A citation-based method for searching scientific literature

Joy Chakraborty, Elena Ziviani. Front Physiol 2020
Times Cited: 5







List of co-cited articles
47 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes.
Francisca E Reyes-Turcu, Karen H Ventii, Keith D Wilkinson. Annu Rev Biochem 2009
933
60

Enhancement of proteasome activity by a small-molecule inhibitor of USP14.
Byung-Hoon Lee, Min Jae Lee, Soyeon Park, Dong-Chan Oh, Suzanne Elsasser, Ping-Chung Chen, Carlos Gartner, Nevena Dimova, John Hanna, Steven P Gygi,[...]. Nature 2010
640
60

Role of mitochondrial ROS in the brain: from physiology to neurodegeneration.
Plamena R Angelova, Andrey Y Abramov. FEBS Lett 2018
216
60

Systematic and quantitative assessment of the ubiquitin-modified proteome.
Woong Kim, Eric J Bennett, Edward L Huttlin, Ailan Guo, Jing Li, Anthony Possemato, Mathew E Sowa, Ramin Rad, John Rush, Michael J Comb,[...]. Mol Cell 2011
40

An inhibitor of the proteasomal deubiquitinating enzyme USP14 induces tau elimination in cultured neurons.
Monica Boselli, Byung-Hoon Lee, Jessica Robert, Miguel A Prado, Sang-Won Min, Chialin Cheng, M Catarina Silva, Changhyun Seong, Suzanne Elsasser, Ketki M Hatle,[...]. J Biol Chem 2017
69
40

USP10 regulates p53 localization and stability by deubiquitinating p53.
Jian Yuan, Kuntian Luo, Lizhi Zhang, John C Cheville, Zhenkun Lou. Cell 2010
330
40


A novel type of deubiquitinating enzyme.
Paul C Evans, Trevor S Smith, Meng-Jiun Lai, Mark G Williams, David F Burke, Karen Heyninck, Marja M Kreike, Rudi Beyaert, Tom L Blundell, Peter J Kilshaw. J Biol Chem 2003
126
40

Regulation of Deubiquitinating Enzymes by Post-Translational Modifications.
Tanuza Das, Sang Chul Shin, Eun Joo Song, Eunice EunKyeong Kim. Int J Mol Sci 2020
11
40

OTU deubiquitinases reveal mechanisms of linkage specificity and enable ubiquitin chain restriction analysis.
Tycho E T Mevissen, Manuela K Hospenthal, Paul P Geurink, Paul R Elliott, Masato Akutsu, Nadia Arnaudo, Reggy Ekkebus, Yogesh Kulathu, Tobias Wauer, Farid El Oualid,[...]. Cell 2013
316
40

Regulation of monoubiquitinated PCNA by DUB autocleavage.
Tony T Huang, Sebastian M B Nijman, Kanchan D Mirchandani, Paul J Galardy, Martin A Cohn, Wilhelm Haas, Steven P Gygi, Hidde L Ploegh, René Bernards, Alan D D'Andrea. Nat Cell Biol 2006
393
40

Seizures are regulated by ubiquitin-specific peptidase 9 X-linked (USP9X), a de-ubiquitinase.
Lily Paemka, Vinit B Mahajan, Salleh N Ehaideb, Jessica M Skeie, Men Chee Tan, Shu Wu, Allison J Cox, Levi P Sowers, Jozef Gecz, Lachlan Jolly,[...]. PLoS Genet 2015
46
40

Deubiquitinases and the new therapeutic opportunities offered to cancer.
Roland Pfoh, Ira Kay Lacdao, Vivian Saridakis. Endocr Relat Cancer 2015
80
40

Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde.
Min Hu, Pingwei Li, Muyang Li, Wenyu Li, Tingting Yao, Jia-Wei Wu, Wei Gu, Robert E Cohen, Yigong Shi. Cell 2002
437
40

Pharmacological inhibition of USP30 activates tissue-specific mitophagy.
Hongke Luo, Judith Krigman, Ruohan Zhang, Mingchong Yang, Nuo Sun. Acta Physiol (Oxf) 2021
5
40

A genomic and functional inventory of deubiquitinating enzymes.
Sebastian M B Nijman, Mark P A Luna-Vargas, Arno Velds, Thijn R Brummelkamp, Annette M G Dirac, Titia K Sixma, René Bernards. Cell 2005
40

USP47 is a deubiquitylating enzyme that regulates base excision repair by controlling steady-state levels of DNA polymerase β.
Jason L Parsons, Irina I Dianova, Svetlana V Khoronenkova, Mariola J Edelmann, Benedikt M Kessler, Grigory L Dianov. Mol Cell 2011
75
40

A20 promotes melanoma progression via the activation of Akt pathway.
Jinyuan Ma, Huina Wang, Sen Guo, Xiuli Yi, Tao Zhao, Yu Liu, Qiong Shi, Tianwen Gao, Chunying Li, Weinan Guo. Cell Death Dis 2020
4
50


Molecular recognition of p53 and MDM2 by USP7/HAUSP.
Yi Sheng, Vivian Saridakis, Feroz Sarkari, Shili Duan, Tianne Wu, Cheryl H Arrowsmith, Lori Frappier. Nat Struct Mol Biol 2006
181
40

The increasing complexity of the ubiquitin code.
Richard Yau, Michael Rape. Nat Cell Biol 2016
463
40

Ubiquitin modifications.
Kirby N Swatek, David Komander. Cell Res 2016
677
40

USP7 deubiquitinates and stabilizes NOTCH1 in T-cell acute lymphoblastic leukemia.
Huizhuang Shan, Xiangyun Li, Xinhua Xiao, Yuting Dai, Jinyan Huang, Junjun Song, Meng Liu, Li Yang, Hu Lei, Yin Tong,[...]. Signal Transduct Target Ther 2018
25
40


Synthesis and evaluation of derivatives of the proteasome deubiquitinase inhibitor b-AP15.
Xin Wang, Pádraig D'Arcy, Thomas R Caulfield, Aneel Paulus, Kasyapa Chitta, Chitralekha Mohanty, Joachim Gullbo, Asher Chanan-Khan, Stig Linder. Chem Biol Drug Des 2015
57
40

The ER-resident ubiquitin-specific protease 19 participates in the UPR and rescues ERAD substrates.
Gerco C Hassink, Bin Zhao, Ramakrishna Sompallae, Mikael Altun, Stefano Gastaldello, Nikolay V Zinin, Maria G Masucci, Kristina Lindsten. EMBO Rep 2009
94
40

CYLD is a deubiquitinating enzyme that negatively regulates NF-kappaB activation by TNFR family members.
Eirini Trompouki, Eudoxia Hatzivassiliou, Theodore Tsichritzis, Hannah Farmer, Alan Ashworth, George Mosialos. Nature 2003
721
40

FOXO4 transcriptional activity is regulated by monoubiquitination and USP7/HAUSP.
Armando van der Horst, Alida M M de Vries-Smits, Arjan B Brenkman, Miranda H van Triest, Niels van den Broek, Frédéric Colland, Madelon M Maurice, Boudewijn M T Burgering. Nat Cell Biol 2006
358
40

A UAF1-containing multisubunit protein complex regulates the Fanconi anemia pathway.
Martin A Cohn, Przemyslaw Kowal, Kailin Yang, Wilhelm Haas, Tony T Huang, Steven P Gygi, Alan D D'Andrea. Mol Cell 2007
250
40


Reversible inactivation of deubiquitinases by reactive oxygen species in vitro and in cells.
Jin-Gu Lee, Kheewoong Baek, Nia Soetandyo, Yihong Ye. Nat Commun 2013
102
40

The ubiquitin code.
David Komander, Michael Rape. Annu Rev Biochem 2012
40

Deubiquitinases as a signaling target of oxidative stress.
Xiomaris M Cotto-Rios, Miklós Békés, Jessica Chapman, Beatrix Ueberheide, Tony T Huang. Cell Rep 2012
114
40

Proteasome recruitment and activation of the Uch37 deubiquitinating enzyme by Adrm1.
Tingting Yao, Ling Song, Wei Xu, George N DeMartino, Laurence Florens, Selene K Swanson, Michael P Washburn, Ronald C Conaway, Joan Weliky Conaway, Robert E Cohen. Nat Cell Biol 2006
245
40

A role for the deubiquitinating enzyme USP28 in control of the DNA-damage response.
Dong Zhang, Kathrin Zaugg, Tak W Mak, Stephen J Elledge. Cell 2006
241
40

ROS and ROS-Mediated Cellular Signaling.
Jixiang Zhang, Xiaoli Wang, Vikash Vikash, Qing Ye, Dandan Wu, Yulan Liu, Weiguo Dong. Oxid Med Cell Longev 2016
640
40

Phase 1 study of the protein deubiquitinase inhibitor VLX1570 in patients with relapsed and/or refractory multiple myeloma.
Eric K Rowinsky, Agne Paner, Jesus G Berdeja, Claudia Paba-Prada, Parameswaran Venugopal, Kimmo Porkka, Joachim Gullbo, Stig Linder, Angelica Loskog, Paul G Richardson,[...]. Invest New Drugs 2020
22
40

Cysteine oxidative posttranslational modifications: emerging regulation in the cardiovascular system.
Heaseung S Chung, Sheng-Bing Wang, Vidya Venkatraman, Christopher I Murray, Jennifer E Van Eyk. Circ Res 2013
158
40

MINDY-1 Is a Member of an Evolutionarily Conserved and Structurally Distinct New Family of Deubiquitinating Enzymes.
Syed Arif Abdul Rehman, Yosua Adi Kristariyanto, Soo-Youn Choi, Pedro Junior Nkosi, Simone Weidlich, Karim Labib, Kay Hofmann, Yogesh Kulathu. Mol Cell 2016
179
40

Regulation of A20 and other OTU deubiquitinases by reversible oxidation.
Yogesh Kulathu, Francisco J Garcia, Tycho E T Mevissen, Martin Busch, Nadia Arnaudo, Kate S Carroll, David Barford, David Komander. Nat Commun 2013
94
40



Mitochondria, oxidants, and aging.
Robert S Balaban, Shino Nemoto, Toren Finkel. Cell 2005
40

Oxidative modifications and down-regulation of ubiquitin carboxyl-terminal hydrolase L1 associated with idiopathic Parkinson's and Alzheimer's diseases.
Joungil Choi, Allan I Levey, Susan T Weintraub, Howard D Rees, Marla Gearing, Lih-Shen Chin, Lian Li. J Biol Chem 2004
431
40



Mitochondrial electron transport chain, ROS generation and uncoupling (Review).
Ru-Zhou Zhao, Shuai Jiang, Lin Zhang, Zhi-Bin Yu. Int J Mol Med 2019
232
40

Dynamic changes during acid-induced activation of influenza hemagglutinin.
Natalie K Garcia, Miklos Guttman, Jamie L Ebner, Kelly K Lee. Structure 2015
47
20

Complex-centric proteome profiling by SEC-SWATH-MS.
Moritz Heusel, Isabell Bludau, George Rosenberger, Robin Hafen, Max Frank, Amir Banaei-Esfahani, Audrey van Drogen, Ben C Collins, Matthias Gstaiger, Ruedi Aebersold. Mol Syst Biol 2019
51
20

Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing.
Jana Zecha, Chien-Yun Lee, Florian P Bayer, Chen Meng, Vincent Grass, Johannes Zerweck, Karsten Schnatbaum, Thomas Michler, Andreas Pichlmair, Christina Ludwig,[...]. Mol Cell Proteomics 2020
25
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.