A citation-based method for searching scientific literature

Pakavarin Louphrasitthiphol, Robert Siddaway, Alessia Loffreda, Vivian Pogenberg, Hans Friedrichsen, Alexander Schepsky, Zhiqiang Zeng, Min Lu, Thomas Strub, Rasmus Freter, Richard Lisle, Eda Suer, Benjamin Thomas, Benjamin Schuster-Böckler, Panagis Filippakopoulos, Mark Middleton, Xin Lu, E Elizabeth Patton, Irwin Davidson, Jean-Philippe Lambert, Matthias Wilmanns, Eiríkur Steingrímsson, Davide Mazza, Colin R Goding. Mol Cell 2020
Times Cited: 16







List of co-cited articles
137 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


MITF-the first 25 years.
Colin R Goding, Heinz Arnheiter. Genes Dev 2019
94
50

Mitf regulation of Dia1 controls melanoma proliferation and invasiveness.
Suzanne Carreira, Jane Goodall, Laurence Denat, Mercedes Rodriguez, Paolo Nuciforo, Keith S Hoek, Alessandro Testori, Lionel Larue, Colin R Goding. Genes Dev 2006
385
37

Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells.
Patrick Laurette, Thomas Strub, Dana Koludrovic, Céline Keime, Stéphanie Le Gras, Hannah Seberg, Eric Van Otterloo, Hana Imrichova, Robert Siddaway, Stein Aerts,[...]. Elife 2015
90
31

Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.
Jiji Chen, Zhengjian Zhang, Li Li, Bi-Chang Chen, Andrey Revyakin, Bassam Hajj, Wesley Legant, Maxime Dahan, Timothée Lionnet, Eric Betzig,[...]. Cell 2014
322
31


Single-Molecule Analysis Reveals Linked Cycles of RSC Chromatin Remodeling and Ace1p Transcription Factor Binding in Yeast.
Gunjan D Mehta, David A Ball, Peter R Eriksson, Razvan V Chereji, David J Clark, James G McNally, Tatiana S Karpova. Mol Cell 2018
23
25

Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
472
25

Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
729
25

Single-molecule analysis of steroid receptor and cofactor action in living cells.
Ville Paakinaho, Diego M Presman, David A Ball, Thomas A Johnson, R Louis Schiltz, Peter Levitt, Davide Mazza, Tatsuya Morisaki, Tatiana S Karpova, Gordon L Hager. Nat Commun 2017
65
25

3D imaging of Sox2 enhancer clusters in embryonic stem cells.
Zhe Liu, Wesley R Legant, Bi-Chang Chen, Li Li, Jonathan B Grimm, Luke D Lavis, Eric Betzig, Robert Tjian. Elife 2014
131
25

Melanoma plasticity and phenotypic diversity: therapeutic barriers and opportunities.
Florian Rambow, Jean-Christophe Marine, Colin R Goding. Genes Dev 2019
65
25

MITF controls the TCA cycle to modulate the melanoma hypoxia response.
Pakavarin Louphrasitthiphol, Ioanna Ledaki, Jagat Chauhan, Paola Falletta, Robert Siddaway, Francesca M Buffa, David R Mole, Tomoyoshi Soga, Colin R Goding. Pigment Cell Melanoma Res 2019
20
25

MITF and c-Jun antagonism interconnects melanoma dedifferentiation with pro-inflammatory cytokine responsiveness and myeloid cell recruitment.
Stefanie Riesenberg, Angela Groetchen, Robert Siddaway, Tobias Bald, Julia Reinhardt, Denise Smorra, Judith Kohlmeyer, Marcel Renn, Bengt Phung, Pia Aymans,[...]. Nat Commun 2015
110
25

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state.
Annelien Verfaillie, Hana Imrichova, Zeynep Kalender Atak, Michael Dewaele, Florian Rambow, Gert Hulselmans, Valerie Christiaens, Dmitry Svetlichnyy, Flavie Luciani, Laura Van den Mooter,[...]. Nat Commun 2015
203
25

Mutations at the mouse microphthalmia locus are associated with defects in a gene encoding a novel basic-helix-loop-helix-zipper protein.
C A Hodgkinson, K J Moore, A Nakayama, E Steingrímsson, N G Copeland, N A Jenkins, H Arnheiter. Cell 1993
895
18

MITF drives endolysosomal biogenesis and potentiates Wnt signaling in melanoma cells.
Diego Ploper, Vincent F Taelman, Lidia Robert, Brian S Perez, Björn Titz, Hsiao-Wang Chen, Thomas G Graeber, Erika von Euw, Antoni Ribas, Edward M De Robertis. Proc Natl Acad Sci U S A 2015
127
18

Molecular basis of mouse microphthalmia (mi) mutations helps explain their developmental and phenotypic consequences.
E Steingrímsson, K J Moore, M L Lamoreux, A R Ferré-D'Amaré, S K Burley, D C Zimring, L C Skow, C A Hodgkinson, H Arnheiter, N G Copeland. Nat Genet 1994
420
18

UV-Protection Timer Controls Linkage between Stress and Pigmentation Skin Protection Systems.
Hagar Malcov-Brog, Ayelet Alpert, Tamar Golan, Shivang Parikh, Alice Nordlinger, Francesca Netti, Danna Sheinboim, Iris Dror, Laetitia Thomas, Camille Cosson,[...]. Mol Cell 2018
15
20

Microphthalmia gene product as a signal transducer in cAMP-induced differentiation of melanocytes.
C Bertolotto, P Abbe, T J Hemesath, K Bille, D E Fisher, J P Ortonne, R Ballotti. J Cell Biol 1998
365
18

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
18

Steroid Receptors Reprogram FoxA1 Occupancy through Dynamic Chromatin Transitions.
Erin E Swinstead, Tina B Miranda, Ville Paakinaho, Songjoon Baek, Ido Goldstein, Mary Hawkins, Tatiana S Karpova, David Ball, Davide Mazza, Luke D Lavis,[...]. Cell 2016
156
18

Super-enhancers in the control of cell identity and disease.
Denes Hnisz, Brian J Abraham, Tong Ihn Lee, Ashley Lau, Violaine Saint-André, Alla A Sigova, Heather A Hoke, Richard A Young. Cell 2013
18

Imaging dynamic and selective low-complexity domain interactions that control gene transcription.
Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq,[...]. Science 2018
334
18

Single-molecule imaging of transcription factor binding to DNA in live mammalian cells.
J Christof M Gebhardt, David M Suter, Rahul Roy, Ziqing W Zhao, Alec R Chapman, Srinjan Basu, Tom Maniatis, X Sunney Xie. Nat Methods 2013
276
18

A benchmark for chromatin binding measurements in live cells.
Davide Mazza, Alice Abernathy, Nicole Golob, Tatsuya Morisaki, James G McNally. Nucleic Acids Res 2012
164
18

Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus.
Ignacio Izeddin, Vincent Récamier, Lana Bosanac, Ibrahim I Cissé, Lydia Boudarene, Claire Dugast-Darzacq, Florence Proux, Olivier Bénichou, Raphaël Voituriez, Olivier Bensaude,[...]. Elife 2014
160
18

CTCF and cohesin regulate chromatin loop stability with distinct dynamics.
Anders S Hansen, Iryna Pustova, Claudia Cattoglio, Robert Tjian, Xavier Darzacq. Elife 2017
221
18

Single-molecule imaging of the transcription factor SRF reveals prolonged chromatin-binding kinetics upon cell stimulation.
Lisa Hipp, Judith Beer, Oliver Kuchler, Matthias Reisser, Daniela Sinske, Jens Michaelis, J Christof M Gebhardt, Bernd Knöll. Proc Natl Acad Sci U S A 2019
27
18

Highly inclined thin illumination enables clear single-molecule imaging in cells.
Makio Tokunaga, Naoko Imamoto, Kumiko Sakata-Sogawa. Nat Methods 2008
626
18

Lineage-Restricted Regulation of SCD and Fatty Acid Saturation by MITF Controls Melanoma Phenotypic Plasticity.
Yurena Vivas-García, Paola Falletta, Jana Liebing, Pakavarin Louphrasitthiphol, Yongmei Feng, Jagat Chauhan, David A Scott, Nicole Glodde, Ana Chocarro-Calvo, Sarah Bonham,[...]. Mol Cell 2020
29
18

Translation reprogramming is an evolutionarily conserved driver of phenotypic plasticity and therapeutic resistance in melanoma.
Paola Falletta, Luis Sanchez-Del-Campo, Jagat Chauhan, Maike Effern, Amy Kenyon, Christopher J Kershaw, Robert Siddaway, Richard Lisle, Rasmus Freter, Matthew J Daniels,[...]. Genes Dev 2017
122
18

Activated STAT1 transcription factors conduct distinct saltatory movements in the cell nucleus.
Jasmin Speil, Eugen Baumgart, Jan-Peter Siebrasse, Roman Veith, Uwe Vinkemeier, Ulrich Kubitscheck. Biophys J 2011
44
18

Robust model-based analysis of single-particle tracking experiments with Spot-On.
Anders S Hansen, Maxime Woringer, Jonathan B Grimm, Luke D Lavis, Robert Tjian, Xavier Darzacq. Elife 2018
64
18

A general method to improve fluorophores for live-cell and single-molecule microscopy.
Jonathan B Grimm, Brian P English, Jiji Chen, Joel P Slaughter, Zhengjian Zhang, Andrey Revyakin, Ronak Patel, John J Macklin, Davide Normanno, Robert H Singer,[...]. Nat Methods 2015
601
18

Live-cell p53 single-molecule binding is modulated by C-terminal acetylation and correlates with transcriptional activity.
Alessia Loffreda, Emanuela Jacchetti, Sofia Antunes, Paolo Rainone, Tiziana Daniele, Tatsuya Morisaki, Marco E Bianchi, Carlo Tacchetti, Davide Mazza. Nat Commun 2017
49
18

Tietz syndrome (hypopigmentation/deafness) caused by mutation of MITF.
S D Smith, P M Kelley, J B Kenyon, D Hoover. J Med Genet 2000
92
12

Mitf-D, a newly identified isoform, expressed in the retinal pigment epithelium and monocyte-lineage cells affected by Mitf mutations.
Kazuhisa Takeda, Ken ichi Yasumoto, Naoko Kawaguchi, Tetsuo Udono, Ken ichi Watanabe, Hideo Saito, Kazuhiro Takahashi, Masaki Noda, Shigeki Shibahara. Biochim Biophys Acta 2002
66
12

Primary renal neoplasms with the ASPL-TFE3 gene fusion of alveolar soft part sarcoma: a distinctive tumor entity previously included among renal cell carcinomas of children and adolescents.
P Argani, C R Antonescu, P B Illei, M Y Lui, C F Timmons, R Newbury, V E Reuter, A J Garvin, A R Perez-Atayde, J A Fletcher,[...]. Am J Pathol 2001
415
12

A gene network regulating lysosomal biogenesis and function.
Marco Sardiello, Michela Palmieri, Alberto di Ronza, Diego Luis Medina, Marta Valenza, Vincenzo Alessandro Gennarino, Chiara Di Malta, Francesca Donaudy, Valerio Embrione, Roman S Polishchuk,[...]. Science 2009
12

Restricted leucine zipper dimerization and specificity of DNA recognition of the melanocyte master regulator MITF.
Vivian Pogenberg, Margrét H Ogmundsdóttir, Kristín Bergsteinsdóttir, Alexander Schepsky, Bengt Phung, Viktor Deineko, Morlin Milewski, Eiríkur Steingrímsson, Matthias Wilmanns. Genes Dev 2012
68
12

The nutrient-responsive transcription factor TFE3 promotes autophagy, lysosomal biogenesis, and clearance of cellular debris.
José A Martina, Heba I Diab, Li Lishu, Lim Jeong-A, Simona Patange, Nina Raben, Rosa Puertollano. Sci Signal 2014
316
12

Mechanism of conditional partner selectivity in MITF/TFE family transcription factors with a conserved coiled coil stammer motif.
Vivian Pogenberg, Josué Ballesteros-Álvarez, Romana Schober, Ingibjörg Sigvaldadóttir, Agnieszka Obarska-Kosinska, Morlin Milewski, Rainer Schindl, Margrét Helga Ögmundsdóttir, Eiríkur Steingrímsson, Matthias Wilmanns. Nucleic Acids Res 2020
7
28


Biallelic Mutations in MITF Cause Coloboma, Osteopetrosis, Microphthalmia, Macrocephaly, Albinism, and Deafness.
Aman George, Dina J Zand, Robert B Hufnagel, Ruchi Sharma, Yuri V Sergeev, Janet M Legare, Gregory M Rice, Jessica A Scott Schwoerer, Mariana Rius, Laura Tetri,[...]. Am J Hum Genet 2016
43
12

microphthalmia, a critical factor in melanocyte development, defines a discrete transcription factor family.
T J Hemesath, E Steingrímsson, G McGill, M J Hansen, J Vaught, C A Hodgkinson, H Arnheiter, N G Copeland, N A Jenkins, D E Fisher. Genes Dev 1994
507
12

A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB.
Carmine Settembre, Roberto Zoncu, Diego L Medina, Francesco Vetrini, Serkan Erdin, SerpilUckac Erdin, Tuong Huynh, Mathieu Ferron, Gerard Karsenty, Michel C Vellard,[...]. EMBO J 2012
12


Subcellular localization and stability of MITF are modulated by the bHLH-Zip domain.
Valerie Fock, Sigurdur Runar Gudmundsson, Hilmar Orn Gunnlaugsson, Jon August Stefansson, Vivien Ionasz, Alexander Schepsky, Jade Viarigi, Indridi Einar Reynisson, Vivian Pogenberg, Matthias Wilmanns,[...]. Pigment Cell Melanoma Res 2019
15
13

Transcriptional control of autophagy-lysosome function drives pancreatic cancer metabolism.
Rushika M Perera, Svetlana Stoykova, Brandon N Nicolay, Kenneth N Ross, Julien Fitamant, Myriam Boukhali, Justine Lengrand, Vikram Deshpande, Martin K Selig, Cristina R Ferrone,[...]. Nature 2015
430
12

The transcription factor TFEB links mTORC1 signaling to transcriptional control of lysosome homeostasis.
Agnes Roczniak-Ferguson, Constance S Petit, Florian Froehlich, Sharon Qian, Jennifer Ky, Brittany Angarola, Tobias C Walther, Shawn M Ferguson. Sci Signal 2012
696
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.