A citation-based method for searching scientific literature

Ashwanth C Francis, Mariana Marin, Parmit K Singh, Vasudevan Achuthan, Mathew J Prellberg, Kristina Palermino-Rowland, Shuiyun Lan, Philip R Tedbury, Stefan G Sarafianos, Alan N Engelman, Gregory B Melikyan. Nat Commun 2020
Times Cited: 34







List of co-cited articles
588 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


HIV-1 uncoats in the nucleus near sites of integration.
Ryan C Burdick, Chenglei Li, MohamedHusen Munshi, Jonathan M O Rawson, Kunio Nagashima, Wei-Shau Hu, Vinay K Pathak. Proc Natl Acad Sci U S A 2020
82
76

Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration.
Vasudevan Achuthan, Jill M Perreira, Gregory A Sowd, Maritza Puray-Chavez, William M McDougall, Adriana Paulucci-Holthauzen, Xiaolin Wu, Hind J Fadel, Eric M Poeschla, Asha S Multani,[...]. Cell Host Microbe 2018
78
73

HIV-1 nuclear import in macrophages is regulated by CPSF6-capsid interactions at the nuclear pore complex.
David Alejandro Bejarano, Ke Peng, Vibor Laketa, Kathleen Börner, K Laurence Jost, Bojana Lucic, Bärbel Glass, Marina Lusic, Barbara Müller, Hans-Georg Kräusslich. Elife 2019
77
73

Nuclear pore blockade reveals that HIV-1 completes reverse transcription and uncoating in the nucleus.
Adarsh Dharan, Niklas Bachmann, Sarah Talley, Virginia Zwikelmaier, Edward M Campbell. Nat Microbiol 2020
63
67



Flexible use of nuclear import pathways by HIV-1.
KyeongEun Lee, Zandrea Ambrose, Thomas D Martin, Ilker Oztop, Alok Mulky, John G Julias, Nick Vandegraaff, Joerg G Baumann, Rui Wang, Wendy Yuen,[...]. Cell Host Microbe 2010
302
55

Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly.
Amanda J Price, David A Jacques, William A McEwan, Adam J Fletcher, Sebastian Essig, Jason W Chin, Upul D Halambage, Christopher Aiken, Leo C James. PLoS Pathog 2014
157
52

CPSF6 defines a conserved capsid interface that modulates HIV-1 replication.
Amanda J Price, Adam J Fletcher, Torsten Schaller, Tom Elliott, KyeongEun Lee, Vineet N KewalRamani, Jason W Chin, Greg J Towers, Leo C James. PLoS Pathog 2012
163
52

HIV-1 capsid: the multifaceted key player in HIV-1 infection.
Edward M Campbell, Thomas J Hope. Nat Rev Microbiol 2015
215
52

Direct Visualization of HIV-1 Replication Intermediates Shows that Capsid and CPSF6 Modulate HIV-1 Intra-nuclear Invasion and Integration.
Christopher R Chin, Jill M Perreira, George Savidis, Jocelyn M Portmann, Aaron M Aker, Eric M Feeley, Miles C Smith, Abraham L Brass. Cell Rep 2015
92
47

Remodeling of the Core Leads HIV-1 Preintegration Complex into the Nucleus of Human Lymphocytes.
Guillermo Blanco-Rodriguez, Anastasia Gazi, Blandine Monel, Stella Frabetti, Viviana Scoca, Florian Mueller, Olivier Schwartz, Jacomine Krijnse-Locker, Pierre Charneau, Francesca Di Nunzio. J Virol 2020
31
51

Quantitative microscopy of functional HIV post-entry complexes reveals association of replication with the viral capsid.
Ke Peng, Walter Muranyi, Bärbel Glass, Vibor Laketa, Stephen R Yant, Luong Tsai, Tomas Cihlar, Barbara Müller, Hans-Georg Kräusslich. Elife 2014
119
44

HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
Torsten Schaller, Karen E Ocwieja, Jane Rasaiyaah, Amanda J Price, Troy L Brady, Shoshannah L Roth, Stéphane Hué, Adam J Fletcher, KyeongEun Lee, Vineet N KewalRamani,[...]. PLoS Pathog 2011
316
44

Reconstitution and visualization of HIV-1 capsid-dependent replication and integration in vitro.
Devin E Christensen, Barbie K Ganser-Pornillos, Jarrod S Johnson, Owen Pornillos, Wesley I Sundquist. Science 2020
33
45

Structural basis of HIV-1 capsid recognition by PF74 and CPSF6.
Akash Bhattacharya, Steven L Alam, Thomas Fricke, Kaneil Zadrozny, Jaroslaw Sedzicki, Alexander B Taylor, Borries Demeler, Owen Pornillos, Barbie K Ganser-Pornillos, Felipe Diaz-Griffero,[...]. Proc Natl Acad Sci U S A 2014
140
41

A critical role for alternative polyadenylation factor CPSF6 in targeting HIV-1 integration to transcriptionally active chromatin.
Gregory A Sowd, Erik Serrao, Hao Wang, Weifeng Wang, Hind J Fadel, Eric M Poeschla, Alan N Engelman. Proc Natl Acad Sci U S A 2016
125
41

Dynamics and regulation of nuclear import and nuclear movements of HIV-1 complexes.
Ryan C Burdick, Krista A Delviks-Frankenberry, Jianbo Chen, Sanath K Janaka, Jaya Sastri, Wei-Shau Hu, Vinay K Pathak. PLoS Pathog 2017
61
41

Nup153 Unlocks the Nuclear Pore Complex for HIV-1 Nuclear Translocation in Nondividing Cells.
Cindy Buffone, Alicia Martinez-Lopez, Thomas Fricke, Silvana Opp, Marco Severgnini, Ingrid Cifola, Luca Petiti, Stella Frabetti, Katarzyna Skorupka, Kaneil K Zadrozny,[...]. J Virol 2018
37
41

Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication.
Francesca Di Nunzio, Thomas Fricke, Annarita Miccio, Jose Carlos Valle-Casuso, Patricio Perez, Philippe Souque, Ermanno Rizzi, Marco Severgnini, Fulvio Mavilio, Pierre Charneau,[...]. Virology 2013
99
41

Time-Resolved Imaging of Single HIV-1 Uncoating In Vitro and in Living Cells.
Ashwanth C Francis, Mariana Marin, Jiong Shi, Christopher Aiken, Gregory B Melikyan. PLoS Pathog 2016
70
38

Complementary assays reveal a relationship between HIV-1 uncoating and reverse transcription.
Amy E Hulme, Omar Perez, Thomas J Hope. Proc Natl Acad Sci U S A 2011
176
38

HIV-1 evades innate immune recognition through specific cofactor recruitment.
Jane Rasaiyaah, Choon Ping Tan, Adam J Fletcher, Amanda J Price, Caroline Blondeau, Laura Hilditch, David A Jacques, David L Selwood, Leo C James, Mahdad Noursadeghi,[...]. Nature 2013
295
38

Nuclear Import of the HIV-1 Core Precedes Reverse Transcription and Uncoating.
Anastasia Selyutina, Mirjana Persaud, Kyeongeun Lee, Vineet KewalRamani, Felipe Diaz-Griffero. Cell Rep 2020
32
40

The structure and flexibility of conical HIV-1 capsids determined within intact virions.
Simone Mattei, Bärbel Glass, Wim J H Hagen, Hans-Georg Kräusslich, John A G Briggs. Science 2016
118
38

Transportin 3 promotes a nuclear maturation step required for efficient HIV-1 integration.
Lihong Zhou, Elena Sokolskaja, Clare Jolly, William James, Sally A Cowley, Ariberto Fassati. PLoS Pathog 2011
100
35

Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Gongpu Zhao, Juan R Perilla, Ernest L Yufenyuy, Xin Meng, Bo Chen, Jiying Ning, Jinwoo Ahn, Angela M Gronenborn, Klaus Schulten, Christopher Aiken,[...]. Nature 2013
443
35

Cone-shaped HIV-1 capsids are transported through intact nuclear pores.
Vojtech Zila, Erica Margiotta, Beata Turoňová, Thorsten G Müller, Christian E Zimmerli, Simone Mattei, Matteo Allegretti, Kathleen Börner, Jona Rada, Barbara Müller,[...]. Cell 2021
38
35

Nuclear architecture dictates HIV-1 integration site selection.
Bruna Marini, Attila Kertesz-Farkas, Hashim Ali, Bojana Lucic, Kamil Lisek, Lara Manganaro, Sandor Pongor, Roberto Luzzati, Alessandra Recchia, Fulvio Mavilio,[...]. Nature 2015
188
32

Structural basis for nuclear import of splicing factors by human Transportin 3.
Goedele N Maertens, Nicola J Cook, Weifeng Wang, Stephen Hare, Saumya Shree Gupta, Ilker Öztop, KyeongEun Lee, Valerie E Pye, Ophélie Cosnefroy, Ambrosius P Snijders,[...]. Proc Natl Acad Sci U S A 2014
81
32

HIV-1 integration in the human genome favors active genes and local hotspots.
Astrid R W Schröder, Paul Shinn, Huaming Chen, Charles Berry, Joseph R Ecker, Frederic Bushman. Cell 2002
32

Capsid-CPSF6 Interaction Is Dispensable for HIV-1 Replication in Primary Cells but Is Selected during Virus Passage In Vivo.
Akatsuki Saito, Matthew S Henning, Erik Serrao, Brittany N Dubose, Samantha Teng, Jing Huang, Xiangming Li, Namiko Saito, Saumendra Prasad Roy, Mohammad Adnan Siddiqui,[...]. J Virol 2016
38
32

Analysis of CA Content and CPSF6 Dependence of Early HIV-1 Replication Complexes in SupT1-R5 Cells.
Vojtech Zila, Thorsten G Müller, Vibor Laketa, Barbara Müller, Hans-Georg Kräusslich. mBio 2019
20
55

Early cytoplasmic uncoating is associated with infectivity of HIV-1.
João I Mamede, Gianguido C Cianci, Meegan R Anderson, Thomas J Hope. Proc Natl Acad Sci U S A 2017
68
32


Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication.
Brett M Forshey, Uta von Schwedler, Wesley I Sundquist, Christopher Aiken. J Virol 2002
384
32

Assembly and analysis of conical models for the HIV-1 core.
B K Ganser, S Li, V Y Klishko, J T Finch, W I Sundquist. Science 1999
456
32

Human nucleoporins promote HIV-1 docking at the nuclear pore, nuclear import and integration.
Francesca Di Nunzio, Anne Danckaert, Thomas Fricke, Patricio Perez, Juliette Fernandez, Emmanuelle Perret, Pascal Roux, Spencer Shorte, Pierre Charneau, Felipe Diaz-Griffero,[...]. PLoS One 2012
109
32

TNPO3 protects HIV-1 replication from CPSF6-mediated capsid stabilization in the host cell cytoplasm.
Alberto De Iaco, Federico Santoni, Anne Vannier, Michel Guipponi, Stylianos Antonarakis, Jeremy Luban. Retrovirology 2013
105
32

IP6 is an HIV pocket factor that prevents capsid collapse and promotes DNA synthesis.
Donna L Mallery, Chantal L Márquez, William A McEwan, Claire F Dickson, David A Jacques, Madhanagopal Anandapadamanaban, Katsiaryna Bichel, Gregory J Towers, Adolfo Saiardi, Till Böcking,[...]. Elife 2018
71
29

Structural organization of authentic, mature HIV-1 virions and cores.
John A G Briggs, Thomas Wilk, Reinhold Welker, Hans-Georg Kräusslich, Stephen D Fuller. EMBO J 2003
322
29


Chromatin organization at the nuclear pore favours HIV replication.
Mickaël Lelek, Nicoletta Casartelli, Danilo Pellin, Ermanno Rizzi, Philippe Souque, Marco Severgnini, Clelia Di Serio, Thomas Fricke, Felipe Diaz-Griffero, Christophe Zimmer,[...]. Nat Commun 2015
83
29

Reverse Transcription Mechanically Initiates HIV-1 Capsid Disassembly.
Sanela Rankovic, Janani Varadarajan, Ruben Ramalho, Christopher Aiken, Itay Rousso. J Virol 2017
55
29

HIV-1 uses dynamic capsid pores to import nucleotides and fuel encapsidated DNA synthesis.
David A Jacques, William A McEwan, Laura Hilditch, Amanda J Price, Greg J Towers, Leo C James. Nature 2016
109
29

Transportin-1 binds to the HIV-1 capsid via a nuclear localization signal and triggers uncoating.
Juliette Fernandez, Anthony K Machado, Sébastien Lyonnais, Célia Chamontin, Kathleen Gärtner, Thibaut Léger, Corinne Henriquet, Camille Garcia, Débora M Portilho, Martine Pugnière,[...]. Nat Microbiol 2019
42
29

KIF5B and Nup358 Cooperatively Mediate the Nuclear Import of HIV-1 during Infection.
Adarsh Dharan, Sarah Talley, Abhishek Tripathi, João I Mamede, Matthias Majetschak, Thomas J Hope, Edward M Campbell. PLoS Pathog 2016
57
29

Atomic-level modelling of the HIV capsid.
Owen Pornillos, Barbie K Ganser-Pornillos, Mark Yeager. Nature 2011
251
29

CPSF6-Dependent Targeting of Speckle-Associated Domains Distinguishes Primate from Nonprimate Lentiviral Integration.
Wen Li, Parmit K Singh, Gregory A Sowd, Gregory J Bedwell, Sooin Jang, Vasudevan Achuthan, Amarachi V Oleru, Doris Wong, Hind J Fadel, KyeongEun Lee,[...]. mBio 2020
11
90

HIV-1 capsid undergoes coupled binding and isomerization by the nuclear pore protein NUP358.
Katsiaryna Bichel, Amanda J Price, Torsten Schaller, Greg J Towers, Stefan M V Freund, Leo C James. Retrovirology 2013
68
29


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.