A citation-based method for searching scientific literature

Heba Z Abid, Jennifer McCaffrey, Kaitlin Raseley, Eleanor Young, Katy Lassahn, Dharma Varapula, Harold Riethman, Ming Xiao. BMC Genomics 2020
Times Cited: 4







List of co-cited articles
29 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly.
Ernest T Lam, Alex Hastie, Chin Lin, Dean Ehrlich, Somes K Das, Michael D Austin, Paru Deshpande, Han Cao, Niranjan Nagarajan, Ming Xiao,[...]. Nat Biotechnol 2012
311
100

CRISPR-CAS9 D10A nickase target-specific fluorescent labeling of double strand DNA for whole genome mapping and structural variation analysis.
Jennifer McCaffrey, Justin Sibert, Bin Zhang, Yonggang Zhang, Wenhui Hu, Harold Riethman, Ming Xiao. Nucleic Acids Res 2016
29
75

High-throughput single-molecule telomere characterization.
Jennifer McCaffrey, Eleanor Young, Katy Lassahn, Justin Sibert, Steven Pastor, Harold Riethman, Ming Xiao. Genome Res 2017
21
75

Genome maps across 26 human populations reveal population-specific patterns of structural variation.
Michal Levy-Sakin, Steven Pastor, Yulia Mostovoy, Le Li, Alden K Y Leung, Jennifer McCaffrey, Eleanor Young, Ernest T Lam, Alex R Hastie, Karen H Y Wong,[...]. Nat Commun 2019
45
75

Rapid DNA mapping by fluorescent single molecule detection.
Ming Xiao, Angie Phong, Connie Ha, Ting-Fung Chan, Dongmei Cai, Lucinda Leung, Eunice Wan, Amy L Kistler, Joseph L DeRisi, Paul R Selvin,[...]. Nucleic Acids Res 2007
75
75

High-throughput single-molecule mapping links subtelomeric variants and long-range haplotypes with specific telomeres.
Eleanor Young, Steven Pastor, Ramakrishnan Rajagopalan, Jennifer McCaffrey, Justin Sibert, Angel C Y Mak, Pui-Yan Kwok, Harold Riethman, Ming Xiao. Nucleic Acids Res 2017
14
75

Comprehensive Analysis of Human Subtelomeres by Whole Genome Mapping.
Eleanor Young, Heba Z Abid, Pui-Yan Kwok, Harold Riethman, Ming Xiao. PLoS Genet 2020
11
75

Multi-platform discovery of haplotype-resolved structural variation in human genomes.
Mark J P Chaisson, Ashley D Sanders, Xuefang Zhao, Ankit Malhotra, David Porubsky, Tobias Rausch, Eugene J Gardner, Oscar L Rodriguez, Li Guo, Ryan L Collins,[...]. Nat Commun 2019
213
75

Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays.
Angel C Y Mak, Yvonne Y Y Lai, Ernest T Lam, Tsz-Piu Kwok, Alden K Y Leung, Annie Poon, Yulia Mostovoy, Alex R Hastie, William Stedman, Thomas Anantharaman,[...]. Genetics 2016
75
50

Applications of optical DNA mapping in microbiology.
Diana Bogas, Lena Nyberg, Rui Pacheco, Nuno F Azevedo, Jason P Beech, Margarita Gomila, Jorge Lalucat, Célia M Manaia, Olga C Nunes, Jonas O Tegenfeldt,[...]. Biotechniques 2017
10
50

Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping.
Vilhelm Müller, Fredrika Rajer, Karolin Frykholm, Lena K Nyberg, Saair Quaderi, Joachim Fritzsche, Erik Kristiansson, Tobias Ambjörnsson, Linus Sandegren, Fredrik Westerlund. Sci Rep 2016
33
50

Opportunities and challenges in long-read sequencing data analysis.
Shanika L Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E Ritchie, Quentin Gouil. Genome Biol 2020
125
50


The association of telomere length and cancer: a meta-analysis.
Ingrid M Wentzensen, Lisa Mirabello, Ruth M Pfeiffer, Sharon A Savage. Cancer Epidemiol Biomarkers Prev 2011
320
50


Heterogeneity in telomere length of human chromosomes.
P M Lansdorp, N P Verwoerd, F M van de Rijke, V Dragowska, M T Little, R W Dirks, A K Raap, H J Tanke. Hum Mol Genet 1996
649
50

Telomere length: a review of methods for measurement.
Alison J Montpetit, Areej A Alhareeri, Marty Montpetit, Angela R Starkweather, Lynne W Elmore, Kristin Filler, Lathika Mohanraj, Candace W Burton, Victoria S Menzies, Debra E Lyon,[...]. Nurs Res 2014
131
50

Structural stability and chromosome-specific telomere length is governed by cis-acting determinants in humans.
Bethan Britt-Compton, Jan Rowson, Matthew Locke, Ian Mackenzie, David Kipling, Duncan M Baird. Hum Mol Genet 2006
87
50


Extensive allelic variation and ultrashort telomeres in senescent human cells.
Duncan M Baird, Jan Rowson, David Wynford-Thomas, David Kipling. Nat Genet 2003
355
50

Single molecule linear analysis of DNA in nano-channel labeled with sequence specific fluorescent probes.
Somes K Das, Michael D Austin, Matthew C Akana, Paru Deshpande, Han Cao, Ming Xiao. Nucleic Acids Res 2010
101
50

Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
Peter Ebert, Peter A Audano, Qihui Zhu, Bernardo Rodriguez-Martin, David Porubsky, Marc Jan Bonder, Arvis Sulovari, Jana Ebler, Weichen Zhou, Rebecca Serra Mari,[...]. Science 2021
22
50

Bacteriophage strain typing by rapid single molecule analysis.
Assaf Grunwald, Moran Dahan, Anna Giesbertz, Adam Nilsson, Lena K Nyberg, Elmar Weinhold, Tobias Ambjörnsson, Fredrik Westerlund, Yuval Ebenstein. Nucleic Acids Res 2015
37
50

Customized optical mapping by CRISPR-Cas9 mediated DNA labeling with multiple sgRNAs.
Heba Z Abid, Eleanor Young, Jennifer McCaffrey, Kaitlin Raseley, Dharma Varapula, Hung-Yi Wang, Danielle Piazza, Joshua Mell, Ming Xiao. Nucleic Acids Res 2021
2
100

A single-molecule barcoding system using nanoslits for DNA analysis.
Kyubong Jo, Dalia M Dhingra, Theo Odijk, Juan J de Pablo, Michael D Graham, Rod Runnheim, Dan Forrest, David C Schwartz. Proc Natl Acad Sci U S A 2007
180
50

Integrated analysis of optical mapping and whole-genome sequencing reveals intratumoral genetic heterogeneity in metastatic lung squamous cell carcinoma.
Yizhou Peng, Chongze Yuan, Xiaoting Tao, Yue Zhao, Xingxin Yao, Lingdun Zhuge, Jianwei Huang, Qiang Zheng, Yue Zhang, Hui Hong,[...]. Transl Lung Cancer Res 2020
4
50

Next-generation mapping: a novel approach for detection of pathogenic structural variants with a potential utility in clinical diagnosis.
Hayk Barseghyan, Wilson Tang, Richard T Wang, Miguel Almalvez, Eva Segura, Matthew S Bramble, Allen Lipson, Emilie D Douine, Hane Lee, Emmanuèle C Délot,[...]. Genome Med 2017
35
50

Single-molecule optical mapping enables quantitative measurement of D4Z4 repeats in facioscapulohumeral muscular dystrophy (FSHD).
Yi Dai, Pidong Li, Zhiqiang Wang, Fan Liang, Fan Yang, Li Fang, Yu Huang, Shangzhi Huang, Jiapeng Zhou, Depeng Wang,[...]. J Med Genet 2020
9
50

Long-read single-molecule maps of the functional methylome.
Hila Sharim, Assaf Grunwald, Tslil Gabrieli, Yael Michaeli, Sapir Margalit, Dmitry Torchinsky, Rani Arielly, Gil Nifker, Matyas Juhasz, Felix Gularek,[...]. Genome Res 2019
14
50

Comparison of non-canonical PAMs for CRISPR/Cas9-mediated DNA cleavage in human cells.
Yilan Zhang, Xianglian Ge, Fayu Yang, Liping Zhang, Jiayong Zheng, Xuefang Tan, Zi-Bing Jin, Jia Qu, Feng Gu. Sci Rep 2014
121
25

Transformation of natural genetic variation into Haemophilus influenzae genomes.
Joshua Chang Mell, Svetlana Shumilina, Ira M Hall, Rosemary J Redfield. PLoS Pathog 2011
50
25

High-resolution human genome structure by single-molecule analysis.
Brian Teague, Michael S Waterman, Steven Goldstein, Konstantinos Potamousis, Shiguo Zhou, Susan Reslewic, Deepayan Sarkar, Anton Valouev, Christopher Churas, Jeffrey M Kidd,[...]. Proc Natl Acad Sci U S A 2010
115
25

Optical mapping: a novel, single-molecule approach to genomic analysis.
A Samad, E F Huff, W Cai, D C Schwartz. Genome Res 1995
34
25

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files.
Alexander Payne, Nadine Holmes, Vardhman Rakyan, Matthew Loose. Bioinformatics 2019
82
25

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.
R D Fleischmann, M D Adams, O White, R A Clayton, E F Kirkness, A R Kerlavage, C J Bult, J F Tomb, B A Dougherty, J M Merrick. Science 1995
25

Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases.
Seung Woo Cho, Sojung Kim, Yongsub Kim, Jiyeon Kweon, Heon Seok Kim, Sangsu Bae, Jin-Soo Kim. Genome Res 2014
794
25



The 22q11 low copy repeats are characterized by unprecedented size and structural variability.
Wolfram Demaerel, Yulia Mostovoy, Feyza Yilmaz, Lisanne Vervoort, Steven Pastor, Matthew S Hestand, Ann Swillen, Elfi Vergaelen, Elizabeth A Geiger, Curtis R Coughlin,[...]. Genome Res 2019
16
25

Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon,[...]. Nature 2020
116
25

Nanopore sequencing and assembly of a human genome with ultra-long reads.
Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes,[...]. Nat Biotechnol 2018
596
25

Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome.
Chia-wei Wu, Timothy M Schramm, Shiguo Zhou, David C Schwartz, Adel M Talaat. BMC Genomics 2009
28
25

A second generation human haplotype map of over 3.1 million SNPs.
Kelly A Frazer, Dennis G Ballinger, David R Cox, David A Hinds, Laura L Stuve, Richard A Gibbs, John W Belmont, Andrew Boudreau, Paul Hardenbol, Suzanne M Leal,[...]. Nature 2007
25

An integrated map of genetic variation from 1,092 human genomes.
Goncalo R Abecasis, Adam Auton, Lisa D Brooks, Mark A DePristo, Richard M Durbin, Robert E Handsaker, Hyun Min Kang, Gabor T Marth, Gil A McVean. Nature 2012
25

Transformation of Haemophilus influenzae.
Grant Poje, Rosemary J Redfield. Methods Mol Med 2003
58
25

The human genome project.
M V Olson. Proc Natl Acad Sci U S A 1993
59
25

Direct determination of haplotypes from single DNA molecules.
Ming Xiao, Eunice Wan, Catherine Chu, Wen-Chi Hsueh, Yang Cao, Pui-Yan Kwok. Nat Methods 2009
27
25

General methods for culturing Haemophilus influenzae.
Grant Poje, Rosemary J Redfield. Methods Mol Med 2003
20
25

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus).
Yang Dong, Min Xie, Yu Jiang, Nianqing Xiao, Xiaoyong Du, Wenguang Zhang, Gwenola Tosser-Klopp, Jinhuan Wang, Shuang Yang, Jie Liang,[...]. Nat Biotechnol 2013
266
25

Structural variation in the human genome.
Lars Feuk, Andrew R Carson, Stephen W Scherer. Nat Rev Genet 2006
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.