A citation-based method for searching scientific literature

Michela Rossini, Paola Pizzo, Riccardo Filadi. FEBS J 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Comparative Analysis of Mitochondrial N-Termini from Mouse, Human, and Yeast.
Sarah E Calvo, Olivier Julien, Karl R Clauser, Hongying Shen, Kimberli J Kamer, James A Wells, Vamsi K Mootha. Mol Cell Proteomics 2017
35
100

The genome sequence of Rickettsia prowazekii and the origin of mitochondria.
S G Andersson, A Zomorodipour, J O Andersson, T Sicheritz-Pontén, U C Alsmark, R M Podowski, A K Näslund, A S Eriksson, H H Winkler, C G Kurland. Nature 1998
100

The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for coexisting respiratory supercomplexes.
Fan Liu, Philip Lössl, Beverley M Rabbitts, Robert S Balaban, Albert J R Heck. Mol Cell Proteomics 2018
76
100

mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.
Annie Yim, Prasanna Koti, Adrien Bonnard, Fabio Marchiano, Milena Dürrbaum, Cecilia Garcia-Perez, Jose Villaveces, Salma Gamal, Giovanni Cardone, Fabiana Perocchi,[...]. Nucleic Acids Res 2020
15
100

MICU1 encodes a mitochondrial EF hand protein required for Ca(2+) uptake.
Fabiana Perocchi, Vishal M Gohil, Hany S Girgis, X Robert Bao, Janet E McCombs, Amy E Palmer, Vamsi K Mootha. Nature 2010
580
100

Exploring the HeLa Dark Mitochondrial Proteome.
Federica Marini, Victor Corasolla Carregari, Viviana Greco, Maurizio Ronci, Federica Iavarone, Silvia Persichilli, Massimo Castagnola, Andrea Urbani, Luisa Pieroni. Front Cell Dev Biol 2020
9
100

Omics Integration for Mitochondria Systems Biology.
Xin Hu, Young-Mi Go, Dean P Jones. Antioxid Redox Signal 2020
9
100

CORUM: the comprehensive resource of mammalian protein complexes-2019.
Madalina Giurgiu, Julian Reinhard, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Andreas Ruepp. Nucleic Acids Res 2019
180
100

Assessing systems properties of yeast mitochondria through an interaction map of the organelle.
Fabiana Perocchi, Lars J Jensen, Julien Gagneur, Uwe Ahting, Christian von Mering, Peer Bork, Holger Prokisch, Lars M Steinmetz. PLoS Genet 2006
59
100


LocTree3 prediction of localization.
Tatyana Goldberg, Maximilian Hecht, Tobias Hamp, Timothy Karl, Guy Yachdav, Nadeem Ahmed, Uwe Altermann, Philipp Angerer, Sonja Ansorge, Kinga Balasz,[...]. Nucleic Acids Res 2014
148
100

Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.
Hyun-Woo Rhee, Peng Zou, Namrata D Udeshi, Jeffrey D Martell, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Science 2013
613
100

Complexome profiling identifies TMEM126B as a component of the mitochondrial complex I assembly complex.
Heinrich Heide, Lea Bleier, Mirco Steger, Jörg Ackermann, Stefan Dröse, Bettina Schwamb, Martin Zörnig, Andreas S Reichert, Ina Koch, Ilka Wittig,[...]. Cell Metab 2012
183
100

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
100

Integrative analysis of the mitochondrial proteome in yeast.
Holger Prokisch, Curt Scharfe, David G Camp, Wenzhong Xiao, Lior David, Christophe Andreoli, Matthew E Monroe, Ronald J Moore, Marina A Gritsenko, Christian Kozany,[...]. PLoS Biol 2004
161
100

Isolation of Functional Mitochondria from Cultured Cells and Mouse Tissues.
Jennifer Wettmarshausen, Fabiana Perocchi. Methods Mol Biol 2017
14
100


Importing mitochondrial proteins: machineries and mechanisms.
Agnieszka Chacinska, Carla M Koehler, Dusanka Milenkovic, Trevor Lithgow, Nikolaus Pfanner. Cell 2009
879
100

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences.
Ian Small, Nemo Peeters, Fabrice Legeai, Claire Lurin. Proteomics 2004
637
100

Proteomics. Tissue-based map of the human proteome.
Mathias Uhlén, Linn Fagerberg, Björn M Hallström, Cecilia Lindskog, Per Oksvold, Adil Mardinoglu, Åsa Sivertsson, Caroline Kampf, Evelina Sjöstedt, Anna Asplund,[...]. Science 2015
100

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins.
Sarah E Calvo, Karl R Clauser, Vamsi K Mootha. Nucleic Acids Res 2016
752
100



Mechanism of adrenergic CaV1.2 stimulation revealed by proximity proteomics.
Guoxia Liu, Arianne Papa, Alexander N Katchman, Sergey I Zakharov, Daniel Roybal, Jessica A Hennessey, Jared Kushner, Lin Yang, Bi-Xing Chen, Alexander Kushnir,[...]. Nature 2020
59
100

The effect of ruthenium red on Ca 2+ transport and respiration in rat liver mitochondria.
F D Vasington, P Gazzotti, R Tiozzo, E Carafoli. Biochim Biophys Acta 1972
296
100


Proteomic analysis of the mouse liver mitochondrial inner membrane.
Sandrine Da Cruz, Ioannis Xenarios, James Langridge, Francis Vilbois, Phillipe A Parone, Jean-Claude Martinou. J Biol Chem 2003
193
100

The Origin and Diversification of Mitochondria.
Andrew J Roger, Sergio A Muñoz-Gómez, Ryoma Kamikawa. Curr Biol 2017
271
100

DeepLoc: prediction of protein subcellular localization using deep learning.
José Juan Almagro Armenteros, Casper Kaae Sønderby, Søren Kaae Sønderby, Henrik Nielsen, Ole Winther. Bioinformatics 2017
328
100

TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins.
Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio. Bioinformatics 2015
22
100

The mitochondrial calcium uniporter is a highly selective ion channel.
Yuriy Kirichok, Grigory Krapivinsky, David E Clapham. Nature 2004
934
100

DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks.
Castrense Savojardo, Niccolò Bruciaferri, Giacomo Tartari, Pier Luigi Martelli, Rita Casadio. Bioinformatics 2020
19
100

ngLOC: software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes.
Brian R King, Suleyman Vural, Sanjit Pandey, Alex Barteau, Chittibabu Guda. BMC Res Notes 2012
26
100

Mitochondrial medicine in the omics era.
Joyeeta Rahman, Shamima Rahman. Lancet 2018
98
100

Split-TurboID enables contact-dependent proximity labeling in cells.
Kelvin F Cho, Tess C Branon, Sanjana Rajeev, Tanya Svinkina, Namrata D Udeshi, Themis Thoudam, Chulhwan Kwak, Hyun-Woo Rhee, In-Kyu Lee, Steven A Carr,[...]. Proc Natl Acad Sci U S A 2020
59
100

MitoFates: improved prediction of mitochondrial targeting sequences and their cleavage sites.
Yoshinori Fukasawa, Junko Tsuji, Szu-Chin Fu, Kentaro Tomii, Paul Horton, Kenichiro Imai. Mol Cell Proteomics 2015
245
100

Proteomic mapping of the human mitochondrial intermembrane space in live cells via ratiometric APEX tagging.
Victoria Hung, Peng Zou, Hyun-Woo Rhee, Namrata D Udeshi, Valentin Cracan, Tanya Svinkina, Steven A Carr, Vamsi K Mootha, Alice Y Ting. Mol Cell 2014
254
100

Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy.
Jeffrey D Martell, Thomas J Deerinck, Yasemin Sancak, Thomas L Poulos, Vamsi K Mootha, Gina E Sosinsky, Mark H Ellisman, Alice Y Ting. Nat Biotechnol 2012
374
100

A pathway coordinated by DELE1 relays mitochondrial stress to the cytosol.
Evelyn Fessler, Eva-Maria Eckl, Sabine Schmitt, Igor Alves Mancilla, Matthias F Meyer-Bender, Monika Hanf, Julia Philippou-Massier, Stefan Krebs, Hans Zischka, Lucas T Jae. Nature 2020
75
100

Systems Biochemistry Approaches to Defining Mitochondrial Protein Function.
Andrew Y Sung, Brendan J Floyd, David J Pagliarini. Cell Metab 2020
3
100



Connection of Protein Transport and Organelle Contact Sites in Mitochondria.
Lars Ellenrieder, Heike Rampelt, Thomas Becker. J Mol Biol 2017
21
100

Characterization of the human heart mitochondrial proteome.
Steven W Taylor, Eoin Fahy, Bing Zhang, Gary M Glenn, Dale E Warnock, Sandra Wiley, Anne N Murphy, Sara P Gaucher, Roderick A Capaldi, Bradford W Gibson,[...]. Nat Biotechnol 2003
540
100

Online Parallel Accumulation-Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer.
Florian Meier, Andreas-David Brunner, Scarlet Koch, Heiner Koch, Markus Lubeck, Michael Krause, Niels Goedecke, Jens Decker, Thomas Kosinski, Melvin A Park,[...]. Mol Cell Proteomics 2018
192
100

MITO-Tag Mice enable rapid isolation and multimodal profiling of mitochondria from specific cell types in vivo.
Erol C Bayraktar, Lou Baudrier, Ceren Özerdem, Caroline A Lewis, Sze Ham Chan, Tenzin Kunchok, Monther Abu-Remaileh, Andrew L Cangelosi, David M Sabatini, Kıvanç Birsoy,[...]. Proc Natl Acad Sci U S A 2019
35
100

Prediction of protein subcellular localization.
Chin-Sheng Yu, Yu-Ching Chen, Chih-Hao Lu, Jenn-Kang Hwang. Proteins 2006
745
100


Integrative genomics identifies MCU as an essential component of the mitochondrial calcium uniporter.
Joshua M Baughman, Fabiana Perocchi, Hany S Girgis, Molly Plovanich, Casey A Belcher-Timme, Yasemin Sancak, X Robert Bao, Laura Strittmatter, Olga Goldberger, Roman L Bogorad,[...]. Nature 2011
100

N-terminome analysis of the human mitochondrial proteome.
Alvaro Sebastian Vaca Jacome, Thierry Rabilloud, Christine Schaeffer-Reiss, Magali Rompais, Daniel Ayoub, Lydie Lane, Amos Bairoch, Alain Van Dorsselaer, Christine Carapito. Proteomics 2015
42
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.