A citation-based method for searching scientific literature

Wenjun Yan, Yi-Rong Peng, Tavé van Zyl, Aviv Regev, Karthik Shekhar, Dejan Juric, Joshua R Sanes. Sci Rep 2020
Times Cited: 57







List of co-cited articles
553 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina.
Yi-Rong Peng, Karthik Shekhar, Wenjun Yan, Dustin Herrmann, Anna Sappington, Gregory S Bryman, Tavé van Zyl, Michael Tri H Do, Aviv Regev, Joshua R Sanes. Cell 2019
158
54

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
527
28

Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes.
Bruce A Rheaume, Amyeo Jereen, Mohan Bolisetty, Muhammad S Sajid, Yue Yang, Kathleen Renna, Lili Sun, Paul Robson, Ephraim F Trakhtenberg. Nat Commun 2018
173
26

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Madhvi Menon, Shahin Mohammadi, Jose Davila-Velderrain, Brittany A Goods, Tanina D Cadwell, Yu Xing, Anat Stemmer-Rachamimov, Alex K Shalek, John Christopher Love, Manolis Kellis,[...]. Nat Commun 2019
96
26

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes.
Nicholas M Tran, Karthik Shekhar, Irene E Whitney, Anne Jacobi, Inbal Benhar, Guosong Hong, Wenjun Yan, Xian Adiconis, McKinzie E Arnold, Jung Min Lee,[...]. Neuron 2019
151
26

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution.
Cameron S Cowan, Magdalena Renner, Martina De Gennaro, Brigitte Gross-Scherf, David Goldblum, Yanyan Hou, Martin Munz, Tiago M Rodrigues, Jacek Krol, Tamas Szikra,[...]. Cell 2020
116
26

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
22

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
150
21

A single-cell transcriptome atlas of the adult human retina.
Samuel W Lukowski, Camden Y Lo, Alexei A Sharov, Quan Nguyen, Lyujie Fang, Sandy Sc Hung, Ling Zhu, Ting Zhang, Ulrike Grünert, Tu Nguyen,[...]. EMBO J 2019
83
21

Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.
Yufeng Lu, Fion Shiau, Wenyang Yi, Suying Lu, Qian Wu, Joel D Pearson, Alyssa Kallman, Suijuan Zhong, Thanh Hoang, Zhentao Zuo,[...]. Dev Cell 2020
59
19

Topography of ganglion cells in human retina.
C A Curcio, K A Allen. J Comp Neurol 1990
17

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
17


Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling.
Qingnan Liang, Rachayata Dharmat, Leah Owen, Akbar Shakoor, Yumei Li, Sangbae Kim, Albert Vitale, Ivana Kim, Denise Morgan, Shaoheng Liang,[...]. Nat Commun 2019
46
21

Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures.
Akshayalakshmi Sridhar, Akina Hoshino, Connor R Finkbeiner, Alex Chitsazan, Li Dai, Alexandra K Haugan, Kayla M Eschenbacher, Dana L Jackson, Cole Trapnell, Olivia Bermingham-McDonogh,[...]. Cell Rep 2020
71
15

The functional diversity of retinal ganglion cells in the mouse.
Tom Baden, Philipp Berens, Katrin Franke, Miroslav Román Rosón, Matthias Bethge, Thomas Euler. Nature 2016
431
15

Human photoreceptor topography.
C A Curcio, K R Sloan, R E Kalina, A E Hendrickson. J Comp Neurol 1990
14

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
14

Dissecting the transcriptome landscape of the human fetal neural retina and retinal pigment epithelium by single-cell RNA-seq analysis.
Yuqiong Hu, Xiaoye Wang, Boqiang Hu, Yunuo Mao, Yidong Chen, Liying Yan, Jun Yong, Ji Dong, Yuan Wei, Wei Wang,[...]. PLoS Biol 2019
49
16

Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration.
Luz D Orozco, Hsu-Hsin Chen, Christian Cox, Kenneth J Katschke, Rommel Arceo, Carmina Espiritu, Patrick Caplazi, Sarajane Saturnio Nghiem, Ying-Jiun Chen, Zora Modrusan,[...]. Cell Rep 2020
56
14

Mouse Retinal Cell Atlas: Molecular Identification of over Sixty Amacrine Cell Types.
Wenjun Yan, Mallory A Laboulaye, Nicholas M Tran, Irene E Whitney, Inbal Benhar, Joshua R Sanes. J Neurosci 2020
62
14

Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration.
Andrew P Voigt, Kelly Mulfaul, Nathaniel K Mullin, Miles J Flamme-Wiese, Joseph C Giacalone, Edwin M Stone, Budd A Tucker, Todd E Scheetz, Robert F Mullins. Proc Natl Acad Sci U S A 2019
83
14

Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.
A P Voigt, S S Whitmore, M J Flamme-Wiese, M J Riker, L A Wiley, B A Tucker, E M Stone, R F Mullins, T E Scheetz. Exp Eye Res 2019
50
16

A cell atlas of the chick retina based on single-cell transcriptomics.
Masahito Yamagata, Wenjun Yan, Joshua R Sanes. Elife 2021
24
33

Fireworks in the primate retina: in vitro photodynamics reveals diverse LGN-projecting ganglion cell types.
Dennis M Dacey, Beth B Peterson, Farrel R Robinson, Paul D Gamlin. Neuron 2003
216
14

Survey of retinal ganglion cell morphology in marmoset.
Rania A Masri, Kumiko A Percival, Amane Koizumi, Paul R Martin, Ulrike Grünert. J Comp Neurol 2019
29
27

Broad thorny ganglion cells: a candidate for visual pursuit error signaling in the primate retina.
Christian Puller, Michael B Manookin, Jay Neitz, Fred Rieke, Maureen Neitz. J Neurosci 2015
32
25


Y-cell receptive field and collicular projection of parasol ganglion cells in macaque monkey retina.
Joanna D Crook, Beth B Peterson, Orin S Packer, Farrel R Robinson, John B Troy, Dennis M Dacey. J Neurosci 2008
96
12

Cell types and cell circuits in human and non-human primate retina.
Ulrike Grünert, Paul R Martin. Prog Retin Eye Res 2020
36
19

Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids.
Sangbae Kim, Albert Lowe, Rachayata Dharmat, Seunghoon Lee, Leah A Owen, Jun Wang, Akbar Shakoor, Yumei Li, Denise J Morgan, Andre A Hejazi,[...]. Proc Natl Acad Sci U S A 2019
59
12

The neuronal organization of the retina.
Richard H Masland. Neuron 2012
470
12


Analysis of Parvocellular and Magnocellular Visual Pathways in Human Retina.
Rania A Masri, Ulrike Grünert, Paul R Martin. J Neurosci 2020
16
43

Melanopsin-expressing ganglion cells on macaque and human retinas form two morphologically distinct populations.
Hsi-Wen Liao, Xiaozhi Ren, Beth B Peterson, David W Marshak, King-Wai Yau, Paul D Gamlin, Dennis M Dacey. J Comp Neurol 2016
83
12


Melanopsin-expressing ganglion cells in primate retina signal colour and irradiance and project to the LGN.
Dennis M Dacey, Hsi-Wen Liao, Beth B Peterson, Farrel R Robinson, Vivianne C Smith, Joel Pokorny, King-Wai Yau, Paul D Gamlin. Nature 2005
796
12

Wide-field ganglion cells in macaque retinas.
Elizabeth S Yamada, Andrea S Bordt, David W Marshak. Vis Neurosci 2005
55
12

The primate fovea: Structure, function and development.
Andreas Bringmann, Steffen Syrbe, Katja Görner, Johannes Kacza, Mike Francke, Peter Wiedemann, Andreas Reichenbach. Prog Retin Eye Res 2018
106
10

Retinal connectivity and primate vision.
Barry B Lee, Paul R Martin, Ulrike Grünert. Prog Retin Eye Res 2010
90
10

Neurons of the human retina: a Golgi study.
H Kolb, K A Linberg, S K Fisher. J Comp Neurol 1992
239
10


Cellular and Circuit Mechanisms Shaping the Perceptual Properties of the Primate Fovea.
Raunak Sinha, Mrinalini Hoon, Jacob Baudin, Haruhisa Okawa, Rachel O L Wong, Fred Rieke. Cell 2017
77
10

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
10

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
10

Efficient Coding by Midget and Parasol Ganglion Cells in the Human Retina.
Florentina Soto, Jen-Chun Hsiang, Rithwick Rajagopal, Kisha Piggott, George J Harocopos, Steven M Couch, Philip Custer, Josh L Morgan, Daniel Kerschensteiner. Neuron 2020
15
40

Current best practices in single-cell RNA-seq analysis: a tutorial.
Malte D Luecken, Fabian J Theis. Mol Syst Biol 2019
440
10

Cell fate determination in the vertebrate retina.
C L Cepko, C P Austin, X Yang, M Alexiades, D Ezzeddine. Proc Natl Acad Sci U S A 1996
768
10


Molecular Fingerprinting of On-Off Direction-Selective Retinal Ganglion Cells Across Species and Relevance to Primate Visual Circuits.
Onkar S Dhande, Benjamin K Stafford, Katrin Franke, Rana El-Danaf, Kumiko A Percival, Ann H Phan, Peichao Li, Bryan J Hansen, Phong L Nguyen, Philipp Berens,[...]. J Neurosci 2019
24
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.