A citation-based method for searching scientific literature

Jan Zaucha, Michael Heinzinger, A Kulandaisamy, Evans Kataka, Óscar Llorian Salvádor, Petr Popov, Burkhard Rost, M Michael Gromiha, Boris S Zhorov, Dmitrij Frishman. Brief Bioinform 2021
Times Cited: 4







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Pred-MutHTP: Prediction of disease-causing and neutral mutations in human transmembrane proteins.
A Kulandaisamy, Jan Zaucha, Ramasamy Sakthivel, Dmitrij Frishman, M Michael Gromiha. Hum Mutat 2020
7
50

MutHTP: mutations in human transmembrane proteins.
A Kulandaisamy, S Binny Priya, R Sakthivel, Svetlana Tarnovskaya, Ilya Bizin, Peter Hönigschmid, Dmitrij Frishman, M Michael Gromiha. Bioinformatics 2018
13
50

Statistical analysis of disease-causing and neutral mutations in human membrane proteins.
A Kulandaisamy, S Binny Priya, R Sakthivel, Dmitrij Frishman, M Michael Gromiha. Proteins 2019
8
50

How many drug targets are there?
John P Overington, Bissan Al-Lazikani, Andrew L Hopkins. Nat Rev Drug Discov 2006
50

PDBTM: Protein Data Bank of transmembrane proteins after 8 years.
Dániel Kozma, István Simon, Gábor E Tusnády. Nucleic Acids Res 2013
145
25

AggreRATE-Pred: a mathematical model for the prediction of change in aggregation rate upon point mutation.
Puneet Rawat, R Prabakaran, Sandeep Kumar, M Michael Gromiha. Bioinformatics 2020
9
25

Kinetics and thermodynamics of membrane protein folding.
Ernesto A Roman, F Luis González Flecha. Biomolecules 2014
16
25

Stability effects of mutations and protein evolvability.
Nobuhiko Tokuriki, Dan S Tawfik. Curr Opin Struct Biol 2009
414
25

ProTherm, version 4.0: thermodynamic database for proteins and mutants.
K Abdulla Bava, M Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, Akinori Sarai. Nucleic Acids Res 2004
226
25

Documentation of an Imperative To Improve Methods for Predicting Membrane Protein Stability.
Brett M Kroncke, Amanda M Duran, Jeffrey L Mendenhall, Jens Meiler, Jeffrey D Blume, Charles R Sanders. Biochemistry 2016
26
25


Molecular mechanisms of disease-causing missense mutations.
Shannon Stefl, Hafumi Nishi, Marharyta Petukh, Anna R Panchenko, Emil Alexov. J Mol Biol 2013
135
25

Folding rate prediction using total contact distance.
Hongyi Zhou, Yaoqi Zhou. Biophys J 2002
127
25

Correction of both NBD1 energetics and domain interface is required to restore ΔF508 CFTR folding and function.
Wael M Rabeh, Florian Bossard, Haijin Xu, Tsukasa Okiyoneda, Miklos Bagdany, Cory M Mulvihill, Kai Du, Salvatore di Bernardo, Yuhong Liu, Lars Konermann,[...]. Cell 2012
197
25

Discrimination of driver and passenger mutations in epidermal growth factor receptor in cancer.
P Anoosha, Liang-Tsung Huang, R Sakthivel, D Karunagaran, M Michael Gromiha. Mutat Res 2015
19
25

Stabilizing membrane proteins.
J U Bowie. Curr Opin Struct Biol 2001
184
25

DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability.
Carlos Hm Rodrigues, Douglas Ev Pires, David B Ascher. Nucleic Acids Res 2018
276
25

PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality.
Yves Dehouck, Jean Marc Kwasigroch, Dimitri Gilis, Marianne Rooman. BMC Bioinformatics 2011
265
25

Average assignment method for predicting the stability of protein mutants.
K Saraboji, M Michael Gromiha, M N Ponnuswamy. Biopolymers 2006
35
25

Mapping the human membrane proteome: a majority of the human membrane proteins can be classified according to function and evolutionary origin.
Markus Sällman Almén, Karl J V Nordström, Robert Fredriksson, Helgi B Schiöth. BMC Biol 2009
333
25


Stabilization of G protein-coupled receptors by point mutations.
Franziska M Heydenreich, Ziva Vuckovic, Milos Matkovic, Dmitry B Veprintsev. Front Pharmacol 2015
41
25

Internal packing of helical membrane proteins.
M Eilers, S C Shekar, T Shieh, S O Smith, P J Fleming. Proc Natl Acad Sci U S A 2000
211
25


CUPSAT: prediction of protein stability upon point mutations.
Vijaya Parthiban, M Michael Gromiha, Dietmar Schomburg. Nucleic Acids Res 2006
348
25

Folding and stability of membrane transport proteins in vitro.
Nicola J Harris, Paula J Booth. Biochim Biophys Acta 2012
40
25

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure.
Emidio Capriotti, Piero Fariselli, Rita Casadio. Nucleic Acids Res 2005
837
25

PSI-BLAST tutorial.
Medha Bhagwat, L Aravind. Methods Mol Biol 2007
24
25



The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction.
Jonathan R Manning, Emily R Jefferson, Geoffrey J Barton. BMC Bioinformatics 2008
30
25

INPS-MD: a web server to predict stability of protein variants from sequence and structure.
Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio. Bioinformatics 2016
60
25

Kinetic stability of membrane proteins.
F Luis González Flecha. Biophys Rev 2017
8
25

LCP-Tm: an assay to measure and understand stability of membrane proteins in a membrane environment.
Wei Liu, Michael A Hanson, Raymond C Stevens, Vadim Cherezov. Biophys J 2010
40
25



MAESTRO--multi agent stability prediction upon point mutations.
Josef Laimer, Heidi Hofer, Marko Fritz, Stefan Wegenkittl, Peter Lackner. BMC Bioinformatics 2015
112
25

Disease-causing point-mutations in metal-binding domains of Wilson disease protein decrease stability and increase structural dynamics.
Ranjeet Kumar, Candan Ariöz, Yaozong Li, Niklas Bosaeus, Sandra Rocha, Pernilla Wittung-Stafshede. Biometals 2017
9
25

The FoldX web server: an online force field.
Joost Schymkowitz, Jesper Borg, Francois Stricher, Robby Nys, Frederic Rousseau, Luis Serrano. Nucleic Acids Res 2005
25

mCSM: predicting the effects of mutations in proteins using graph-based signatures.
Douglas E V Pires, David B Ascher, Tom L Blundell. Bioinformatics 2014
407
25


AAindex: amino acid index database, progress report 2008.
Shuichi Kawashima, Piotr Pokarowski, Maria Pokarowska, Andrzej Kolinski, Toshiaki Katayama, Minoru Kanehisa. Nucleic Acids Res 2008
541
25


mCSM-membrane: predicting the effects of mutations on transmembrane proteins.
Douglas E V Pires, Carlos H M Rodrigues, David B Ascher. Nucleic Acids Res 2020
12
25

SDM: a server for predicting effects of mutations on protein stability.
Arun Prasad Pandurangan, Bernardo Ochoa-Montaño, David B Ascher, Tom L Blundell. Nucleic Acids Res 2017
190
25

Disease-related misassembly of membrane proteins.
Charles R Sanders, Jeffrey K Myers. Annu Rev Biophys Biomol Struct 2004
184
25

Measuring membrane protein stability under native conditions.
Yu-Chu Chang, James U Bowie. Proc Natl Acad Sci U S A 2014
34
25


Inter-residue interactions in protein folding and stability.
M Michael Gromiha, S Selvaraj. Prog Biophys Mol Biol 2004
180
25



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.