A citation-based method for searching scientific literature

Stefano Alivernini, Lucy MacDonald, Aziza Elmesmari, Samuel Finlay, Barbara Tolusso, Maria Rita Gigante, Luca Petricca, Clara Di Mario, Laura Bui, Simone Perniola, Moustafa Attar, Marco Gessi, Anna Laura Fedele, Sabarinadh Chilaka, Domenico Somma, Stephen N Sansom, Andrew Filer, Charles McSharry, Neal L Millar, Kristina Kirschner, Alessandra Nerviani, Myles J Lewis, Costantino Pitzalis, Andrew R Clark, Gianfranco Ferraccioli, Irina Udalova, Christopher D Buckley, Elisa Gremese, Iain B McInnes, Thomas D Otto, Mariola Kurowska-Stolarska. Nat Med 2020
Times Cited: 122







List of co-cited articles
954 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry.
Fan Zhang, Kevin Wei, Kamil Slowikowski, Chamith Y Fonseka, Deepak A Rao, Stephen Kelly, Susan M Goodman, Darren Tabechian, Laura B Hughes, Karen Salomon-Escoto,[...]. Nat Immunol 2019
393
59

Locally renewing resident synovial macrophages provide a protective barrier for the joint.
Stephan Culemann, Anika Grüneboom, José Ángel Nicolás-Ávila, Daniela Weidner, Katrin Franziska Lämmle, Tobias Rothe, Juan A Quintana, Philipp Kirchner, Branislav Krljanac, Martin Eberhardt,[...]. Nature 2019
198
42

Distinct fibroblast subsets drive inflammation and damage in arthritis.
Adam P Croft, Joana Campos, Kathrin Jansen, Jason D Turner, Jennifer Marshall, Moustafa Attar, Loriane Savary, Corinna Wehmeyer, Amy J Naylor, Samuel Kemble,[...]. Nature 2019
293
40

HBEGF+ macrophages in rheumatoid arthritis induce fibroblast invasiveness.
David Kuo, Jennifer Ding, Ian S Cohn, Fan Zhang, Kevin Wei, Deepak A Rao, Cristina Rozo, Upneet K Sokhi, Sara Shanaj, David J Oliver,[...]. Sci Transl Med 2019
80
35

Functionally distinct disease-associated fibroblast subsets in rheumatoid arthritis.
Fumitaka Mizoguchi, Kamil Slowikowski, Kevin Wei, Jennifer L Marshall, Deepak A Rao, Sook Kyung Chang, Hung N Nguyen, Erika H Noss, Jason D Turner, Brandon E Earp,[...]. Nat Commun 2018
222
28

Notch signalling drives synovial fibroblast identity and arthritis pathology.
Kevin Wei, Ilya Korsunsky, Jennifer L Marshall, Anqi Gao, Gerald F M Watts, Triin Major, Adam P Croft, Jordan Watts, Philip E Blazar, Jeffrey K Lange,[...]. Nature 2020
121
24

Synovial cellular and molecular signatures stratify clinical response to csDMARD therapy and predict radiographic progression in early rheumatoid arthritis patients.
Frances Humby, Myles Lewis, Nandhini Ramamoorthi, Jason A Hackney, Michael R Barnes, Michele Bombardieri, A Francesca Setiadi, Stephen Kelly, Fabiola Bene, Maria DiCicco,[...]. Ann Rheum Dis 2019
107
21

Molecular Portraits of Early Rheumatoid Arthritis Identify Clinical and Treatment Response Phenotypes.
Myles J Lewis, Michael R Barnes, Kevin Blighe, Katriona Goldmann, Sharmila Rana, Jason A Hackney, Nandhini Ramamoorthi, Christopher R John, David S Watson, Sarah K Kummerfeld,[...]. Cell Rep 2019
107
21

Nonclassical Ly6C(-) monocytes drive the development of inflammatory arthritis in mice.
Alexander V Misharin, Carla M Cuda, Rana Saber, Jason D Turner, Angelica K Gierut, G Kenneth Haines, Sergejs Berdnikovs, Andrew Filer, Andrew R Clark, Christopher D Buckley,[...]. Cell Rep 2014
185
19

Synovial phenotypes in rheumatoid arthritis correlate with response to biologic therapeutics.
Glynn Dennis, Cécile T J Holweg, Sarah K Kummerfeld, David F Choy, A Francesca Setiadi, Jason A Hackney, Peter M Haverty, Houston Gilbert, Wei Yu Lin, Lauri Diehl,[...]. Arthritis Res Ther 2014
213
18

Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.
William Stephenson, Laura T Donlin, Andrew Butler, Cristina Rozo, Bernadette Bracken, Ali Rashidfarrokhi, Susan M Goodman, Lionel B Ivashkiv, Vivian P Bykerk, Dana E Orange,[...]. Nat Commun 2018
156
18

The pathogenesis of rheumatoid arthritis.
Iain B McInnes, Georg Schett. N Engl J Med 2011
16

Rheumatoid arthritis.
Josef S Smolen, Daniel Aletaha, Anne Barton, Gerd R Burmester, Paul Emery, Gary S Firestein, Arthur Kavanaugh, Iain B McInnes, Daniel H Solomon, Vibeke Strand,[...]. Nat Rev Dis Primers 2018
739
15


Synovial tissue macrophages: a sensitive biomarker for response to treatment in patients with rheumatoid arthritis.
J J Haringman, D M Gerlag, A H Zwinderman, T J M Smeets, M C Kraan, D Baeten, I B McInnes, B Bresnihan, P P Tak. Ann Rheum Dis 2005
299
13

Macrophage heterogeneity in the context of rheumatoid arthritis.
Irina A Udalova, Alberto Mantovani, Marc Feldmann. Nat Rev Rheumatol 2016
292
13

Pathologically expanded peripheral T helper cell subset drives B cells in rheumatoid arthritis.
Deepak A Rao, Michael F Gurish, Jennifer L Marshall, Kamil Slowikowski, Chamith Y Fonseka, Yanyan Liu, Laura T Donlin, Lauren A Henderson, Kevin Wei, Fumitaka Mizoguchi,[...]. Nature 2017
461
13

Synovial tissue macrophages: friend or foe?
Mariola Kurowska-Stolarska, Stefano Alivernini. RMD Open 2017
63
20

The normal synovium.
Malcolm D Smith. Open Rheumatol J 2011
187
12

Synovial tissue signatures enhance clinical classification and prognostic/treatment response algorithms in early inflammatory arthritis and predict requirement for subsequent biological therapy: results from the pathobiology of early arthritis cohort (PEAC).
Gloria Lliso-Ribera, Frances Humby, Myles Lewis, Alessandra Nerviani, Daniele Mauro, Felice Rivellese, Stephen Kelly, Rebecca Hands, Fabiola Bene, Nandhini Ramamoorthi,[...]. Ann Rheum Dis 2019
45
26

New learnings on the pathophysiology of RA from synovial biopsies.
Costantino Pitzalis, Stephen Kelly, Frances Humby. Curr Opin Rheumatol 2013
146
12

Immunopathogenesis of Rheumatoid Arthritis.
Gary S Firestein, Iain B McInnes. Immunity 2017
458
11

Synovial features of patients with rheumatoid arthritis and psoriatic arthritis in clinical and ultrasound remission differ under anti-TNF therapy: a clue to interpret different chances of relapse after clinical remission?
Stefano Alivernini, Barbara Tolusso, Luca Petricca, Laura Bui, Gabriele Di Sante, Giusy Peluso, Roberta Benvenuto, Anna Laura Fedele, Franco Federico, Gianfranco Ferraccioli,[...]. Ann Rheum Dis 2017
43
23

A Pauci-Immune Synovial Pathotype Predicts Inadequate Response to TNFα-Blockade in Rheumatoid Arthritis Patients.
Alessandra Nerviani, Maria Di Cicco, Arti Mahto, Gloria Lliso-Ribera, Felice Rivellese, Georgina Thorborn, Rebecca Hands, Mattia Bellan, Daniele Mauro, Marie-Astrid Boutet,[...]. Front Immunol 2020
29
34

Synovial tissue research: a state-of-the-art review.
Carl Orr, Elsa Vieira-Sousa, David L Boyle, Maya H Buch, Christopher D Buckley, Juan D Cañete, Anca I Catrina, Ernest H S Choy, Paul Emery, Ursula Fearon,[...]. Nat Rev Rheumatol 2017
109
10

RNA Identification of PRIME Cells Predicting Rheumatoid Arthritis Flares.
Dana E Orange, Vicky Yao, Kirsty Sawicka, John Fak, Mayu O Frank, Salina Parveen, Nathalie E Blachere, Caryn Hale, Fan Zhang, Soumya Raychaudhuri,[...]. N Engl J Med 2020
52
19

Rheumatoid arthritis.
Josef S Smolen, Daniel Aletaha, Iain B McInnes. Lancet 2016
10

Rituximab versus tocilizumab in anti-TNF inadequate responder patients with rheumatoid arthritis (R4RA): 16-week outcomes of a stratified, biopsy-driven, multicentre, open-label, phase 4 randomised controlled trial.
Frances Humby, Patrick Durez, Maya H Buch, Myles J Lewis, Hasan Rizvi, Felice Rivellese, Alessandra Nerviani, Giovanni Giorli, Arti Mahto, Carlomaurizio Montecucco,[...]. Lancet 2021
52
19

Tissue-resident macrophages self-maintain locally throughout adult life with minimal contribution from circulating monocytes.
Daigo Hashimoto, Andrew Chow, Clara Noizat, Pearline Teo, Mary Beth Beasley, Marylene Leboeuf, Christian D Becker, Peter See, Jeremy Price, Daniel Lucas,[...]. Immunity 2013
9

Epigenetically-driven anatomical diversity of synovial fibroblasts guides joint-specific fibroblast functions.
Mojca Frank-Bertoncelj, Michelle Trenkmann, Kerstin Klein, Emmanuel Karouzakis, Hubert Rehrauer, Anna Bratus, Christoph Kolling, Maria Armaka, Andrew Filer, Beat A Michel,[...]. Nat Commun 2017
83
10

Methods for high-dimensional analysis of cells dissociated from cryopreserved synovial tissue
Laura T Donlin, Deepak A Rao, Kevin Wei, Kamil Slowikowski, Mandy J McGeachy, Jason D Turner, Nida Meednu, Fumitaka Mizoguchi, Maria Gutierrez-Arcelus, David J Lieb,[...]. Arthritis Res Ther 2018
62
14

Overexpression of toll-like receptors 3 and 4 in synovial tissue from patients with early rheumatoid arthritis: toll-like receptor expression in early and longstanding arthritis.
Caroline Ospelt, Fabia Brentano, Yvonne Rengel, Joanna Stanczyk, Christoph Kolling, Paul P Tak, Renate E Gay, Steffen Gay, Diego Kyburz. Arthritis Rheum 2008
241
9

Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis.
Simon Yona, Ki-Wook Kim, Yochai Wolf, Alexander Mildner, Diana Varol, Michal Breker, Dalit Strauss-Ayali, Sergey Viukov, Martin Guilliams, Alexander Misharin,[...]. Immunity 2013
8

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
8

B Cell Synovitis and Clinical Phenotypes in Rheumatoid Arthritis: Relationship to Disease Stages and Drug Exposure.
F Rivellese, F Humby, S Bugatti, L Fossati-Jimack, H Rizvi, D Lucchesi, G Lliso-Ribera, A Nerviani, R E Hands, G Giorli,[...]. Arthritis Rheumatol 2020
25
32


Synovial tissue transcriptomes of long-standing rheumatoid arthritis are dominated by activated macrophages that reflect microbial stimulation.
Biljana Smiljanovic, Andreas Grützkau, Till Sörensen, Joachim R Grün, Thomas Vogl, Marc Bonin, Pascal Schendel, Bruno Stuhlmüller, Anne Claussnitzer, Sandra Hermann,[...]. Sci Rep 2020
14
57

Synovial fibroblasts of patients with rheumatoid arthritis attach to and invade normal human cartilage when engrafted into SCID mice.
U Müller-Ladner, J Kriegsmann, B N Franklin, S Matsumoto, T Geiler, R E Gay, S Gay. Am J Pathol 1996
474
8

Transcriptional Profiling of Synovial Macrophages Using Minimally Invasive Ultrasound-Guided Synovial Biopsies in Rheumatoid Arthritis.
Arthur M Mandelin, Philip J Homan, Alexander M Shaffer, Carla M Cuda, Salina T Dominguez, Emily Bacalao, Mary Carns, Monique Hinchcliff, Jungwha Lee, Kathleen Aren,[...]. Arthritis Rheumatol 2018
31
22

Tissue-Resident Macrophage Ontogeny and Homeostasis.
Florent Ginhoux, Martin Guilliams. Immunity 2016
825
7

Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.
Yonit Lavin, Deborah Winter, Ronnie Blecher-Gonen, Eyal David, Hadas Keren-Shaul, Miriam Merad, Steffen Jung, Ido Amit. Cell 2014
7

Macrophage activation and polarization: nomenclature and experimental guidelines.
Peter J Murray, Judith E Allen, Subhra K Biswas, Edward A Fisher, Derek W Gilroy, Sergij Goerdt, Siamon Gordon, John A Hamilton, Lionel B Ivashkiv, Toby Lawrence,[...]. Immunity 2014
7

Identification of a novel arthritis-associated osteoclast precursor macrophage regulated by FoxM1.
Tetsuo Hasegawa, Junichi Kikuta, Takao Sudo, Yoshinobu Matsuura, Takahiro Matsui, Szandor Simmons, Kosuke Ebina, Makoto Hirao, Daisuke Okuzaki, Yuichi Yoshida,[...]. Nat Immunol 2019
55
12

Identification of Three Rheumatoid Arthritis Disease Subtypes by Machine Learning Integration of Synovial Histologic Features and RNA Sequencing Data.
Dana E Orange, Phaedra Agius, Edward F DiCarlo, Nicolas Robine, Heather Geiger, Jackie Szymonifka, Michael McNamara, Ryan Cummings, Kathleen M Andersen, Serene Mirza,[...]. Arthritis Rheumatol 2018
86
8

JAK/STAT Blockade Alters Synovial Bioenergetics, Mitochondrial Function, and Proinflammatory Mediators in Rheumatoid Arthritis.
Trudy McGarry, Carl Orr, Sarah Wade, Monika Biniecka, Siobhan Wade, Lorna Gallagher, Candice Low, Douglas J Veale, Ursula Fearon. Arthritis Rheumatol 2018
62
11

Synovial tissue sublining CD68 expression is a biomarker of therapeutic response in rheumatoid arthritis clinical trials: consistency across centers.
Barry Bresnihan, Eliza Pontifex, Rogier M Thurlings, Marjolein Vinkenoog, Hani El-Gabalawy, Ursula Fearon, Oliver Fitzgerald, Danielle M Gerlag, Terence Rooney, Marleen G van de Sande,[...]. J Rheumatol 2009
91
7


2010 Rheumatoid arthritis classification criteria: an American College of Rheumatology/European League Against Rheumatism collaborative initiative.
Daniel Aletaha, Tuhina Neogi, Alan J Silman, Julia Funovits, David T Felson, Clifton O Bingham, Neal S Birnbaum, Gerd R Burmester, Vivian P Bykerk, Marc D Cohen,[...]. Arthritis Rheum 2010
7

Hexokinase 2 as a novel selective metabolic target for rheumatoid arthritis.
Marta F Bustamante, Patricia G Oliveira, Ricard Garcia-Carbonell, Adam P Croft, Jeff M Smith, Ramon L Serrano, Elsa Sanchez-Lopez, Xiao Liu, Tatiana Kisseleva, Nissim Hay,[...]. Ann Rheum Dis 2018
65
10

Two distinct interstitial macrophage populations coexist across tissues in specific subtissular niches.
Svetoslav Chakarov, Hwee Ying Lim, Leonard Tan, Sheau Yng Lim, Peter See, Josephine Lum, Xiao-Meng Zhang, Shihui Foo, Satoshi Nakamizo, Kaibo Duan,[...]. Science 2019
326
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.