A citation-based method for searching scientific literature

Ana Paula Santos, Valérie Gaudin, Iva Mozgová, Frédéric Pontvianne, Daniel Schubert, Ahmet L Tek, Martina Dvořáčková, Chang Liu, Paul Fransz, Stefanie Rosa, Sara Farrona. J Exp Bot 2020
Times Cited: 6







List of co-cited articles
35 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Plant and animal chromatin three-dimensional organization: similar structures but different functions.
Pengfei Dong, Xiaoyu Tu, Zizheng Liang, Byung-Ho Kang, Silin Zhong. J Exp Bot 2020
8
50


Three-dimensional nuclear organization in Arabidopsis thaliana.
Frédéric Pontvianne, Stefan Grob. J Plant Res 2020
6
50

Plant lamin-like proteins mediate chromatin tethering at the nuclear periphery.
Bo Hu, Nan Wang, Xiuli Bi, Ezgi Süheyla Karaaslan, Anna-Lena Weber, Wangsheng Zhu, Kenneth Wayne Berendzen, Chang Liu. Genome Biol 2019
32
50

Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery.
Xiuli Bi, Ying-Juan Cheng, Bo Hu, Xiaoli Ma, Rui Wu, Jia-Wei Wang, Chang Liu. Genome Res 2017
50
50


3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments.
Pengfei Dong, Xiaoyu Tu, Po-Yu Chu, Peitao Lü, Ning Zhu, Donald Grierson, Baijuan Du, Pinghua Li, Silin Zhong. Mol Plant 2017
95
50

Active and repressed biosynthetic gene clusters have spatially distinct chromosome states.
Hans-Wilhelm Nützmann, Daniel Doerr, América Ramírez-Colmenero, Jesús Emiliano Sotelo-Fonseca, Eva Wegel, Marco Di Stefano, Steven W Wingett, Peter Fraser, Laurence Hurst, Selene L Fernandez-Valverde,[...]. Proc Natl Acad Sci U S A 2020
13
50

The matrix revolutions: towards the decoding of the plant chromatin three-dimensional reality.
Ying Huang, Natalia Yaneth Rodriguez-Granados, David Latrasse, Cecile Raynaud, Moussa Benhamed, Juan Sebastian Ramirez-Prado. J Exp Bot 2020
2
100

High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli.
Silvana van Koningsbruggen, Marek Gierlinski, Pietá Schofield, David Martin, Geoffey J Barton, Yavuz Ariyurek, Johan T den Dunnen, Angus I Lamond. Mol Biol Cell 2010
183
33

Chromatin domains in space and their functional implications.
Frédéric Pontvianne, Chang Liu. Curr Opin Plant Biol 2020
12
33

Chromosome-specific NOR inactivation explains selective rRNA gene silencing and dosage control in Arabidopsis.
Chinmayi Chandrasekhara, Gireesha Mohannath, Todd Blevins, Frederic Pontvianne, Craig S Pikaard. Genes Dev 2016
52
33

Nucleolus-associated chromatin domains are maintained under heat stress, despite nucleolar reorganization in Arabidopsis thaliana.
Ariadna Picart-Picolo, Claire Picart, Nathalie Picault, Frederic Pontvianne. J Plant Res 2020
6
33

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
33

Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome.
Frédéric Pontvianne, Marie-Christine Carpentier, Nathalie Durut, Veronika Pavlištová, Karin Jaške, Šárka Schořová, Hugues Parrinello, Marine Rohmer, Craig S Pikaard, Miloslava Fojtová,[...]. Cell Rep 2016
66
33

Organization and function of the 3D genome.
Boyan Bonev, Giacomo Cavalli. Nat Rev Genet 2016
347
33


Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure.
Ezgi Süheyla Karaaslan, Nan Wang, Natalie Faiß, Yuyu Liang, Sean A Montgomery, Sascha Laubinger, Kenneth Wayne Berendzen, Frédéric Berger, Holger Breuninger, Chang Liu. Nat Plants 2020
11
33

Subnuclear gene positioning through lamina association affects copper tolerance.
Yuki Sakamoto, Mayuko Sato, Yoshikatsu Sato, Akihito Harada, Takamasa Suzuki, Chieko Goto, Kentaro Tamura, Kiminori Toyooka, Hiroshi Kimura, Yasuyuki Ohkawa,[...]. Nat Commun 2020
3
66

Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes.
Ales Pecinka, Veit Schubert, Armin Meister, Gregor Kreth, Marco Klatte, Martin A Lysak, Jörg Fuchs, Ingo Schubert. Chromosoma 2004
153
33

Regulation of single-cell genome organization into TADs and chromatin nanodomains.
Quentin Szabo, Axelle Donjon, Ivana Jerković, Giorgio L Papadopoulos, Thierry Cheutin, Boyan Bonev, Elphège P Nora, Benoit G Bruneau, Frédéric Bantignies, Giacomo Cavalli. Nat Genet 2020
16
33

Recruitment to the nuclear periphery can alter expression of genes in human cells.
Lee E Finlan, Duncan Sproul, Inga Thomson, Shelagh Boyle, Elizabeth Kerr, Paul Perry, Bauke Ylstra, Jonathan R Chubb, Wendy A Bickmore. PLoS Genet 2008
379
33

Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin.
Sean A Montgomery, Yasuhiro Tanizawa, Bence Galik, Nan Wang, Tasuku Ito, Takako Mochizuki, Svetlana Akimcheva, John L Bowman, Valérie Cognat, Laurence Maréchal-Drouard,[...]. Curr Biol 2020
30
33

Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis.
Kinga Rutowicz, Maciej Lirski, Benoît Mermaz, Gianluca Teano, Jasmin Schubert, Imen Mestiri, Magdalena A Kroteń, Tohnyui Ndinyanka Fabrice, Simon Fritz, Stefan Grob,[...]. Genome Biol 2019
24
33

Marker gene tethering by nucleoporins affects gene expression in plants.
Sarah Smith, Carla Galinha, Sophie Desset, Frances Tolmie, David Evans, Christophe Tatout, Katja Graumann. Nucleus 2015
17
33

Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery.
Benjamin D Towbin, Cristina González-Aguilera, Ragna Sack, Dimos Gaidatzis, Véronique Kalck, Peter Meister, Peter Askjaer, Susan M Gasser. Cell 2012
335
33

Light-regulated gene repositioning in Arabidopsis.
Chun-Miao Feng, Yongjian Qiu, Elise K Van Buskirk, Emily J Yang, Meng Chen. Nat Commun 2014
58
33



The Novel Nuclear Envelope Protein KAKU4 Modulates Nuclear Morphology in Arabidopsis.
Chieko Goto, Kentaro Tamura, Yoichiro Fukao, Tomoo Shimada, Ikuko Hara-Nishimura. Plant Cell 2014
49
33

Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana.
Marco Di Stefano, Hans-Wilhelm Nützmann, Marc A Marti-Renom, Daniel Jost. Nucleic Acids Res 2021
2
100

Wheat chromatin architecture is organized in genome territories and transcription factories.
Lorenzo Concia, Alaguraj Veluchamy, Juan S Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Severine Domenichini, Natalia Y Rodriguez Granados, Soonkap Kim, Thomas Blein,[...]. Genome Biol 2020
20
33

Chromatin position effects assayed by thousands of reporters integrated in parallel.
Waseem Akhtar, Johann de Jong, Alexey V Pindyurin, Ludo Pagie, Wouter Meuleman, Jeroen de Ridder, Anton Berns, Lodewyk F A Wessels, Maarten van Lohuizen, Bas van Steensel. Cell 2013
173
33

Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate.
Paul Fransz, J Hans De Jong, Martin Lysak, Monica Ruffini Castiglione, Ingo Schubert. Proc Natl Acad Sci U S A 2002
299
33

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.
Lars Guelen, Ludo Pagie, Emilie Brasset, Wouter Meuleman, Marius B Faza, Wendy Talhout, Bert H Eussen, Annelies de Klein, Lodewyk Wessels, Wouter de Laat,[...]. Nature 2008
33

Reprogramming and remodeling: transcriptional and epigenetic regulation of salicylic acid-mediated plant defense.
Jian Chen, Michael Clinton, Guang Qi, Daowen Wang, Fengquan Liu, Zheng Qing Fu. J Exp Bot 2020
6
16

The impact of light and temperature on chromatin organization and plant adaptation.
Giorgio Perrella, Anna Zioutopoulou, Lauren R Headland, Eirini Kaiserli. J Exp Bot 2020
4
25

Epigenetics: possible applications in climate-smart crop breeding.
Serena Varotto, Eleni Tani, Eleni Abraham, Tamar Krugman, Aliki Kapazoglou, Rainer Melzer, Aleksandra Radanović, Dragana Miladinović. J Exp Bot 2020
9
16

Chromatin dynamics during interphase and cell division: similarities and differences between model and crop plants.
Ales Pecinka, Christian Chevalier, Isabelle Colas, Kriton Kalantidis, Serena Varotto, Tamar Krugman, Christos Michailidis, María-Pilar Vallés, Aitor Muñoz, Mónica Pradillo. J Exp Bot 2020
8
16

Phase separation provides a mechanism to reduce noise in cells.
A Klosin, F Oltsch, T Harmon, A Honigmann, F Jülicher, A A Hyman, C Zechner. Science 2020
45
16

Linking signaling pathways to histone acetylation dynamics in plants.
Jianjun Jiang, Adeline B Ding, Fengquan Liu, Xuehua Zhong. J Exp Bot 2020
8
16


Chromatin regulation of somatic abiotic stress memory.
Isabel Bäurle, Inês Trindade. J Exp Bot 2020
11
16


Abiotic stress-mediated modulation of the chromatin landscape in Arabidopsis thaliana.
Vivek Kumar Raxwal, Sourav Ghosh, Somya Singh, Surekha Katiyar-Agarwal, Shailendra Goel, Arun Jagannath, Amar Kumar, Vinod Scaria, Manu Agarwal. J Exp Bot 2020
3
33

Conservation of centromeric histone 3 interaction partners in plants.
Burcu Nur Keçeli, Chunlian Jin, Daniel Van Damme, Danny Geelen. J Exp Bot 2020
3
33

Similar yet critically different: the distribution, dynamics and function of histone variants.
Aline V Probst, Bénédicte Desvoyes, Crisanto Gutierrez. J Exp Bot 2020
11
16

Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology.
Emilie Debladis, Christel Llauro, Marie-Christine Carpentier, Marie Mirouze, Olivier Panaud. BMC Genomics 2017
23
16


Ribosomal DNA deletions modulate genome-wide gene expression: "rDNA-sensitive" genes and natural variation.
Silvana Paredes, Alan T Branco, Daniel L Hartl, Keith A Maggert, Bernardo Lemos. PLoS Genet 2011
80
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.