A citation-based method for searching scientific literature

Hui-Ting Lee, Samantha Sanford, Tapas Paul, Joshua Choe, Arindam Bose, Patricia L Opresko, Sua Myong. Biochemistry 2020
Times Cited: 6







List of co-cited articles
13 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-molecule imaging reveals a common mechanism shared by G-quadruplex-resolving helicases.
Ramreddy Tippana, Helen Hwang, Patricia L Opresko, Vilhelm A Bohr, Sua Myong. Proc Natl Acad Sci U S A 2016
49
50

A practical guide to single-molecule FRET.
Rahul Roy, Sungchul Hohng, Taekjip Ha. Nat Methods 2008
50

Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36.
Michael C Chen, Ramreddy Tippana, Natalia A Demeshkina, Pierre Murat, Shankar Balasubramanian, Sua Myong, Adrian R Ferré-D'Amaré. Nature 2018
100
50

RNA G-quadruplex is resolved by repetitive and ATP-dependent mechanism of DHX36.
Ramreddy Tippana, Michael C Chen, Natalia A Demeshkina, Adrian R Ferré-D'Amaré, Sua Myong. Nat Commun 2019
24
33



POT1-TPP1 regulates telomeric overhang structural dynamics.
Helen Hwang, Noah Buncher, Patricia L Opresko, Sua Myong. Structure 2012
79
33


E. coli Rep helicase and RecA recombinase unwind G4 DNA and are important for resistance to G4-stabilizing ligands.
Tapas Paul, Andrew F Voter, Rachel R Cueny, Momčilo Gavrilov, Taekjip Ha, James L Keck, Sua Myong. Nucleic Acids Res 2020
7
33

Telomeric overhang length determines structural dynamics and accessibility to telomerase and ALT-associated proteins.
Helen Hwang, Alex Kreig, Jacob Calvert, Justin Lormand, Yongho Kwon, James M Daley, Patrick Sung, Patricia L Opresko, Sua Myong. Structure 2014
35
33

Telomeric G-quadruplexes are a substrate and site of localization for human telomerase.
Aaron L Moye, Karina C Porter, Scott B Cohen, Tram Phan, Katherine G Zyner, Natsuki Sasaki, George O Lovrecz, Jennifer L Beck, Tracy M Bryan. Nat Commun 2015
120
33

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
672
33

Molecular mechanisms by which oxidative DNA damage promotes telomerase activity.
Hui-Ting Lee, Arindam Bose, Chun-Ying Lee, Patricia L Opresko, Sua Myong. Nucleic Acids Res 2017
31
33


Cdk-inhibitory activity and stability of p27Kip1 are directly regulated by oncogenic tyrosine kinases.
Matthias Grimmler, Yuefeng Wang, Thomas Mund, Zoran Cilensek, Eva-Maria Keidel, M Brett Waddell, Heidelinde Jäkel, Michael Kullmann, Richard W Kriwacki, Ludger Hengst. Cell 2007
246
16

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.
Andrej Sali, Helen M Berman, Torsten Schwede, Jill Trewhella, Gerard Kleywegt, Stephen K Burley, John Markley, Haruki Nakamura, Paul Adams, Alexandre M J J Bonvin,[...]. Structure 2015
116
16

The unfolding story of three-dimensional domain swapping.
Frederic Rousseau, Joost W H Schymkowitz, Laura S Itzhaki. Structure 2003
164
16

Valence and patterning of aromatic residues determine the phase behavior of prion-like domains.
Erik W Martin, Alex S Holehouse, Ivan Peran, Mina Farag, J Jeremias Incicco, Anne Bremer, Christy R Grace, Andrea Soranno, Rohit V Pappu, Tanja Mittag. Science 2020
139
16

Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase.
Timothy D Craggs, Marko Sustarsic, Anne Plochowietz, Majid Mosayebi, Hendrik Kaju, Andrew Cuthbert, Johannes Hohlbein, Laura Domicevica, Philip C Biggin, Jonathan P K Doye,[...]. Nucleic Acids Res 2019
18
16

Disordered RNA chaperones can enhance nucleic acid folding via local charge screening.
Erik D Holmstrom, Zhaowei Liu, Daniel Nettels, Robert B Best, Benjamin Schuler. Nat Commun 2019
18
16

The binding mechanisms of intrinsically disordered proteins.
Jakob Dogan, Stefano Gianni, Per Jemth. Phys Chem Chem Phys 2014
90
16

Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
16



Specific Conformational Dynamics and Expansion Underpin a Multi-Step Mechanism for Specific Binding of p27 with Cdk2/Cyclin A.
Maksym Tsytlonok, Katherina Hemmen, George Hamilton, Narendar Kolimi, Suren Felekyan, Claus A M Seidel, Peter Tompa, Hugo Sanabria. J Mol Biol 2020
6
16

Protein Regulation by Intrinsically Disordered Regions: A Role for Subdomains in the IDR of the HIV-1 Rev Protein.
Ofrah Faust, Dana Grunhaus, Odelia Shimshon, Eylon Yavin, Assaf Friedler. Chembiochem 2018
5
20

Role of intrinsic flexibility in signal transduction mediated by the cell cycle regulator, p27 Kip1.
Charles A Galea, Amanda Nourse, Yuefeng Wang, Sivashankar G Sivakolundu, William T Heller, Richard W Kriwacki. J Mol Biol 2008
96
16

Extreme disorder in an ultrahigh-affinity protein complex.
Alessandro Borgia, Madeleine B Borgia, Katrine Bugge, Vera M Kissling, Pétur O Heidarsson, Catarina B Fernandes, Andrea Sottini, Andrea Soranno, Karin J Buholzer, Daniel Nettels,[...]. Nature 2018
248
16

Crystal structure of the p27Kip1 cyclin-dependent-kinase inhibitor bound to the cyclin A-Cdk2 complex.
A A Russo, P D Jeffrey, A K Patten, J Massagué, N P Pavletich. Nature 1996
752
16



Resolving dynamics and function of transient states in single enzyme molecules.
Hugo Sanabria, Dmitro Rodnin, Katherina Hemmen, Thomas-Otavio Peulen, Suren Felekyan, Mark R Fleissner, Mykola Dimura, Felix Koberling, Ralf Kühnemuth, Wayne Hubbell,[...]. Nat Commun 2020
21
16

The role of the LH subdomain in the function of the Cip/Kip cyclin-dependent kinase regulators.
Steve Otieno, Christy R Grace, Richard W Kriwacki. Biophys J 2011
13
16

Ab initio folding of proteins with all-atom discrete molecular dynamics.
Feng Ding, Douglas Tsao, Huifen Nie, Nikolay V Dokholyan. Structure 2008
199
16

Intrinsically Disordered Regions of the DNA-Binding Domain of Human FoxP1 Facilitate Domain Swapping.
Exequiel Medina, Pablo Villalobos, George L Hamilton, Elizabeth A Komives, Hugo Sanabria, César A Ramírez-Sarmiento, Jorge Babul. J Mol Biol 2020
2
50

Huntington's disease protein contributes to RNA-mediated gene silencing through association with Argonaute and P bodies.
Jeffrey N Savas, Anthony Makusky, Søren Ottosen, David Baillat, Florian Then, Dimitri Krainc, Ramin Shiekhattar, Sanford P Markey, Naoko Tanese. Proc Natl Acad Sci U S A 2008
108
16

Decreased expression of p27 protein is associated with advanced tumor stage in hepatocellular carcinoma.
A Tannapfel, D Grund, A Katalinic, D Uhlmann, F Köckerling, U Haugwitz, M Wasner, J Hauss, K Engeland, C Wittekind. Int J Cancer 2000
75
16

Microsecond protein dynamics observed at the single-molecule level.
Takuhiro Otosu, Kunihiko Ishii, Tahei Tahara. Nat Commun 2015
36
16

High precision FRET studies reveal reversible transitions in nucleosomes between microseconds and minutes.
Alexander Gansen, Suren Felekyan, Ralf Kühnemuth, Kathrin Lehmann, Katalin Tóth, Claus A M Seidel, Jörg Langowski. Nat Commun 2018
25
16

Dual Inhibition of CDK4 and CDK2 via Targeting p27 Tyrosine Phosphorylation Induces a Potent and Durable Response in Breast Cancer Cells.
Priyank Patel, Vladislav Tsiperson, Susan R S Gottesman, Jonathan Somma, Stacy W Blain. Mol Cancer Res 2018
25
16

Spontaneous Switching among Conformational Ensembles in Intrinsically Disordered Proteins.
Ucheor B Choi, Hugo Sanabria, Tatyana Smirnova, Mark E Bowen, Keith R Weninger. Biomolecules 2019
13
16


What does it mean to be natively unfolded?
Vladimir N Uversky. Eur J Biochem 2002
715
16

Coarse-grained models for proteins.
Valentina Tozzini. Curr Opin Struct Biol 2005
524
16

Electrostatic Contributions to Protein Quinary Structure.
Rachel D Cohen, Gary J Pielak. J Am Chem Soc 2016
43
16

Navigating the folding routes.
P G Wolynes, J N Onuchic, D Thirumalai. Science 1995
703
16

Conformational changes and catalytic inefficiency associated with Mot1-mediated TBP-DNA dissociation.
Gregor Heiss, Evelyn Ploetz, Lena Voith von Voithenberg, Ramya Viswanathan, Samson Glaser, Peter Schluesche, Sushi Madhira, Michael Meisterernst, David T Auble, Don C Lamb. Nucleic Acids Res 2019
4
25

Coordinated Conformational Processing of the Tumor Suppressor Protein p53 by the Hsp70 and Hsp90 Chaperone Machineries.
Vinay Dahiya, Ganesh Agam, Jannis Lawatscheck, Daniel Andreas Rutz, Don C Lamb, Johannes Buchner. Mol Cell 2019
24
16

p27 phosphorylation by Src regulates inhibition of cyclin E-Cdk2.
Isabel Chu, Jun Sun, Angel Arnaout, Harriette Kahn, Wedad Hanna, Steven Narod, Ping Sun, Cheng-Keat Tan, Ludger Hengst, Joyce Slingerland. Cell 2007
266
16

Dynamics of the nucleosomal histone H3 N-terminal tail revealed by high precision single-molecule FRET.
Kathrin Lehmann, Suren Felekyan, Ralf Kühnemuth, Mykola Dimura, Katalin Tóth, Claus A M Seidel, Jörg Langowski. Nucleic Acids Res 2020
12
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.