A citation-based method for searching scientific literature

Cheng Dong, Shun-Jia Chen, Artem Melnykov, Sara Weirich, Kelly Sun, Albert Jeltsch, Alexander Varshavsky, Jinrong Min. Proc Natl Acad Sci U S A 2020
Times Cited: 15







List of co-cited articles
176 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An N-end rule pathway that recognizes proline and destroys gluconeogenic enzymes.
Shun-Jia Chen, Xia Wu, Brandon Wadas, Jang-Hyun Oh, Alexander Varshavsky. Science 2017
112
93

Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway.
Cheng Dong, Heng Zhang, Li Li, Wolfram Tempel, Peter Loppnau, Jinrong Min. Nat Chem Biol 2018
50
86

N-degron and C-degron pathways of protein degradation.
Alexander Varshavsky. Proc Natl Acad Sci U S A 2019
221
66

The yeast GID complex, a novel ubiquitin ligase (E3) involved in the regulation of carbohydrate metabolism.
Olivier Santt, Thorsten Pfirrmann, Bernhard Braun, Jeannette Juretschke, Philipp Kimmig, Hartmut Scheel, Kay Hofmann, Michael Thumm, Dieter H Wolf. Mol Biol Cell 2008
96
66

Interconversion between Anticipatory and Active GID E3 Ubiquitin Ligase Conformations via Metabolically Driven Substrate Receptor Assembly.
Shuai Qiao, Christine R Langlois, Jakub Chrustowicz, Dawafuti Sherpa, Ozge Karayel, Fynn M Hansen, Viola Beier, Susanne von Gronau, Daniel Bollschweiler, Tillman Schäfer,[...]. Mol Cell 2020
29
66

Gid10 as an alternative N-recognin of the Pro/N-degron pathway.
Artem Melnykov, Shun-Jia Chen, Alexander Varshavsky. Proc Natl Acad Sci U S A 2019
24
60


The multi-subunit GID/CTLH E3 ubiquitin ligase promotes cell proliferation and targets the transcription factor Hbp1 for degradation.
Fabienne Lampert, Diana Stafa, Algera Goga, Martin Varis Soste, Samuel Gilberto, Natacha Olieric, Paola Picotti, Markus Stoffel, Matthias Peter. Elife 2018
49
53

Exploring the topology of the Gid complex, the E3 ubiquitin ligase involved in catabolite-induced degradation of gluconeogenic enzymes.
Ruth Menssen, Jörg Schweiggert, Jens Schreiner, Denis Kusevic, Julia Reuther, Bernhard Braun, Dieter H Wolf. J Biol Chem 2012
66
53

Regulation of the Gid ubiquitin ligase recognition subunit Gid4.
Ruth Menssen, Kim Bui, Dieter H Wolf. FEBS Lett 2018
17
53

GID E3 ligase supramolecular chelate assembly configures multipronged ubiquitin targeting of an oligomeric metabolic enzyme.
Dawafuti Sherpa, Jakub Chrustowicz, Shuai Qiao, Christine R Langlois, Laura A Hehl, Karthik Varma Gottemukkala, Fynn M Hansen, Ozge Karayel, Susanne von Gronau, J Rajan Prabu,[...]. Mol Cell 2021
15
53

A glycine-specific N-degron pathway mediates the quality control of protein N-myristoylation.
Richard T Timms, Zhiqian Zhang, David Y Rhee, J Wade Harper, Itay Koren, Stephen J Elledge. Science 2019
66
46


The N-end rule pathway and regulation by proteolysis.
Alexander Varshavsky. Protein Sci 2011
456
46

N-terminal acetylation of cellular proteins creates specific degradation signals.
Cheol-Sang Hwang, Anna Shemorry, Alexander Varshavsky. Science 2010
442
46

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
46

The GID ubiquitin ligase complex is a regulator of AMPK activity and organismal lifespan.
Huaize Liu, Jie Ding, Karl Köhnlein, Nadine Urban, Alessandro Ori, Pablo Villavicencio-Lorini, Peter Walentek, Lars-Oliver Klotz, Thomas Hollemann, Thorsten Pfirrmann. Autophagy 2020
29
46

Formyl-methionine as an N-degron of a eukaryotic N-end rule pathway.
Jeong-Mok Kim, Ok-Hee Seok, Shinyeong Ju, Ji-Eun Heo, Jeonghun Yeom, Da-Som Kim, Joo-Yeon Yoo, Alexander Varshavsky, Cheolju Lee, Cheol-Sang Hwang. Science 2018
48
40

Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases.
Woo Suk Choi, Byung-Cheon Jeong, Yoo Jin Joo, Myeong-Ryeol Lee, Joon Kim, Michael J Eck, Hyun Kyu Song. Nat Struct Mol Biol 2010
101
40

Catabolite degradation of fructose-1,6-bisphosphatase in the yeast Saccharomyces cerevisiae: a genome-wide screen identifies eight novel GID genes and indicates the existence of two degradation pathways.
Jochen Regelmann, Thomas Schüle, Frank S Josupeit, Jaroslav Horak, Matthias Rose, Karl-Dieter Entian, Michael Thumm, Dieter H Wolf. Mol Biol Cell 2003
119
40

The E2 Marie Kondo and the CTLH E3 ligase clear deposited RNA binding proteins during the maternal-to-zygotic transition.
Michael Zavortink, Lauren N Rutt, Svetlana Dzitoyeva, Jesslyn C Henriksen, Chloe Barrington, Danielle Y Bilodeau, Miranda Wang, Xiao Xiao Lily Chen, Olivia S Rissland. Elife 2020
14
42

DIA-based systems biology approach unveils E3 ubiquitin ligase-dependent responses to a metabolic shift.
Ozge Karayel, André C Michaelis, Matthias Mann, Brenda A Schulman, Christine R Langlois. Proc Natl Acad Sci U S A 2020
10
60

Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase.
Ka-Yiu Edwin Kong, Bernd Fischer, Matthias Meurer, Ilia Kats, Zhaoyan Li, Frank Rühle, Joseph D Barry, Daniel Kirrmaier, Veronika Chevyreva, Bryan-Joseph San Luis,[...]. Mol Cell 2021
15
40

The Eukaryotic Proteome Is Shaped by E3 Ubiquitin Ligases Targeting C-Terminal Degrons.
Itay Koren, Richard T Timms, Tomasz Kula, Qikai Xu, Mamie Z Li, Stephen J Elledge. Cell 2018
102
33

C-Terminal End-Directed Protein Elimination by CRL2 Ubiquitin Ligases.
Hsiu-Chuan Lin, Chi-Wei Yeh, Yen-Fu Chen, Ting-Ting Lee, Pei-Yun Hsieh, Domnita V Rusnac, Sung-Ya Lin, Stephen J Elledge, Ning Zheng, Hsueh-Chi S Yen. Mol Cell 2018
67
33

The Gid-complex: an emerging player in the ubiquitin ligase league.
Huaize Liu, Thorsten Pfirrmann. Biol Chem 2019
24
33

Wdr26 regulates nuclear condensation in developing erythroblasts.
Ru Zhen, Chingyee Moo, Zhenzhen Zhao, Mengying Chen, He Feng, Xiaojun Zheng, Liang Zhang, Jiahai Shi, Caiyong Chen. Blood 2020
26
33

RanBPM, Muskelin, p48EMLP, p44CTLH, and the armadillo-repeat proteins ARMC8alpha and ARMC8beta are components of the CTLH complex.
Nobuaki Kobayashi, Jun Yang, Atsuhisa Ueda, Takeyuki Suzuki, Kouji Tomaru, Mitsuhiro Takeno, Kenji Okuda, Yoshiaki Ishigatsubo. Gene 2007
87
33

Precise Temporal Regulation of Post-transcriptional Repressors Is Required for an Orderly Drosophila Maternal-to-Zygotic Transition.
Wen Xi Cao, Sarah Kabelitz, Meera Gupta, Eyan Yeung, Sichun Lin, Christiane Rammelt, Christian Ihling, Filip Pekovic, Timothy C H Low, Najeeb U Siddiqui,[...]. Cell Rep 2020
17
33

RMND5 from Xenopus laevis is an E3 ubiquitin-ligase and functions in early embryonic forebrain development.
Thorsten Pfirrmann, Pablo Villavicencio-Lorini, Abinash K Subudhi, Ruth Menssen, Dieter H Wolf, Thomas Hollemann. PLoS One 2015
23
33

The human GID complex engages two independent modules for substrate recruitment.
Weaam I Mohamed, Sophia L Park, Julius Rabl, Alexander Leitner, Daniel Boehringer, Matthias Peter. EMBO Rep 2021
6
83

Aminopeptidases trim Xaa-Pro proteins, initiating their degradation by the Pro/N-degron pathway.
Shun-Jia Chen, Leehyeon Kim, Hyun Kyu Song, Alexander Varshavsky. Proc Natl Acad Sci U S A 2021
8
62

The degradation signal in a short-lived protein.
A Bachmair, A Varshavsky. Cell 1989
358
26

Structural basis of substrate recognition and specificity in the N-end rule pathway.
Edna Matta-Camacho, Guennadi Kozlov, Flora F Li, Kalle Gehring. Nat Struct Mol Biol 2010
75
26


Recognition of the Diglycine C-End Degron by CRL2KLHDC2 Ubiquitin Ligase.
Domniţa-Valeria Rusnac, Hsiu-Chuan Lin, Daniele Canzani, Karena X Tien, Thomas R Hinds, Ashley F Tsue, Matthew F Bush, Hsueh-Chi S Yen, Ning Zheng. Mol Cell 2018
33
26

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
26

Gid9, a second RING finger protein contributes to the ubiquitin ligase activity of the Gid complex required for catabolite degradation.
Bernhard Braun, Thorsten Pfirrmann, Ruth Menssen, Kay Hofmann, Hartmut Scheel, Dieter H Wolf. FEBS Lett 2011
33
26



PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
26

The mammalian CTLH complex is an E3 ubiquitin ligase that targets its subunit muskelin for degradation.
Matthew E R Maitland, Gabriel Onea, Christopher A Chiasson, Xu Wang, Jun Ma, Sarah E Moor, Kathryn R Barber, Gilles A Lajoie, Gary S Shaw, Caroline Schild-Poulter. Sci Rep 2019
26
26

A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes.
Carsten Janke, Maria M Magiera, Nicole Rathfelder, Christof Taxis, Simone Reber, Hiromi Maekawa, Alexandra Moreno-Borchart, Georg Doenges, Etienne Schwob, Elmar Schiebel,[...]. Yeast 2004
26

An organelle-specific protein landscape identifies novel diseases and molecular mechanisms.
Karsten Boldt, Jeroen van Reeuwijk, Qianhao Lu, Konstantinos Koutroumpas, Thanh-Minh T Nguyen, Yves Texier, Sylvia E C van Beersum, Nicola Horn, Jason R Willer, Dorus A Mans,[...]. Nat Commun 2016
147
26

Cell signalling pathway regulation by RanBPM: molecular insights and disease implications.
Louisa M Salemi, Matthew E R Maitland, Christina J McTavish, Caroline Schild-Poulter. Open Biol 2017
29
26

Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin pools.
Stephen E Kaiser, Brigit E Riley, Thomas A Shaler, R Sean Trevino, Christopher H Becker, Howard Schulman, Ron R Kopito. Nat Methods 2011
159
26

biGBac enables rapid gene assembly for the expression of large multisubunit protein complexes.
Florian Weissmann, Georg Petzold, Ryan VanderLinden, Pim J Huis In 't Veld, Nicholas G Brown, Fabienne Lampert, Stefan Westermann, Holger Stark, Brenda A Schulman, Jan-Michael Peters. Proc Natl Acad Sci U S A 2016
128
26

The N-end rule pathway.
Takafumi Tasaki, Shashikanth M Sriram, Kyong Soo Park, Yong Tae Kwon. Annu Rev Biochem 2012
254
26

Crystal structure of yeast Gid10 in complex with Pro/N-degron.
Jin Seok Shin, Si Hoon Park, Leehyeon Kim, Jiwon Heo, Hyun Kyu Song. Biochem Biophys Res Commun 2021
5
80

Multifaceted N-Degron Recognition and Ubiquitylation by GID/CTLH E3 Ligases.
Jakub Chrustowicz, Dawafuti Sherpa, Joan Teyra, Mun Siong Loke, Grzegorz M Popowicz, Jerome Basquin, Michael Sattler, J Rajan Prabu, Sachdev S Sidhu, Brenda A Schulman. J Mol Biol 2022
5
80


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.