A citation-based method for searching scientific literature

Ana Paula Santos, Valérie Gaudin, Iva Mozgová, Frédéric Pontvianne, Daniel Schubert, Ahmet L Tek, Martina Dvořáčková, Chang Liu, Paul Fransz, Stefanie Rosa, Sara Farrona. J Exp Bot 2020
Times Cited: 12







List of co-cited articles
94 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Plant lamin-like proteins mediate chromatin tethering at the nuclear periphery.
Bo Hu, Nan Wang, Xiuli Bi, Ezgi Süheyla Karaaslan, Anna-Lena Weber, Wangsheng Zhu, Kenneth Wayne Berendzen, Chang Liu. Genome Biol 2019
49
41

Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery.
Xiuli Bi, Ying-Juan Cheng, Bo Hu, Xiaoli Ma, Rui Wu, Jia-Wei Wang, Chang Liu. Genome Res 2017
68
41


Chromatin domains in space and their functional implications.
Frédéric Pontvianne, Chang Liu. Curr Opin Plant Biol 2020
19
33

Three-dimensional nuclear organization in Arabidopsis thaliana.
Frédéric Pontvianne, Stefan Grob. J Plant Res 2020
12
33

Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome.
Frédéric Pontvianne, Marie-Christine Carpentier, Nathalie Durut, Veronika Pavlištová, Karin Jaške, Šárka Schořová, Hugues Parrinello, Marine Rohmer, Craig S Pikaard, Miloslava Fojtová,[...]. Cell Rep 2016
84
33


3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments.
Pengfei Dong, Xiaoyu Tu, Po-Yu Chu, Peitao Lü, Ning Zhu, Donald Grierson, Baijuan Du, Pinghua Li, Silin Zhong. Mol Plant 2017
139
33

Active and repressed biosynthetic gene clusters have spatially distinct chromosome states.
Hans-Wilhelm Nützmann, Daniel Doerr, América Ramírez-Colmenero, Jesús Emiliano Sotelo-Fonseca, Eva Wegel, Marco Di Stefano, Steven W Wingett, Peter Fraser, Laurence Hurst, Selene L Fernandez-Valverde,[...]. Proc Natl Acad Sci U S A 2020
38
33

Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate.
Paul Fransz, J Hans De Jong, Martin Lysak, Monica Ruffini Castiglione, Ingo Schubert. Proc Natl Acad Sci U S A 2002
323
33

Plant and animal chromatin three-dimensional organization: similar structures but different functions.
Pengfei Dong, Xiaoyu Tu, Zizheng Liang, Byung-Ho Kang, Silin Zhong. J Exp Bot 2020
20
25

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
25

Organization and function of the 3D genome.
Boyan Bonev, Giacomo Cavalli. Nat Rev Genet 2016
450
25

Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure.
Ezgi Süheyla Karaaslan, Nan Wang, Natalie Faiß, Yuyu Liang, Sean A Montgomery, Sascha Laubinger, Kenneth Wayne Berendzen, Frédéric Berger, Holger Breuninger, Chang Liu. Nat Plants 2020
28
25

Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin.
Sean A Montgomery, Yasuhiro Tanizawa, Bence Galik, Nan Wang, Tasuku Ito, Takako Mochizuki, Svetlana Akimcheva, John L Bowman, Valérie Cognat, Laurence Maréchal-Drouard,[...]. Curr Biol 2020
79
25

Light-regulated gene repositioning in Arabidopsis.
Chun-Miao Feng, Yongjian Qiu, Elise K Van Buskirk, Emily J Yang, Meng Chen. Nat Commun 2014
62
25


Three-dimensional chromatin packing and positioning of plant genomes.
Ezgi Süheyla Doğan, Chang Liu. Nat Plants 2018
59
25

Wheat chromatin architecture is organized in genome territories and transcription factories.
Lorenzo Concia, Alaguraj Veluchamy, Juan S Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Severine Domenichini, Natalia Y Rodriguez Granados, Soonkap Kim, Thomas Blein,[...]. Genome Biol 2020
54
25

Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.
Franziska Turck, François Roudier, Sara Farrona, Marie-Laure Martin-Magniette, Elodie Guillaume, Nicolas Buisine, Séverine Gagnot, Robert A Martienssen, George Coupland, Vincent Colot. PLoS Genet 2007
412
25

Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop.
Federico Ariel, Teddy Jegu, David Latrasse, Natali Romero-Barrios, Aurélie Christ, Moussa Benhamed, Martin Crespi. Mol Cell 2014
216
25

Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions.
Tao Dumur, Susan Duncan, Katja Graumann, Sophie Desset, Ricardo S Randall, Ortrun Mittelsten Scheid, Dimiter Prodanov, Christophe Tatout, Célia Baroux. Nucleus 2019
22
25

The matrix revolutions: towards the decoding of the plant chromatin three-dimensional reality.
Ying Huang, Natalia Yaneth Rodriguez-Granados, David Latrasse, Cecile Raynaud, Moussa Benhamed, Juan Sebastian Ramirez-Prado. J Exp Bot 2020
8
25

Chromatin dynamics during interphase and cell division: similarities and differences between model and crop plants.
Ales Pecinka, Christian Chevalier, Isabelle Colas, Kriton Kalantidis, Serena Varotto, Tamar Krugman, Christos Michailidis, María-Pilar Vallés, Aitor Muñoz, Mónica Pradillo. J Exp Bot 2020
19
16

Fluorescence-Activated Nucleolus Sorting in Arabidopsis.
Frédéric Pontvianne, Myriam Boyer-Clavel, Julio Sáez-Vásquez. Methods Mol Biol 2016
10
20

High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli.
Silvana van Koningsbruggen, Marek Gierlinski, Pietá Schofield, David Martin, Geoffey J Barton, Yavuz Ariyurek, Johan T den Dunnen, Angus I Lamond. Mol Biol Cell 2010
206
16

Chromosome-specific NOR inactivation explains selective rRNA gene silencing and dosage control in Arabidopsis.
Chinmayi Chandrasekhara, Gireesha Mohannath, Todd Blevins, Frederic Pontvianne, Craig S Pikaard. Genes Dev 2016
65
16

Nucleolus-associated chromatin domains are maintained under heat stress, despite nucleolar reorganization in Arabidopsis thaliana.
Ariadna Picart-Picolo, Claire Picart, Nathalie Picault, Frederic Pontvianne. J Plant Res 2020
10
20

Genome Organization in and around the Nucleolus.
Cristiana Bersaglieri, Raffaella Santoro. Cells 2019
58
16

Chromatin assembly factor CAF-1 is required for cellular differentiation during plant development.
Vivien Exner, Patti Taranto, Nicole Schönrock, Wilhelm Gruissem, Lars Hennig. Development 2006
89
16

Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis.
Frédéric Pontvianne, Todd Blevins, Chinmayi Chandrasekhara, Wei Feng, Hume Stroud, Steven E Jacobsen, Scott D Michaels, Craig S Pikaard. Genes Dev 2012
56
16


Advancing knowledge of the plant nuclear periphery and its application for crop science.
David E Evans, Sarah Mermet, Christophe Tatout. Nucleus 2020
6
33

Principles of genome folding into topologically associating domains.
Quentin Szabo, Frédéric Bantignies, Giacomo Cavalli. Sci Adv 2019
225
16

Subnuclear gene positioning through lamina association affects copper tolerance.
Yuki Sakamoto, Mayuko Sato, Yoshikatsu Sato, Akihito Harada, Takamasa Suzuki, Chieko Goto, Kentaro Tamura, Kiminori Toyooka, Hiroshi Kimura, Yasuyuki Ohkawa,[...]. Nat Commun 2020
15
16

Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes.
Ales Pecinka, Veit Schubert, Armin Meister, Gregor Kreth, Marco Klatte, Martin A Lysak, Jörg Fuchs, Ingo Schubert. Chromosoma 2004
167
16


Regulation of single-cell genome organization into TADs and chromatin nanodomains.
Quentin Szabo, Axelle Donjon, Ivana Jerković, Giorgio L Papadopoulos, Thierry Cheutin, Boyan Bonev, Elphège P Nora, Benoit G Bruneau, Frédéric Bantignies, Giacomo Cavalli. Nat Genet 2020
65
16

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
16

Recruitment to the nuclear periphery can alter expression of genes in human cells.
Lee E Finlan, Duncan Sproul, Inga Thomson, Shelagh Boyle, Elizabeth Kerr, Paul Perry, Bauke Ylstra, Jonathan R Chubb, Wendy A Bickmore. PLoS Genet 2008
405
16

Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis.
Kinga Rutowicz, Maciej Lirski, Benoît Mermaz, Gianluca Teano, Jasmin Schubert, Imen Mestiri, Magdalena A Kroteń, Tohnyui Ndinyanka Fabrice, Simon Fritz, Stefan Grob,[...]. Genome Biol 2019
37
16

Meeting report - INDEPTH kick-off meeting.
Geraint Parry, Aline V Probst, Célia Baroux, Christophe Tatout. J Cell Sci 2018
5
40

Marker gene tethering by nucleoporins affects gene expression in plants.
Sarah Smith, Carla Galinha, Sophie Desset, Frances Tolmie, David Evans, Christophe Tatout, Katja Graumann. Nucleus 2015
22
16

Heterochromatin drives compartmentalization of inverted and conventional nuclei.
Martin Falk, Yana Feodorova, Natalia Naumova, Maxim Imakaev, Bryan R Lajoie, Heinrich Leonhardt, Boris Joffe, Job Dekker, Geoffrey Fudenberg, Irina Solovei,[...]. Nature 2019
239
16

Automated 3D bio-imaging analysis of nuclear organization by NucleusJ 2.0.
Tristan Dubos, Axel Poulet, Céline Gonthier-Gueret, Guillaume Mougeot, Emmanuel Vanrobays, Yanru Li, Sylvie Tutois, Emilie Pery, Frédéric Chausse, Aline V Probst,[...]. Nucleus 2020
11
18

Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery.
Benjamin D Towbin, Cristina González-Aguilera, Ragna Sack, Dimos Gaidatzis, Véronique Kalck, Peter Meister, Peter Askjaer, Susan M Gasser. Cell 2012
377
16

Advances in Chromatin Imaging at Kilobase-Scale Resolution.
Alistair Boettiger, Sedona Murphy. Trends Genet 2020
55
16

Lamina-associated domains: peripheral matters and internal affairs.
Nolwenn Briand, Philippe Collas. Genome Biol 2020
71
16


The Novel Nuclear Envelope Protein KAKU4 Modulates Nuclear Morphology in Arabidopsis.
Chieko Goto, Kentaro Tamura, Yoichiro Fukao, Tomoo Shimada, Ikuko Hara-Nishimura. Plant Cell 2014
59
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.