A citation-based method for searching scientific literature

Shafi Mahmud, Mohammad Abu Raihan Uddin, Meemtaheena Zaman, Khaled Mahmud Sujon, Md Ekhtiar Rahman, Mobasshir Noor Shehab, Ariful Islam, Md Wasim Alom, Al Amin, Al Shahriar Akash, Md Abu Saleh. J Biomol Struct Dyn 2021
Times Cited: 19







List of co-cited articles
122 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved α-ketoamide inhibitors.
Linlin Zhang, Daizong Lin, Xinyuanyuan Sun, Ute Curth, Christian Drosten, Lucie Sauerhering, Stephan Becker, Katharina Rox, Rolf Hilgenfeld. Science 2020
47

New ways to boost molecular dynamics simulations.
Elmar Krieger, Gert Vriend. J Comput Chem 2015
314
36

Structure of Mpro from SARS-CoV-2 and discovery of its inhibitors.
Zhenming Jin, Xiaoyu Du, Yechun Xu, Yongqiang Deng, Meiqin Liu, Yao Zhao, Bing Zhang, Xiaofeng Li, Leike Zhang, Chao Peng,[...]. Nature 2020
31

Comparative molecular investigation of the potential inhibitors against SARS-CoV-2 main protease: a molecular docking study.
Md Arif Khan, Shafi Mahmud, A S M Rubayet Ul Alam, Md Ekhtiar Rahman, Firoz Ahmed, Mohammed Rahmatullah. J Biomol Struct Dyn 2021
19
31

Virtual screening and molecular dynamics simulation study of plant-derived compounds to identify potential inhibitors of main protease from SARS-CoV-2.
Shafi Mahmud, Mohammad Abu Raihan Uddin, Gobindo Kumar Paul, Mst Sharmin Sultana Shimu, Saiful Islam, Ekhtiar Rahman, Ariful Islam, Md Samiul Islam, Maria Meha Promi, Talha Bin Emran,[...]. Brief Bioinform 2021
27
31

A molecular modelling approach for identifying antiviral selenium-containing heterocyclic compounds that inhibit the main protease of SARS-CoV-2: an in silico investigation.
Ahmed Rakib, Zulkar Nain, Saad Ahmed Sami, Shafi Mahmud, Ashiqul Islam, Shahriar Ahmed, Adnan Bin Faisul Siddiqui, S M Omar Faruque Babu, Payar Hossain, Asif Shahriar,[...]. Brief Bioinform 2021
24
31

Structural basis of SARS-CoV-2 3CLpro and anti-COVID-19 drug discovery from medicinal plants.
Muhammad Tahir Ul Qamar, Safar M Alqahtani, Mubarak A Alamri, Ling-Ling Chen. J Pharm Anal 2020
396
26


Structure-based design of antiviral drug candidates targeting the SARS-CoV-2 main protease.
Wenhao Dai, Bing Zhang, Xia-Ming Jiang, Haixia Su, Jian Li, Yao Zhao, Xiong Xie, Zhenming Jin, Jingjing Peng, Fengjiang Liu,[...]. Science 2020
584
26

Exploring the potent inhibitors and binding modes of phospholipase A2 through in silico investigation.
Shafi Mahmud, Md Rimon Parves, Yasir Mohamed Riza, Khaled Mahmud Sujon, Suvendu Ray, Fahmida Alam Tithi, Zannati Ferdous Zaoti, Sanjida Alam, N Absar. J Biomol Struct Dyn 2020
11
45


Fast empirical pKa prediction by Ewald summation.
Elmar Krieger, Jens E Nielsen, Chris A E M Spronk, Gert Vriend. J Mol Graph Model 2006
199
26


PubChem Substance and Compound databases.
Sunghwan Kim, Paul A Thiessen, Evan E Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A Shoemaker,[...]. Nucleic Acids Res 2016
26


Drug Repurposing Approach against Novel Coronavirus Disease (COVID-19) through Virtual Screening Targeting SARS-CoV-2 Main Protease.
Kamrul Hasan Chowdhury, Md Riad Chowdhury, Shafi Mahmud, Abu Montakim Tareq, Nujhat Binte Hanif, Naureen Banu, A S M Ali Reza, Talha Bin Emran, Jesus Simal-Gandara. Biology (Basel) 2020
27
26

Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain.
Kanchan Anand, Gottfried J Palm, Jeroen R Mesters, Stuart G Siddell, John Ziebuhr, Rolf Hilgenfeld. EMBO J 2002
376
21

Potential inhibitors of coronavirus 3-chymotrypsin-like protease (3CLpro): an in silico screening of alkaloids and terpenoids from African medicinal plants.
Gideon A Gyebi, Olalekan B Ogunro, Adegbenro P Adegunloye, Oludare M Ogunyemi, Saheed O Afolabi. J Biomol Struct Dyn 2021
91
21




admetSAR: a comprehensive source and free tool for assessment of chemical ADMET properties.
Feixiong Cheng, Weihua Li, Yadi Zhou, Jie Shen, Zengrui Wu, Guixia Liu, Philip W Lee, Yun Tang. J Chem Inf Model 2012
682
21

Chemical Profiles and Pharmacological Properties with in Silico Studies on Elatostema papillosum Wedd.
Md Zia Uddin, Arkajyoti Paul, Ahmed Rakib, Saad Ahmed Sami, Shafi Mahmud, Md Sohel Rana, Shahadat Hossain, Abu Montakim Tareq, Mycal Dutta, Talha Bin Emran,[...]. Molecules 2021
12
33

Extensive immunoinformatics study for the prediction of novel peptide-based epitope vaccine with docking confirmation against envelope protein of Chikungunya virus: a computational biology approach.
Syed Shahariar Bappy, Sorna Sultana, Juthi Adhikari, Shafi Mahmud, Md Arif Khan, K M Kaderi Kibria, Md Masuder Rahman, Abu Zaffar Shibly. J Biomol Struct Dyn 2021
18
22


YASARA: A Tool to Obtain Structural Guidance in Biocatalytic Investigations.
Henrik Land, Maria Svedendahl Humble. Methods Mol Biol 2018
97
21

GROMACS: fast, flexible, and free.
David Van Der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E Mark, Herman J C Berendsen. J Comput Chem 2005
15

Putative Inhibitors of SARS-CoV-2 Main Protease from A Library of Marine Natural Products: A Virtual Screening and Molecular Modeling Study.
Davide Gentile, Vincenzo Patamia, Angela Scala, Maria Teresa Sciortino, Anna Piperno, Antonio Rescifina. Mar Drugs 2020
132
15

Moroccan Medicinal plants as inhibitors against SARS-CoV-2 main protease: Computational investigations.
I Aanouz, A Belhassan, K El-Khatabi, T Lakhlifi, M El-Ldrissi, M Bouachrine. J Biomol Struct Dyn 2021
144
15

A pneumonia outbreak associated with a new coronavirus of probable bat origin.
Peng Zhou, Xing-Lou Yang, Xian-Guang Wang, Ben Hu, Lei Zhang, Wei Zhang, Hao-Rui Si, Yan Zhu, Bei Li, Chao-Lin Huang,[...]. Nature 2020
15

Analysis of therapeutic targets for SARS-CoV-2 and discovery of potential drugs by computational methods.
Canrong Wu, Yang Liu, Yueying Yang, Peng Zhang, Wu Zhong, Yali Wang, Qiqi Wang, Yang Xu, Mingxue Li, Xingzhou Li,[...]. Acta Pharm Sin B 2020
939
15

Coronavirus main proteinase (3CLpro) structure: basis for design of anti-SARS drugs.
Kanchan Anand, John Ziebuhr, Parvesh Wadhwani, Jeroen R Mesters, Rolf Hilgenfeld. Science 2003
975
15


Discovery of potential multi-target-directed ligands by targeting host-specific SARS-CoV-2 structurally conserved main protease.
Rakesh S Joshi, Shounak S Jagdale, Sneha B Bansode, S Shiva Shankar, Meenakshi B Tellis, Vaibhav Kumar Pandya, Anita Chugh, Ashok P Giri, Mahesh J Kulkarni. J Biomol Struct Dyn 2021
153
15


Scutellaria baicalensis extract and baicalein inhibit replication of SARS-CoV-2 and its 3C-like protease in vitro.
Hongbo Liu, Fei Ye, Qi Sun, Hao Liang, Chunmei Li, Siyang Li, Roujian Lu, Baoying Huang, Wenjie Tan, Luhua Lai. J Enzyme Inhib Med Chem 2021
53
15

Evaluation of polyphenols from Broussonetia papyrifera as coronavirus protease inhibitors.
Ji-Young Park, Heung Joo Yuk, Hyung Won Ryu, Su Hwan Lim, Kyung Su Kim, Ki Hun Park, Young Bae Ryu, Woo Song Lee. J Enzyme Inhib Med Chem 2017
129
15

Lead- and drug-like compounds: the rule-of-five revolution.
Christopher A Lipinski. Drug Discov Today Technol 2004
15

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.
Garrett M Morris, Ruth Huey, William Lindstrom, Michel F Sanner, Richard K Belew, David S Goodsell, Arthur J Olson. J Comput Chem 2009
15

Identification of bioactive molecules from tea plant as SARS-CoV-2 main protease inhibitors.
Vijay Kumar Bhardwaj, Rahul Singh, Jatin Sharma, Vidya Rajendran, Rituraj Purohit, Sanjay Kumar. J Biomol Struct Dyn 2021
143
15


Unravelling lead antiviral phytochemicals for the inhibition of SARS-CoV-2 Mpro enzyme through in silico approach.
Arun Bahadur Gurung, Mohammad Ajmal Ali, Joongku Lee, Mohammad Abul Farah, Khalid Mashay Al-Anazi. Life Sci 2020
58
15

Drug repurposing for coronavirus (COVID-19): in silico screening of known drugs against coronavirus 3CL hydrolase and protease enzymes.
Ammar D Elmezayen, Anas Al-Obaidi, Alp Tegin Şahin, Kemal Yelekçi. J Biomol Struct Dyn 2021
195
15

Inhibition of SARS-CoV 3CL protease by flavonoids.
Seri Jo, Suwon Kim, Dong Hae Shin, Mi-Sun Kim. J Enzyme Inhib Med Chem 2020
268
15

Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules.
J L Sussman, D Lin, J Jiang, N O Manning, J Prilusky, O Ritter, E E Abola. Acta Crystallogr D Biol Crystallogr 1998
362
15


The SARS-CoV-2 main protease as drug target.
Sven Ullrich, Christoph Nitsche. Bioorg Med Chem Lett 2020
212
15

Epitope-Based Immunoinformatics Approach on Nucleocapsid Protein of Severe Acute Respiratory Syndrome-Coronavirus-2.
Ahmed Rakib, Saad Ahmed Sami, Md Ashiqul Islam, Shahriar Ahmed, Farhana Binta Faiz, Bibi Humayra Khanam, Kay Kay Shain Marma, Maksuda Rahman, Mir Muhammad Nasir Uddin, Firzan Nainu,[...]. Molecules 2020
20
15

Immunoinformatics-guided design of an epitope-based vaccine against severe acute respiratory syndrome coronavirus 2 spike glycoprotein.
Ahmed Rakib, Saad Ahmed Sami, Nusrat Jahan Mimi, Md Mustafiz Chowdhury, Taslima Akter Eva, Firzan Nainu, Arkajyoti Paul, Asif Shahriar, Abu Montakim Tareq, Nazim Uddin Emon,[...]. Comput Biol Med 2020
38
15

Biochemical and Computational Approach of Selected Phytocompounds from Tinospora crispa in the Management of COVID-19.
Ahmed Rakib, Arkajyoti Paul, Md Nazim Uddin Chy, Saad Ahmed Sami, Sumit Kumar Baral, Mohuya Majumder, Abu Montakim Tareq, Mohammad Nurul Amin, Asif Shahriar, Md Zia Uddin,[...]. Molecules 2020
26
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.