A citation-based method for searching scientific literature

Dogukan Mizrak, N Sumru Bayin, Jinzhou Yuan, Zhouzerui Liu, Radu M Suciu, Micah J Niphakis, Nhi Ngo, Kenneth M Lum, Benjamin F Cravatt, Alexandra L Joyner, Peter A Sims. Cell Rep 2020
Times Cited: 25







List of co-cited articles
203 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-Cell Analysis of Regional Differences in Adult V-SVZ Neural Stem Cell Lineages.
Dogukan Mizrak, Hanna Mendes Levitin, Ana C Delgado, Valerie Crotet, Jinzhou Yuan, Zayna Chaker, Violeta Silva-Vargas, Peter A Sims, Fiona Doetsch. Cell Rep 2019
103
48

Single-Cell Transcriptomics Characterizes Cell Types in the Subventricular Zone and Uncovers Molecular Defects Impairing Adult Neurogenesis.
Vera Zywitza, Aristotelis Misios, Lena Bunatyan, Thomas E Willnow, Nikolaus Rajewsky. Cell Rep 2018
93
36

NOTUM inhibition increases endocortical bone formation and bone strength.
Robert Brommage, Jeff Liu, Peter Vogel, Faika Mseeh, Andrea Y Thompson, David G Potter, Melanie K Shadoan, Gwenn M Hansen, Sabrina Jeter-Jones, Jie Cui,[...]. Bone Res 2019
39
32

Notum deacylates Wnt proteins to suppress signalling activity.
Satoshi Kakugawa, Paul F Langton, Matthias Zebisch, Steve Howell, Tao-Hsin Chang, Yan Liu, Ten Feizi, Ganka Bineva, Nicola O'Reilly, Ambrosius P Snijders,[...]. Nature 2015
250
32

Notum produced by Paneth cells attenuates regeneration of aged intestinal epithelium.
Nalle Pentinmikko, Sharif Iqbal, Miyeko Mana, Simon Andersson, Armand B Cognetta, Radu M Suciu, Jatin Roper, Kalle Luopajärvi, Eino Markelin, Swetha Gopalakrishnan,[...]. Nature 2019
93
32

Selective Irreversible Inhibitors of the Wnt-Deacylating Enzyme NOTUM Developed by Activity-Based Protein Profiling.
Radu M Suciu, Armand B Cognetta, Zachary E Potter, Benjamin F Cravatt. ACS Med Chem Lett 2018
24
33

Structural characterization of melatonin as an inhibitor of the Wnt deacylase Notum.
Yuguang Zhao, Jingshan Ren, James Hillier, Margaret Jones, Weixian Lu, Edith Yvonne Jones. J Pineal Res 2020
15
46

Discovery of 2-phenoxyacetamides as inhibitors of the Wnt-depalmitoleating enzyme NOTUM from an X-ray fragment screen.
Benjamin N Atkinson, David Steadman, Yuguang Zhao, James Sipthorp, Luca Vecchia, Reinis R Ruza, Fiona Jeganathan, Georgie Lines, Sarah Frew, Amy Monaghan,[...]. Medchemcomm 2019
17
41

Stimulation of cortical bone formation with thienopyrimidine based inhibitors of Notum Pectinacetylesterase.
James E Tarver, Praveen K Pabba, Joseph Barbosa, Qiang Han, Michael W Gardyan, Robert Brommage, Andrea Y Thompson, James M Schmidt, Alan G E Wilson, Wei He,[...]. Bioorg Med Chem Lett 2016
26
28

Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury.
Enric Llorens-Bobadilla, Sheng Zhao, Avni Baser, Gonzalo Saiz-Castro, Klara Zwadlo, Ana Martin-Villalba. Cell Stem Cell 2015
404
28

Notum is required for neural and head induction via Wnt deacylation, oxidation, and inactivation.
Xinjun Zhang, Seong-Moon Cheong, Nathalia G Amado, Alice H Reis, Bryan T MacDonald, Matthias Zebisch, E Yvonne Jones, Jose Garcia Abreu, Xi He. Dev Cell 2015
114
24

Scaffold-hopping identifies furano[2,3-d]pyrimidine amides as potent Notum inhibitors.
Benjamin N Atkinson, David Steadman, William Mahy, Yuguang Zhao, James Sipthorp, Elliott D Bayle, Fredrik Svensson, George Papageorgiou, Fiona Jeganathan, Sarah Frew,[...]. Bioorg Med Chem Lett 2020
11
54

Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage.
Ben W Dulken, Dena S Leeman, Stéphane C Boutet, Katja Hebestreit, Anne Brunet. Cell Rep 2017
173
24

5-Phenyl-1,3,4-oxadiazol-2(3H)-ones Are Potent Inhibitors of Notum Carboxylesterase Activity Identified by the Optimization of a Crystallographic Fragment Screening Hit.
William Mahy, Nicky J Willis, Yuguang Zhao, Hannah L Woodward, Fredrik Svensson, James Sipthorp, Luca Vecchia, Reinis R Ruza, James Hillier, Svend Kjær,[...]. J Med Chem 2020
10
60

Wnt/β-catenin signaling and disease.
Hans Clevers, Roel Nusse. Cell 2012
20

Screening of a Custom-Designed Acid Fragment Library Identifies 1-Phenylpyrroles and 1-Phenylpyrrolidines as Inhibitors of Notum Carboxylesterase Activity.
William Mahy, Mikesh Patel, David Steadman, Hannah L Woodward, Benjamin N Atkinson, Fredrik Svensson, Nicky J Willis, Alister Flint, Dimitra Papatheodorou, Yuguang Zhao,[...]. J Med Chem 2020
9
55

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
20

Structural basis of Wnt recognition by Frizzled.
Claudia Y Janda, Deepa Waghray, Aron M Levin, Christoph Thomas, K Christopher Garcia. Science 2012
531
20


Single-cell analysis of the ventricular-subventricular zone reveals signatures of dorsal and ventral adult neurogenesis.
Arantxa Cebrian-Silla, Marcos Assis Nascimento, Stephanie A Redmond, Benjamin Mansky, David Wu, Kirsten Obernier, Ricardo Romero Rodriguez, Susana Gonzalez-Granero, Jose Manuel García-Verdugo, Daniel A Lim,[...]. Elife 2021
20
25

High-resolution mouse subventricular zone stem-cell niche transcriptome reveals features of lineage, anatomy, and aging.
Xuanhua P Xie, Dan R Laks, Daochun Sun, Asaf Poran, Ashley M Laughney, Zilai Wang, Jessica Sam, German Belenguer, Isabel Fariñas, Olivier Elemento,[...]. Proc Natl Acad Sci U S A 2020
18
27

Neural stem cells confer unique pinwheel architecture to the ventricular surface in neurogenic regions of the adult brain.
Zaman Mirzadeh, Florian T Merkle, Mario Soriano-Navarro, Jose Manuel Garcia-Verdugo, Arturo Alvarez-Buylla. Cell Stem Cell 2008
694
16

Caffeine inhibits Notum activity by binding at the catalytic pocket.
Yuguang Zhao, Jingshan Ren, James Hillier, Weixian Lu, Edith Yvonne Jones. Commun Biol 2020
9
44

An improved, scalable synthesis of Notum inhibitor LP-922056 using 1-chloro-1,2-benziodoxol-3-one as a superior electrophilic chlorinating agent.
Nicky J Willis, Elliott D Bayle, George Papageorgiou, David Steadman, Benjamin N Atkinson, William Mahy, Paul V Fish. Beilstein J Org Chem 2019
7
57

Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.
Jaehoon Shin, Daniel A Berg, Yunhua Zhu, Joseph Y Shin, Juan Song, Michael A Bonaguidi, Grigori Enikolopov, David W Nauen, Kimberly M Christian, Guo-li Ming,[...]. Cell Stem Cell 2015
462
16

Embryonic Origin of Postnatal Neural Stem Cells.
Luis C Fuentealba, Santiago B Rompani, Jose I Parraguez, Kirsten Obernier, Ricardo Romero, Constance L Cepko, Arturo Alvarez-Buylla. Cell 2015
283
16

Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing.
Hannah Hochgerner, Amit Zeisel, Peter Lönnerberg, Sten Linnarsson. Nat Neurosci 2018
174
16

Live imaging of neurogenesis in the adult mouse hippocampus.
Gregor-Alexander Pilz, Sara Bottes, Marion Betizeau, David J Jörg, Stefano Carta, Benjamin D Simons, Fritjof Helmchen, Sebastian Jessberger. Science 2018
158
16

In vivo clonal analysis reveals self-renewing and multipotent adult neural stem cell characteristics.
Michael A Bonaguidi, Michael A Wheeler, Jason S Shapiro, Ryan P Stadel, Gerald J Sun, Guo-li Ming, Hongjun Song. Cell 2011
571
16

A Common Embryonic Origin of Stem Cells Drives Developmental and Adult Neurogenesis.
Daniel A Berg, Yijing Su, Dennisse Jimenez-Cyrus, Aneek Patel, Nancy Huang, David Morizet, Stephanie Lee, Reeti Shah, Francisca Rojas Ringeling, Rajan Jain,[...]. Cell 2019
100
16

Quiescence Modulates Stem Cell Maintenance and Regenerative Capacity in the Aging Brain.
Georgios Kalamakis, Daniel Brüne, Srikanth Ravichandran, Jan Bolz, Wenqiang Fan, Frederik Ziebell, Thomas Stiehl, Francisco Catalá-Martinez, Janina Kupke, Sheng Zhao,[...]. Cell 2019
149
16

A Single-Cell RNA Sequencing Study Reveals Cellular and Molecular Dynamics of the Hippocampal Neurogenic Niche.
Benedetta Artegiani, Anna Lyubimova, Mauro Muraro, Johan H van Es, Alexander van Oudenaarden, Hans Clevers. Cell Rep 2017
114
16

Adult Neurogenesis Is Sustained by Symmetric Self-Renewal and Differentiation.
Kirsten Obernier, Arantxa Cebrian-Silla, Matthew Thomson, José Ignacio Parraguez, Rio Anderson, Cristina Guinto, José Rodas Rodriguez, José-Manuel Garcia-Verdugo, Arturo Alvarez-Buylla. Cell Stem Cell 2018
121
16

Troy+ brain stem cells cycle through quiescence and regulate their number by sensing niche occupancy.
Onur Basak, Teresa G Krieger, Mauro J Muraro, Kay Wiebrands, Daniel E Stange, Javier Frias-Aldeguer, Nicolas C Rivron, Marc van de Wetering, Johan H van Es, Alexander van Oudenaarden,[...]. Proc Natl Acad Sci U S A 2018
74
16

Neurogenesis in the adult human hippocampus.
P S Eriksson, E Perfilieva, T Björk-Eriksson, A M Alborn, C Nordborg, D A Peterson, F H Gage. Nat Med 1998
16

Notum deacylates octanoylated ghrelin.
Yuguang Zhao, Laura-Nadine Schuhmacher, Morgan Roberts, Satoshi Kakugawa, Ganka Bineva-Todd, Steve Howell, Nicola O'Reilly, Christine Perret, Ambrosius P Snijders, Jean-Paul Vincent,[...]. Mol Metab 2021
12
33

Subventricular zone astrocytes are neural stem cells in the adult mammalian brain.
F Doetsch, I Caillé, D A Lim, J M García-Verdugo, A Alvarez-Buylla. Cell 1999
16

NOTUM from Apc-mutant cells biases clonal competition to initiate cancer.
Dustin J Flanagan, Nalle Pentinmikko, Kalle Luopajärvi, Nicky J Willis, Kathryn Gilroy, Alexander P Raven, Lynn Mcgarry, Johanna I Englund, Anna T Webb, Sandra Scharaw,[...]. Nature 2021
53
16

New neurons follow the flow of cerebrospinal fluid in the adult brain.
Kazunobu Sawamoto, Hynek Wichterle, Oscar Gonzalez-Perez, Jeremy A Cholfin, Masayuki Yamada, Nathalie Spassky, Noel S Murcia, Jose Manuel Garcia-Verdugo, Oscar Marin, John L R Rubenstein,[...]. Science 2006
556
12

Adult Neurogenesis in the Hippocampus: From Stem Cells to Behavior.
J Tiago Gonçalves, Simon T Schafer, Fred H Gage. Cell 2016
596
12

Wnt7a regulates multiple steps of neurogenesis.
Qiuhao Qu, Guoqiang Sun, Kiyohito Murai, Peng Ye, Wendong Li, Grace Asuelime, Yuen-Ting Cheung, Yanhong Shi. Mol Cell Biol 2013
86
12

Vascular development in the retina and inner ear: control by Norrin and Frizzled-4, a high-affinity ligand-receptor pair.
Qiang Xu, Yanshu Wang, Alain Dabdoub, Philip M Smallwood, John Williams, Chad Woods, Matthew W Kelley, Li Jiang, William Tasman, Kang Zhang,[...]. Cell 2004
625
12

Wnt proteins are lipid-modified and can act as stem cell growth factors.
Karl Willert, Jeffrey D Brown, Esther Danenberg, Andrew W Duncan, Irving L Weissman, Tannishtha Reya, John R Yates, Roel Nusse. Nature 2003
12


Activity-based protein profiling: the serine hydrolases.
Y Liu, M P Patricelli, B F Cravatt. Proc Natl Acad Sci U S A 1999
756
12

Wnt proteins as modulators of synaptic plasticity.
Faye McLeod, Patricia C Salinas. Curr Opin Neurobiol 2018
44
12

Wnt Signaling Deregulation in the Aging and Alzheimer's Brain.
Ernest Palomer, Johanna Buechler, Patricia C Salinas. Front Cell Neurosci 2019
84
12

Osteoblast-derived NOTUM reduces cortical bone mass in mice and the NOTUM locus is associated with bone mineral density in humans.
Sofia Movérare-Skrtic, Karin H Nilsson, Petra Henning, Thomas Funck-Brentano, Maria Nethander, Fernando Rivadeneira, Glaucia Coletto Nunes, Antti Koskela, Juha Tuukkanen, Jan Tuckermann,[...]. FASEB J 2019
15
20


Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis.
Jacob H Levine, Erin F Simonds, Sean C Bendall, Kara L Davis, El-ad D Amir, Michelle D Tadmor, Oren Litvin, Harris G Fienberg, Astraea Jager, Eli R Zunder,[...]. Cell 2015
955
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.