A citation-based method for searching scientific literature

Erin E Killeavy, Gerwald Jogl, Steven T Gregory. Antibiotics (Basel) 2020
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Arrest peptides: cis-acting modulators of translation.
Koreaki Ito, Shinobu Chiba. Annu Rev Biochem 2013
135
50

An intact ribose moiety at A2602 of 23S rRNA is key to trigger peptidyl-tRNA hydrolysis during translation termination.
Melanie Amort, Brigitte Wotzel, Kamilla Bakowska-Zywicka, Matthias D Erlacher, Ronald Micura, Norbert Polacek. Nucleic Acids Res 2007
44
50


Exploring global motions and correlations in the ribosome.
Joanna Trylska, Valentina Tozzini, J Andrew McCammon. Biophys J 2005
90
50

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.
Jack A Dunkle, Leyi Wang, Michael B Feldman, Arto Pulk, Vincent B Chen, Gary J Kapral, Jonas Noeske, Jane S Richardson, Scott C Blanchard, Jamie H Doudna Cate. Science 2011
253
50

ATPase subdomain IA is a mediator of interdomain allostery in Hsp70 molecular chaperones.
Ignacio J General, Ying Liu, Mandy E Blackburn, Wenzhi Mao, Lila M Gierasch, Ivet Bahar. PLoS Comput Biol 2014
60
50

Mechanisms of SecM-mediated stalling in the ribosome.
James Gumbart, Eduard Schreiner, Daniel N Wilson, Roland Beckmann, Klaus Schulten. Biophys J 2012
53
50

Intersubunit Bridges of the Bacterial Ribosome.
Qi Liu, Kurt Fredrick. J Mol Biol 2016
47
50

Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin.
Joerg M Harms, Daniel N Wilson, Frank Schluenzen, Sean R Connell, Torsten Stachelhaus, Zaneta Zaborowska, Christian M T Spahn, Paola Fucini. Mol Cell 2008
196
50


Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.
Rebecca M Voorhees, Albert Weixlbaumer, David Loakes, Ann C Kelley, V Ramakrishnan. Nat Struct Mol Biol 2009
249
50

Insights into Cotranslational Nascent Protein Behavior from Computer Simulations.
Fabio Trovato, Edward P O'Brien. Annu Rev Biophys 2016
20
50

Cotranslational protein folding within the ribosome tunnel influences trigger-factor recruitment.
Ku-Feng Lin, Chia-Sui Sun, Yi-Chen Huang, Sunney I Chan, Jiri Koubek, Tzong-Huah Wu, Joseph J-T Huang. Biophys J 2012
17
50

The shape of the bacterial ribosome exit tunnel affects cotranslational protein folding.
Renuka Kudva, Pengfei Tian, Fátima Pardo-Avila, Marta Carroni, Robert B Best, Harris D Bernstein, Gunnar von Heijne. Elife 2018
28
50


Structure of the 70S ribosome complexed with mRNA and tRNA.
Maria Selmer, Christine M Dunham, Frank V Murphy, Albert Weixlbaumer, Sabine Petry, Ann C Kelley, John R Weir, V Ramakrishnan. Science 2006
938
50


Chemical engineering of the peptidyl transferase center reveals an important role of the 2'-hydroxyl group of A2451.
Matthias D Erlacher, Kathrin Lang, Nisha Shankaran, Brigitte Wotzel, Alexander Hüttenhofer, Ronald Micura, Alexander S Mankin, Norbert Polacek. Nucleic Acids Res 2005
65
50

The ribosomal exit tunnel functions as a discriminating gate.
Hitoshi Nakatogawa, Koreaki Ito. Cell 2002
366
50

Interaction of pleuromutilin derivatives with the ribosomal peptidyl transferase center.
Katherine S Long, Lykke H Hansen, Lene Jakobsen, Birte Vester. Antimicrob Agents Chemother 2006
63
50

The key function of a conserved and modified rRNA residue in the ribosomal response to the nascent peptide.
Nora Vázquez-Laslop, Haripriya Ramu, Dorota Klepacki, Krishna Kannan, Alexander S Mankin. EMBO J 2010
99
50

An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA.
T Martin Schmeing, Kevin S Huang, Scott A Strobel, Thomas A Steitz. Nature 2005
235
50

Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center.
Haripriya Ramu, Nora Vázquez-Laslop, Dorota Klepacki, Qing Dai, Joseph Piccirilli, Ronald Micura, Alexander S Mankin. Mol Cell 2011
81
50

WebPSN: a web server for high-throughput investigation of structural communication in biomacromolecules.
Michele Seeber, Angelo Felline, Francesco Raimondi, Simona Mariani, Francesca Fanelli. Bioinformatics 2015
25
50

SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center.
Shashi Bhushan, Thomas Hoffmann, Birgit Seidelt, Jens Frauenfeld, Thorsten Mielke, Otto Berninghausen, Daniel N Wilson, Roland Beckmann. PLoS Biol 2011
99
50

Cotranslational Folding of Proteins on the Ribosome.
Marija Liutkute, Ekaterina Samatova, Marina V Rodnina. Biomolecules 2020
27
50

RedMD--reduced molecular dynamics package.
Adam Górecki, Marcin Szypowski, Maciej Długosz, Joanna Trylska. J Comput Chem 2009
14
50


Signal sequence-independent membrane targeting of ribosomes containing short nascent peptides within the exit tunnel.
Thomas Bornemann, Johannes Jöckel, Marina V Rodnina, Wolfgang Wintermeyer. Nat Struct Mol Biol 2008
123
50


ClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic Resolution.
Zeynep Kurkcuoglu, Ivet Bahar, Pemra Doruker. J Chem Theory Comput 2016
27
50

ProDy: protein dynamics inferred from theory and experiments.
Ahmet Bakan, Lidio M Meireles, Ivet Bahar. Bioinformatics 2011
547
50

Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation.
Jie Zhou, Laura Lancaster, John Paul Donohue, Harry F Noller. Science 2013
155
50


Signal propagation in proteins and relation to equilibrium fluctuations.
Chakra Chennubhotla, Ivet Bahar. PLoS Comput Biol 2007
161
50

Structural insight into nascent polypeptide chain-mediated translational stalling.
Birgit Seidelt, C Axel Innis, Daniel N Wilson, Marco Gartmann, Jean-Paul Armache, Elizabeth Villa, Leonardo G Trabuco, Thomas Becker, Thorsten Mielke, Klaus Schulten,[...]. Science 2009
197
50

Bio3d: an R package for the comparative analysis of protein structures.
Barry J Grant, Ana P C Rodrigues, Karim M ElSawy, J Andrew McCammon, Leo S D Caves. Bioinformatics 2006
790
50

Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression.
Luis Rogelio Cruz-Vera, Soumitra Rajagopal, Catherine Squires, Charles Yanofsky. Mol Cell 2005
101
50

The signal recognition particle contacts uL23 and scans substrate translation inside the ribosomal tunnel.
Kärt Denks, Nadine Sliwinski, Veronika Erichsen, Bogdana Borodkina, Andrea Origi, Hans-Georg Koch. Nat Microbiol 2017
22
50

Bacterial Protein Synthesis as a Target for Antibiotic Inhibition.
Stefan Arenz, Daniel N Wilson. Cold Spring Harb Perspect Med 2016
46
50


The dynamics of SecM-induced translational stalling.
Albert Tsai, Guy Kornberg, Magnus Johansson, Jin Chen, Joseph D Puglisi. Cell Rep 2014
33
50

Cooperative Dynamics of Intact AMPA and NMDA Glutamate Receptors: Similarities and Subfamily-Specific Differences.
Anindita Dutta, James Krieger, Ji Young Lee, Javier Garcia-Nafria, Ingo H Greger, Ivet Bahar. Structure 2015
48
50


Phosphorylation of bacterial L9 and its functional implication in response to starvation stress.
Hairun Pei, Shengnan Han, Shaoyuan Yang, Zhen Lei, Jimin Zheng, Zongchao Jia. FEBS Lett 2017
4
50

The role of L1 stalk-tRNA interaction in the ribosome elongation cycle.
Leonardo G Trabuco, Eduard Schreiner, John Eargle, Peter Cornish, Taekjip Ha, Zaida Luthey-Schulten, Klaus Schulten. J Mol Biol 2010
72
50

Critical 23S rRNA interactions for macrolide-dependent ribosome stalling on the ErmCL nascent peptide chain.
Miriam Koch, Jessica Willi, Ugo Pradère, Jonathan Hall, Norbert Polacek. Nucleic Acids Res 2017
15
50


Nascent peptide side chains induce rearrangements in distinct locations of the ribosomal tunnel.
Jianli Lu, Zhengmao Hua, William R Kobertz, Carol Deutsch. J Mol Biol 2011
19
50

The critical role of the universally conserved A2602 of 23S ribosomal RNA in the release of the nascent peptide during translation termination.
Norbert Polacek, Maria J Gomez, Koichi Ito, Liqun Xiong, Yoshikazu Nakamura, Alexander Mankin. Mol Cell 2003
98
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.