A citation-based method for searching scientific literature

Noah B Goodson, Ko U Park, Jason S Silver, Vince A Chiodo, William W Hauswirth, Joseph A Brzezinski. Dev Biol 2020
Times Cited: 4







List of co-cited articles
68 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
95
75

The human genome browser at UCSC.
W James Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, David Haussler. Genome Res 2002
75

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors.
Joseph C Corbo, Karen A Lawrence, Marcus Karlstetter, Connie A Myers, Musa Abdelaziz, William Dirkes, Karin Weigelt, Martin Seifert, Vladimir Benes, Lars G Fritsche,[...]. Genome Res 2010
124
75

The subcellular localization of Otx2 is cell-type specific and developmentally regulated in the mouse retina.
D Baas, K M Bumsted, J A Martinez, F M Vaccarino, K C Wikler, C J Barnstable. Brain Res Mol Brain Res 2000
85
50

Diffusion pseudotime robustly reconstructs lineage branching.
Laleh Haghverdi, Maren Büttner, F Alexander Wolf, Florian Buettner, Fabian J Theis. Nat Methods 2016
342
50

Requirements for Neurogenin2 during mouse postnatal retinal neurogenesis.
Angelica M Kowalchuk, Kate A Maurer, Farnaz Shoja-Taheri, Nadean L Brown. Dev Biol 2018
3
66


Structure and function of helix-loop-helix proteins.
C Murre, G Bain, M A van Dijk, I Engel, B A Furnari, M E Massari, J R Matthews, M W Quong, R R Rivera, M H Stuiver. Biochim Biophys Acta 1994
380
50

Neurog2 controls the leading edge of neurogenesis in the mammalian retina.
Robert B Hufnagel, Tien T Le, Ashley L Riesenberg, Nadean L Brown. Dev Biol 2010
67
50

Otx2 ChIP-seq reveals unique and redundant functions in the mature mouse retina.
Alexander Samuel, Michael Housset, Bruno Fant, Thomas Lamonerie. PLoS One 2014
32
50


Otx2 expression in anterior neuroectoderm and forebrain/midbrain is directed by more than six enhancers.
Daisuke Kurokawa, Tomomi Ohmura, Yusuke Sakurai, Kenichi Inoue, Yoko Suda, Shinichi Aizawa. Dev Biol 2014
14
50


Onecut1 is essential for horizontal cell genesis and retinal integrity.
Fuguo Wu, Renzhong Li, Yumiko Umino, Tadeusz J Kaczynski, Darshan Sapkota, Shengguo Li, Mengqing Xiang, Steven J Fliesler, David M Sherry, Maureen Gannon,[...]. J Neurosci 2013
42
50

Genome engineering using the CRISPR-Cas9 system.
F Ann Ran, Patrick D Hsu, Jason Wright, Vineeta Agarwala, David A Scott, Feng Zhang. Nat Protoc 2013
50

Combinatorial regulation of a Blimp1 (Prdm1) enhancer in the mouse retina.
Taylor S Mills, Tatiana Eliseeva, Stephanie M Bersie, Grace Randazzo, Jhenya Nahreini, Ko Uoon Park, Joseph A Brzezinski. PLoS One 2017
12
50

Overlapping expression patterns and redundant roles for AP-2 transcription factors in the developing mammalian retina.
Erin A Bassett, Anna Korol, Paula A Deschamps, Reinhard Buettner, Valerie A Wallace, Trevor Williams, Judith A West-Mays. Dev Dyn 2012
38
50



Nucleome Dynamics during Retinal Development.
Jackie L Norrie, Marybeth S Lupo, Beisi Xu, Issam Al Diri, Marc Valentine, Daniel Putnam, Lyra Griffiths, Jiakun Zhang, Dianna Johnson, John Easton,[...]. Neuron 2019
20
50


Mash1 promotes neuronal differentiation in the retina.
K Tomita, S Nakanishi, F Guillemot, R Kageyama. Genes Cells 1996
121
50

Expression characteristics of dual-promoter lentiviral vectors targeting retinal photoreceptors and Müller cells.
Susan L Semple-Rowland, William E Coggin, Mero Geesey, Kristofer S Eccles, Leah Abraham, Krunal Pachigar, Rachel Ludlow, Shahrokh C Khani, W Clay Smith. Mol Vis 2010
13
50

Ascl1 expression defines a subpopulation of lineage-restricted progenitors in the mammalian retina.
Joseph A Brzezinski, Euiseok J Kim, Jane E Johnson, Thomas A Reh. Development 2011
78
50

Joint binding of OTX2 and MYC in promotor regions is associated with high gene expression in medulloblastoma.
Jens Bunt, Nancy E Hasselt, Danny A Zwijnenburg, Jan Koster, Rogier Versteeg, Marcel Kool. PLoS One 2011
18
50

Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development.
Darshan Sapkota, Hemabindu Chintala, Fuguo Wu, Steven J Fliesler, Zihua Hu, Xiuqian Mu. Proc Natl Acad Sci U S A 2014
51
50

Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.
Mark M Emerson, Natalia Surzenko, Jillian J Goetz, Jeffrey Trimarchi, Constance L Cepko. Dev Cell 2013
64
50

A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells.
Gurdeep Singh, Shanelle Mullany, Sakthi D Moorthy, Richard Zhang, Tahmid Mehdi, Ruxiao Tian, Andrew G Duncan, Alan M Moses, Jennifer A Mitchell. Genome Res 2021
3
66

Regulation of Otx2 expression and its functions in mouse forebrain and midbrain.
Daisuke Kurokawa, Hiroshi Kiyonari, Rika Nakayama, Chiharu Kimura-Yoshida, Isao Matsuo, Shinichi Aizawa. Development 2004
76
50

Requirement of multiple basic helix-loop-helix genes for retinal neuronal subtype specification.
Tadamichi Akagi, Tomoyuki Inoue, Goichi Miyoshi, Yasumasa Bessho, Masayo Takahashi, Jacqueline E Lee, François Guillemot, Ryoichiro Kageyama. J Biol Chem 2004
105
50


Integral bHLH factor regulation of cell cycle exit and RGC differentiation.
Kate A Maurer, Angelica Kowalchuk, Farnaz Shoja-Taheri, Nadean L Brown. Dev Dyn 2018
5
50

Acheate-scute like 1 (Ascl1) is required for normal delta-like (Dll) gene expression and notch signaling during retinal development.
Branden R Nelson, Byron H Hartman, Catherine A Ray, Toshinori Hayashi, Olivia Bermingham-McDonogh, Thomas A Reh. Dev Dyn 2009
55
50

OTX2 represses sister cell fate choices in the developing retina to promote photoreceptor specification.
Miruna Georgiana Ghinia Tegla, Diego F Buenaventura, Diana Y Kim, Cassandra Thakurdin, Kevin C Gonzalez, Mark M Emerson. Elife 2020
9
50


Functional roles of Otx2 transcription factor in postnatal mouse retinal development.
Chieko Koike, Akihiro Nishida, Shinji Ueno, Hiromitsu Saito, Rikako Sanuki, Shigeru Sato, Akiko Furukawa, Shinichi Aizawa, Isao Matsuo, Noboru Suzuki,[...]. Mol Cell Biol 2007
125
50

Retinoid X receptor (gamma) is necessary to establish the S-opsin gradient in cone photoreceptors of the developing mouse retina.
Melanie R Roberts, Anita Hendrickson, Christopher R McGuire, Thomas A Reh. Invest Ophthalmol Vis Sci 2005
147
50

STAT Signaling Modifies Ascl1 Chromatin Binding and Limits Neural Regeneration from Muller Glia in Adult Mouse Retina.
Nikolas L Jorstad, Matthew S Wilken, Levi Todd, Connor Finkbeiner, Paul Nakamura, Nicholas Radulovich, Marcus J Hooper, Alex Chitsazan, Brent A Wilkerson, Fred Rieke,[...]. Cell Rep 2020
15
50


SCANPY: large-scale single-cell gene expression data analysis.
F Alexander Wolf, Philipp Angerer, Fabian J Theis. Genome Biol 2018
623
50


NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
50

Delays in neuronal differentiation in Mash1/Ascl1 mutants.
Alexandre Pattyn, François Guillemot, Jean-François Brunet. Dev Biol 2006
63
50

Blimp1 controls photoreceptor versus bipolar cell fate choice during retinal development.
Joseph A Brzezinski, Deepak A Lamba, Thomas A Reh. Development 2010
83
50


A novel snail-related transcription factor Smuc regulates basic helix-loop-helix transcription factor activities via specific E-box motifs.
H Kataoka, T Murayama, M Yokode, S Mori, H Sano, H Ozaki, Y Yokota, S Nishikawa, T Kita. Nucleic Acids Res 2000
66
50


Ascl1 and Neurog2 form novel complexes and regulate Delta-like3 (Dll3) expression in the neural tube.
R Michael Henke, David M Meredith, Mark D Borromeo, Trisha K Savage, Jane E Johnson. Dev Biol 2009
52
50

Cytogenesis in the monkey retina.
M M La Vail, D H Rapaport, P Rakic. J Comp Neurol 1991
229
50

Transcriptional profiling of murine retinas undergoing semi-synchronous cone photoreceptor differentiation.
Michael L Kaufman, Ko Uoon Park, Noah B Goodson, Shereen Chew, Stephanie Bersie, Kenneth L Jones, Deepak A Lamba, Joseph A Brzezinski. Dev Biol 2019
5
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.