A citation-based method for searching scientific literature


List of co-cited articles
62 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
679
71

Phase separation drives heterochromatin domain formation.
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
729
71

Micron-scale coherence in interphase chromatin dynamics.
Alexandra Zidovska, David A Weitz, Timothy J Mitchison. Proc Natl Acad Sci U S A 2013
105
71

Dynamic Organization of Chromatin Domains Revealed by Super-Resolution Live-Cell Imaging.
Tadasu Nozaki, Ryosuke Imai, Mai Tanbo, Ryosuke Nagashima, Sachiko Tamura, Tomomi Tani, Yasumasa Joti, Masaru Tomita, Kayo Hibino, Masato T Kanemaki,[...]. Mol Cell 2017
176
42

Chromatin hydrodynamics.
Robijn Bruinsma, Alexander Y Grosberg, Yitzhak Rabin, Alexandra Zidovska. Biophys J 2014
50
42

Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
472
42

Dynamics of passive and active particles in the cell nucleus.
Feroz M Hameed, Madan Rao, G V Shivashankar. PLoS One 2012
30
42

Physical plasticity of the nucleus in stem cell differentiation.
J David Pajerowski, Kris Noel Dahl, Franklin L Zhong, Paul J Sammak, Dennis E Discher. Proc Natl Acad Sci U S A 2007
500
42

Organization of Chromatin by Intrinsic and Regulated Phase Separation.
Bryan A Gibson, Lynda K Doolittle, Maximillian W G Schneider, Liv E Jensen, Nathan Gamarra, Lisa Henry, Daniel W Gerlich, Sy Redding, Michael K Rosen. Cell 2019
261
42

Nucleolar dynamics and interactions with nucleoplasm in living cells.
Christina M Caragine, Shannon C Haley, Alexandra Zidovska. Elife 2019
22
42

Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci.
Lei Liu, Guang Shi, D Thirumalai, Changbong Hyeon. PLoS Comput Biol 2018
22
42

Chromosome dynamics near the sol-gel phase transition dictate the timing of remote genomic interactions.
Nimish Khanna, Yaojun Zhang, Joseph S Lucas, Olga K Dudko, Cornelis Murre. Nat Commun 2019
31
42

Interphase human chromosome exhibits out of equilibrium glassy dynamics.
Guang Shi, Lei Liu, Changbong Hyeon, D Thirumalai. Nat Commun 2018
41
42

Chromatin histone modifications and rigidity affect nuclear morphology independent of lamins.
Andrew D Stephens, Patrick Z Liu, Edward J Banigan, Luay M Almassalha, Vadim Backman, Stephen A Adam, Robert D Goldman, John F Marko. Mol Biol Cell 2018
102
42

Chromosome positioning from activity-based segregation.
Nirmalendu Ganai, Surajit Sengupta, Gautam I Menon. Nucleic Acids Res 2014
62
42

Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes.
Michele Di Pierro, Davit A Potoyan, Peter G Wolynes, José N Onuchic. Proc Natl Acad Sci U S A 2018
47
42

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates.
Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I Cisse. Science 2018
440
28

Genome architecture: domain organization of interphase chromosomes.
Wendy A Bickmore, Bas van Steensel. Cell 2013
450
28

Two independent modes of chromatin organization revealed by cohesin removal.
Wibke Schwarzer, Nezar Abdennur, Anton Goloborodko, Aleksandra Pekowska, Geoffrey Fudenberg, Yann Loe-Mie, Nuno A Fonseca, Wolfgang Huber, Christian H Haering, Leonid Mirny,[...]. Nature 2017
433
28

Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
667
28

Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.
Bogdan Bintu, Leslie J Mateo, Jun-Han Su, Nicholas A Sinnott-Armstrong, Mirae Parker, Seon Kinrot, Kei Yamaya, Alistair N Boettiger, Xiaowei Zhuang. Science 2018
308
28

Chromosome dynamics during interphase: a biophysical perspective.
Maxime Mc Tortora, Hossein Salari, Daniel Jost. Curr Opin Genet Dev 2020
7
28

DNA loop extrusion by human cohesin.
Iain F Davidson, Benedikt Bauer, Daniela Goetz, Wen Tang, Gordana Wutz, Jan-Michael Peters. Science 2019
203
28

Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II.
Ryosuke Nagashima, Kayo Hibino, S S Ashwin, Michael Babokhov, Shin Fujishiro, Ryosuke Imai, Tadasu Nozaki, Sachiko Tamura, Tomomi Tani, Hiroshi Kimura,[...]. J Cell Biol 2019
64
28

Human cohesin compacts DNA by loop extrusion.
Yoori Kim, Zhubing Shi, Hongshan Zhang, Ilya J Finkelstein, Hongtao Yu. Science 2019
186
28


Heterochromatin drives compartmentalization of inverted and conventional nuclei.
Martin Falk, Yana Feodorova, Natalia Naumova, Maxim Imakaev, Bryan R Lajoie, Heinrich Leonhardt, Boris Joffe, Job Dekker, Geoffrey Fudenberg, Irina Solovei,[...]. Nature 2019
172
28

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
721
28

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
626
28

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
28

Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
729
28

Organization and function of the 3D genome.
Boyan Bonev, Giacomo Cavalli. Nat Rev Genet 2016
388
28

Transient anomalous diffusion of telomeres in the nucleus of mammalian cells.
I Bronstein, Y Israel, E Kepten, S Mai, Y Shav-Tal, E Barkai, Y Garini. Phys Rev Lett 2009
220
28


Magnetic manipulation of nanorods in the nucleus of living cells.
Alfredo Celedon, Christopher M Hale, Denis Wirtz. Biophys J 2011
37
28

Correlated spatio-temporal fluctuations in chromatin compaction states characterize stem cells.
Shefali Talwar, Abhishek Kumar, Madan Rao, Gautam I Menon, G V Shivashankar. Biophys J 2013
46
28

Interphase chromosomes undergo constrained diffusional motion in living cells.
W F Marshall, A Straight, J F Marko, J Swedlow, A Dernburg, A Belmont, A W Murray, D A Agard, J W Sedat. Curr Biol 1997
481
28

Micro-organization and visco-elasticity of the interphase nucleus revealed by particle nanotracking.
Yiider Tseng, Jerry S H Lee, Thomas P Kole, Ingjye Jiang, Denis Wirtz. J Cell Sci 2004
156
28

Surface Fluctuations and Coalescence of Nucleolar Droplets in the Human Cell Nucleus.
Christina M Caragine, Shannon C Haley, Alexandra Zidovska. Phys Rev Lett 2018
37
28

RNA transcription modulates phase transition-driven nuclear body assembly.
Joel Berry, Stephanie C Weber, Nilesh Vaidya, Mikko Haataja, Clifford P Brangwynne. Proc Natl Acad Sci U S A 2015
229
28

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.
Job Dekker, Marc A Marti-Renom, Leonid A Mirny. Nat Rev Genet 2013
622
28

Structural and Dynamical Signatures of Local DNA Damage in Live Cells.
Jonah A Eaton, Alexandra Zidovska. Biophys J 2020
5
40


Bottom-up modeling of chromatin segregation due to epigenetic modifications.
Quinn MacPherson, Bruno Beltran, Andrew J Spakowitz. Proc Natl Acad Sci U S A 2018
42
28

Coexisting Liquid Phases Underlie Nucleolar Subcompartments.
Marina Feric, Nilesh Vaidya, Tyler S Harmon, Diana M Mitrea, Lian Zhu, Tiffany M Richardson, Richard W Kriwacki, Rohit V Pappu, Clifford P Brangwynne. Cell 2016
690
28

On the origin of shape fluctuations of the cell nucleus.
Fang-Yi Chu, Shannon C Haley, Alexandra Zidovska. Proc Natl Acad Sci U S A 2017
40
28

Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.
Baohui Chen, Luke A Gilbert, Beth A Cimini, Joerg Schnitzbauer, Wei Zhang, Gene-Wei Li, Jason Park, Elizabeth H Blackburn, Jonathan S Weissman, Lei S Qi,[...]. Cell 2013
28

Formation of correlated chromatin domains at nanoscale dynamic resolution during transcription.
Haitham A Shaban, Roman Barth, Kerstin Bystricky. Nucleic Acids Res 2018
39
28

ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.
Horng D Ou, Sébastien Phan, Thomas J Deerinck, Andrea Thor, Mark H Ellisman, Clodagh C O'Shea. Science 2017
361
28

Direct observation of nanomechanical properties of chromatin in living cells.
Anthony H B de Vries, Bea E Krenn, Roel van Driel, Vinod Subramaniam, Johannes S Kanger. Nano Lett 2007
46
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.