard, Kevin D Cowtan, Eleanor J Dodson, Paul Emsley, Phil R Evans, Ronan M Keegan, Eugene B Krissinel, Andrew G W Leslie, Airlie McCoy,[...]. Acta Crystallogr D Biol Crystallogr 2011
18

Phaser crystallographic software.
Airlie J McCoy, Ralf W Grosse-Kunstleve, Paul D Adams, Martyn D Winn, Laurent C Storoni, Randy J Read. J Appl Crystallogr 2007
18

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
18

Reconstitution of recombinant human CCR4-NOT reveals molecular insights into regulated deadenylation.
Tobias Raisch, Chung-Te Chang, Yevgen Levdansky, Sowndarya Muthukumar, Stefan Raunser, Eugene Valkov. Nat Commun 2019
21
18

PABP Cooperates with the CCR4-NOT Complex to Promote mRNA Deadenylation and Block Precocious Decay.
Hyerim Yi, Joha Park, Minju Ha, Jaechul Lim, Hyeshik Chang, V Narry Kim. Mol Cell 2018
64
18

Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover.
Akio Yamashita, Tsung-Cheng Chang, Yukiko Yamashita, Wenmiao Zhu, Zhenping Zhong, Chyi-Ying A Chen, Ann-Bin Shyu. Nat Struct Mol Biol 2005
307
18

Human TOB, an antiproliferative transcription factor, is a poly(A)-binding protein-dependent positive regulator of cytoplasmic mRNA deadenylation.
Nader Ezzeddine, Tsung-Cheng Chang, Wenmiao Zhu, Akio Yamashita, Chyi-Ying A Chen, Zhenping Zhong, Yukiko Yamashita, Dinghai Zheng, Ann-Bin Shyu. Mol Cell Biol 2007
116
18

Structural basis for the recruitment of the human CCR4-NOT deadenylase complex by tristetraprolin.
Marc R Fabian, Filipp Frank, Christopher Rouya, Nadeem Siddiqui, Wi S Lai, Alexey Karetnikov, Perry J Blackshear, Bhushan Nagar, Nahum Sonenberg. Nat Struct Mol Biol 2013
144
18

Tales of Detailed Poly(A) Tails.
Angela L Nicholson, Amy E Pasquinelli. Trends Cell Biol 2019
33
18

mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases.
Michael W Webster, Ying-Hsin Chen, James A W Stowell, Najwa Alhusaini, Thomas Sweet, Brenton R Graveley, Jeff Coller, Lori A Passmore. Mol Cell 2018
76
18

Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency.
Taolan Zhao, Qing Huan, Jing Sun, Chunyan Liu, Xiuli Hou, Xiang Yu, Ian M Silverman, Yi Zhang, Brian D Gregory, Chun-Ming Liu,[...]. Genome Biol 2019
16
18

Efficient RNA polyuridylation by noncanonical poly(A) polymerases.
Olivia S Rissland, Andrea Mikulasova, Chris J Norbury. Mol Cell Biol 2007
120
18

Zcchc11-dependent uridylation of microRNA directs cytokine expression.
Matthew R Jones, Lee J Quinton, Matthew T Blahna, Joel R Neilson, Suneng Fu, Alexander R Ivanov, Dieter A Wolf, Joseph P Mizgerd. Nat Cell Biol 2009
215
18



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.