A citation-based method for searching scientific literature

Prasun Chakraborty. Mutat Res 2020
Times Cited: 5







List of co-cited articles
11 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Replication and transcription on a collision course: eukaryotic regulation mechanisms and implications for DNA stability.
Alessandra Brambati, Arianna Colosio, Luca Zardoni, Lorenzo Galanti, Giordano Liberi. Front Genet 2015
35
40

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
432
40

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
194
40

R-loops: formation, function, and relevance to cell stress.
David F Allison, Gang Greg Wang. Cell Stress 2019
33
40

Nascent Connections: R-Loops and Chromatin Patterning.
Frédéric Chédin. Trends Genet 2016
104
40

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
230
40


deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
40

R loops regulate promoter-proximal chromatin architecture and cellular differentiation.
Poshen B Chen, Hsiuyi V Chen, Diwash Acharya, Oliver J Rando, Thomas G Fazzio. Nat Struct Mol Biol 2015
82
40

R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
376
40



The Werner syndrome protein is involved in RNA polymerase II transcription.
A S Balajee, A Machwe, A May, M D Gray, J Oshima, G M Martin, J O Nehlin, R Brosh, D K Orren, V A Bohr. Mol Biol Cell 1999
110
20

DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.
Alessio De Magis, Stefano G Manzo, Marco Russo, Jessica Marinello, Rita Morigi, Olivier Sordet, Giovanni Capranico. Proc Natl Acad Sci U S A 2019
96
20

Structure of the human RECQ1 helicase reveals a putative strand-separation pin.
Ashley C W Pike, Binesh Shrestha, Venkateswarlu Popuri, Nicola Burgess-Brown, Laura Muzzolini, Silvia Costantini, Alessandro Vindigni, Opher Gileadi. Proc Natl Acad Sci U S A 2009
93
20

Human RECQL5 participates in the removal of endogenous DNA damage.
Takashi Tadokoro, Mahesh Ramamoorthy, Venkateswarlu Popuri, Alfred May, Jingyan Tian, Peter Sykora, Ivana Rybanska, David M Wilson, Deborah L Croteau, Vilhelm A Bohr. Mol Biol Cell 2012
26
20

Central role for the Werner syndrome protein/poly(ADP-ribose) polymerase 1 complex in the poly(ADP-ribosyl)ation pathway after DNA damage.
Cayetano von Kobbe, Jeanine A Harrigan, Alfred May, Patricia L Opresko, Lale Dawut, Wen-Hsing Cheng, Vilhelm A Bohr. Mol Cell Biol 2003
115
20

Fork Cleavage-Religation Cycle and Active Transcription Mediate Replication Restart after Fork Stalling at Co-transcriptional R-Loops.
Nagaraja Chappidi, Zuzana Nascakova, Barbora Boleslavska, Ralph Zellweger, Esin Isik, Martin Andrs, Shruti Menon, Jana Dobrovolna, Chiara Balbo Pogliano, Joao Matos,[...]. Mol Cell 2020
40
20

Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.
Aziz El Hage, Sarah L French, Ann L Beyer, David Tollervey. Genes Dev 2010
279
20

Physical interaction of RECQ5 helicase with RAD51 facilitates its anti-recombinase activity.
Sybille Schwendener, Steven Raynard, Shreya Paliwal, Anita Cheng, Radhakrishnan Kanagaraj, Igor Shevelev, Jeremy M Stark, Patrick Sung, Pavel Janscak. J Biol Chem 2010
63
20

Structural mimicry in transcription regulation of human RNA polymerase II by the DNA helicase RECQL5.
Susanne A Kassube, Martin Jinek, Jie Fang, Susan Tsutakawa, Eva Nogales. Nat Struct Mol Biol 2013
25
20

Dynamic assembly of end-joining complexes requires interaction between Ku70/80 and XRCC4.
Pierre-Olivier Mari, Bogdan I Florea, Stephan P Persengiev, Nicole S Verkaik, Hennie T Brüggenwirth, Mauro Modesti, Giuseppina Giglia-Mari, Karel Bezstarosti, Jeroen A A Demmers, Theo M Luider,[...]. Proc Natl Acad Sci U S A 2006
279
20

Telomere and ribosomal DNA repeats are chromosomal targets of the bloom syndrome DNA helicase.
James Schawalder, Enesa Paric, Norma F Neff. BMC Cell Biol 2003
43
20

Enhancement of c-Myc degradation by BLM helicase leads to delayed tumor initiation.
Suruchika Chandra, Raina Priyadarshini, Vinoth Madhavan, Shweta Tikoo, Mansoor Hussain, Richa Mudgal, Priyanka Modi, Vivek Srivastava, Sagar Sengupta. J Cell Sci 2013
17
20

Novel pro- and anti-recombination activities of the Bloom's syndrome helicase.
Dmitry V Bugreev, Xiong Yu, Edward H Egelman, Alexander V Mazin. Genes Dev 2007
231
20

Crystal structure of human RNA helicase A (DHX9): structural basis for unselective nucleotide base binding in a DEAD-box variant protein.
Patrick Schütz, Elisabet Wahlberg, Tobias Karlberg, Martin Hammarström, Ruairi Collins, Alex Flores, Herwig Schüler. J Mol Biol 2010
25
20

The Werner syndrome protein stimulates DNA polymerase beta strand displacement synthesis via its helicase activity.
Jeanine A Harrigan, Patricia L Opresko, Cayetano von Kobbe, Padmini S Kedar, Rajendra Prasad, Samuel H Wilson, Vilhelm A Bohr. J Biol Chem 2003
91
20

RECQL5/Recql5 helicase regulates homologous recombination and suppresses tumor formation via disruption of Rad51 presynaptic filaments.
Yiduo Hu, Steven Raynard, Michael G Sehorn, Xincheng Lu, Wendy Bussen, Lu Zheng, Jeremy M Stark, Ellen L Barnes, Peter Chi, Pavel Janscak,[...]. Genes Dev 2007
247
20


WRN helicase accelerates the transcription of ribosomal RNA as a component of an RNA polymerase I-associated complex.
Miwa Shiratori, Takahisa Suzuki, Chie Itoh, Makoto Goto, Yasuhiro Furuichi, Takehisa Matsumoto. Oncogene 2002
62
20

BLM Potentiates c-Jun Degradation and Alters Its Function as an Oncogenic Transcription Factor.
Raina Priyadarshini, Mansoor Hussain, Preeti Attri, Ekjot Kaur, Vivek Tripathi, Swati Priya, Parashar Dhapola, Dhurjhoti Saha, Vinoth Madhavan, Shantanu Chowdhury,[...]. Cell Rep 2018
11
20

Werner syndrome protein. I. DNA helicase and dna exonuclease reside on the same polypeptide.
J C Shen, M D Gray, J Oshima, A S Kamath-Loeb, M Fry, L A Loeb. J Biol Chem 1998
204
20


RECQ-like helicases Sgs1 and BLM regulate R-loop-associated genome instability.
Emily Yun-Chia Chang, Carolina A Novoa, Maria J Aristizabal, Yan Coulombe, Romulo Segovia, Richa Chaturvedi, Yaoqing Shen, Christelle Keong, Annie S Tam, Steven J M Jones,[...]. J Cell Biol 2017
52
20

Molecular recognition by the KIX domain and its role in gene regulation.
Jitendra K Thakur, Archana Yadav, Gitanjali Yadav. Nucleic Acids Res 2014
55
20

Transcription-replication encounters, consequences and genomic instability.
Anne Helmrich, Monica Ballarino, Evgeny Nudler, Laszlo Tora. Nat Struct Mol Biol 2013
172
20

Recognition of the unique structure of DNA:RNA hybrids.
Nicholas N Shaw, Dev P Arya. Biochimie 2008
72
20

Transcription-mediated replication hindrance: a major driver of genome instability.
Belén Gómez-González, Andrés Aguilera. Genes Dev 2019
78
20

RECQ5-dependent SUMOylation of DNA topoisomerase I prevents transcription-associated genome instability.
Min Li, Subhash Pokharel, Jiin-Tarng Wang, Xiaohua Xu, Yilun Liu. Nat Commun 2015
34
20

Linkage between Werner syndrome protein and the Mre11 complex via Nbs1.
Wen-Hsing Cheng, Cayetano von Kobbe, Patricia L Opresko, L Matthew Arthur, Kenshi Komatsu, Michael M Seidman, James P Carney, Vilhelm A Bohr. J Biol Chem 2004
92
20

Structural mechanisms of DNA binding and unwinding in bacterial RecQ helicases.
Kelly A Manthei, Morgan C Hill, Jordan E Burke, Samuel E Butcher, James L Keck. Proc Natl Acad Sci U S A 2015
41
20

Werner's syndrome helicase participates in transcription of phenobarbital-inducible CYP2B genes in rat and mouse liver.
Antoine Amaury Lachaud, Sacha Auclair-Vincent, Laurent Massip, Etienne Audet-Walsh, Michel Lebel, Alan Anderson. Biochem Pharmacol 2010
8
20

RecQ helicases: multiple roles in genome maintenance.
Rakesh R Khakhar, Jennifer A Cobb, Lotte Bjergbaek, Ian D Hickson, Susan M Gasser. Trends Cell Biol 2003
105
20


The Bloom's syndrome helicase can promote the regression of a model replication fork.
Christine Ralf, Ian D Hickson, Leonard Wu. J Biol Chem 2006
175
20

RecQ helicases: caretakers of the genome.
Ian D Hickson. Nat Rev Cancer 2003
541
20

The Bloom's syndrome gene product is homologous to RecQ helicases.
N A Ellis, J Groden, T Z Ye, J Straughen, D J Lennon, S Ciocci, M Proytcheva, J German. Cell 1995
20

Existence and consequences of G-quadruplex structures in DNA.
Pierre Murat, Shankar Balasubramanian. Curr Opin Genet Dev 2014
228
20

Regulation of BLM Nucleolar Localization.
Larissa Tangeman, Michael A McIlhatton, Patrick Grierson, Joanna Groden, Samir Acharya. Genes (Basel) 2016
8
20

RECQL5 at the Intersection of Replication and Transcription.
Zeid Hamadeh, Peter Lansdorp. Front Cell Dev Biol 2020
6
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.