A citation-based method for searching scientific literature

Ryan P Goguen, Anne Gatignol, Robert J Scarborough. Methods Mol Biol 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Characterization of a potent non-cytotoxic shRNA directed to the HIV-1 co-receptor CCR5.
Saki Shimizu, Masakazu Kamata, Panyamol Kittipongdaja, Kevin N Chen, Sanggu Kim, Shen Pang, Joshua Boyer, F Xiao-Feng Qin, Dong Sung An, Irvin Sy Chen. Genet Vaccines Ther 2009
33
100

A competitive cell growth assay for the detection of subtle effects of gene transduction on cell proliferation.
J J M Eekels, A O Pasternak, A M Schut, D Geerts, R E Jeeninga, B Berkhout. Gene Ther 2012
30
100

Stable RNA interference: comparison of U6 and H1 promoters in endothelial cells and in mouse brain.
Petri I Mäkinen, Jonna K Koponen, Anna-Mari Kärkkäinen, Tarja M Malm, Kati H Pulkkinen, Jari Koistinaho, Mikko P Turunen, Seppo Ylä-Herttuala. J Gene Med 2006
87
100

Improvement of the CRISPR-Cpf1 system with ribozyme-processed crRNA.
Zongliang Gao, Elena Herrera-Carrillo, Ben Berkhout. RNA Biol 2018
17
100

Pol III Promoters to Express Small RNAs: Delineation of Transcription Initiation.
Hongming Ma, Yonggan Wu, Ying Dang, Jang-Gi Choi, Junli Zhang, Haoquan Wu. Mol Ther Nucleic Acids 2014
58
100

HIV-1 remission following CCR5Δ32/Δ32 haematopoietic stem-cell transplantation.
Ravindra K Gupta, Sultan Abdul-Jawad, Laura E McCoy, Hoi Ping Mok, Dimitra Peppa, Maria Salgado, Javier Martinez-Picado, Monique Nijhuis, Annemarie M J Wensing, Helen Lee,[...]. Nature 2019
235
100


RNA-based therapeutics: current progress and future prospects.
John C Burnett, John J Rossi. Chem Biol 2012
569
100

Achieving a cure for HIV infection: do we have reasons to be optimistic?
Valentin Le Douce, Andrea Janossy, Houda Hallay, Sultan Ali, Raphael Riclet, Olivier Rohr, Christian Schwartz. J Antimicrob Chemother 2012
40
100

Aptamers as therapeutics.
Anthony D Keefe, Supriya Pai, Andrew Ellington. Nat Rev Drug Discov 2010
100

Inhibition of HIV-1 infection by lentiviral vectors expressing Pol III-promoted anti-HIV RNAs.
Ming-Jie Li, Gerhard Bauer, Alessandro Michienzi, Jiing-Kuan Yee, Nan-Sook Lee, James Kim, Shirley Li, Daniela Castanotto, John Zaia, John J Rossi. Mol Ther 2003
131
100

Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells.
Nan Sook Lee, Taikoh Dohjima, Gerhard Bauer, Haitang Li, Ming-Jie Li, Ali Ehsani, Paul Salvaterra, John Rossi. Nat Biotechnol 2002
777
100


Optimization and functional effects of stable short hairpin RNA expression in primary human lymphocytes via lentiviral vectors.
Dong Sung An, F Xiao-Feng Qin, Vincent C Auyeung, Si Hua Mao, Sam K P Kung, David Baltimore, Irvin S Y Chen. Mol Ther 2006
122
100

Phase 2 gene therapy trial of an anti-HIV ribozyme in autologous CD34+ cells.
Ronald T Mitsuyasu, Thomas C Merigan, Andrew Carr, Jerome A Zack, Mark A Winters, Cassy Workman, Mark Bloch, Jacob Lalezari, Stephen Becker, Lorna Thornton,[...]. Nat Med 2009
182
100

Development of Lentiviral Vectors Simultaneously Expressing Multiple siRNAs Against CCR5, vif and tat/rev Genes for an HIV-1 Gene Therapy Approach.
Francesca Spanevello, Arianna Calistri, Claudia Del Vecchio, Barbara Mantelli, Chiara Frasson, Giuseppe Basso, Giorgio Palù, Marina Cavazzana, Cristina Parolin. Mol Ther Nucleic Acids 2016
13
100


Long-term survival and concomitant gene expression of ribozyme-transduced CD4+ T-lymphocytes in HIV-infected patients.
Janet L Macpherson, Maureen P Boyd, Allison J Arndt, Alison V Todd, Gregory C Fanning, Julie A Ely, Fiona Elliott, Alison Knop, Mitch Raponi, John Murray,[...]. J Gene Med 2005
73
100

Incorporation of aptamers in the terminal loop of shRNAs yields an effective and novel combinatorial targeting strategy.
Ka Ming Pang, Daniela Castanotto, Haitang Li, Lisa Scherer, John J Rossi. Nucleic Acids Res 2018
13
100

[A second patient cured of HIV infection: hopes and limitations].
Robert J Scarborough, Ryan P Goguen, Anne Gatignol. Virologie (Montrouge) 2019
5
100

Identification and characterization of a highly efficient anti-HIV pol hammerhead ribozyme.
Thea Müller-Kuller, Gianni Capalbo, Christian Klebba, Joachim W Engels, Stefan A Klein. Oligonucleotides 2009
10
100

RNA Interference Therapies for an HIV-1 Functional Cure.
Robert J Scarborough, Anne Gatignol. Viruses 2017
15
100

Endogenous MCM7 microRNA cluster as a novel platform to multiplex small interfering and nucleolar RNAs for combinational HIV-1 gene therapy.
Janet Chung, Jane Zhang, Haitang Li, Dominique L Ouellet, David L DiGiusto, John J Rossi. Hum Gene Ther 2012
18
100

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
100

A clinical trial of retroviral-mediated transfer of a rev-responsive element decoy gene into CD34(+) cells from the bone marrow of human immunodeficiency virus-1-infected children.
D B Kohn, G Bauer, C R Rice, J C Rothschild, D A Carbonaro, P Valdez, Q l Hao, C Zhou, I Bahner, K Kearns,[...]. Blood 1999
162
100

Expression profiling reveals off-target gene regulation by RNAi.
Aimee L Jackson, Steven R Bartz, Janell Schelter, Sumire V Kobayashi, Julja Burchard, Mao Mao, Bin Li, Guy Cavet, Peter S Linsley. Nat Biotechnol 2003
100

Evaluation of the Efficacy And Toxicity of RNAs Targeting HIV-1 Production for Use in Gene or Drug Therapy.
Robert J Scarborough, Kelsey L Adams, Olivier Del Corpo, Aïcha Daher, Anne Gatignol. J Vis Exp 2016
4
100

Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells.
Peter C Scacheri, Orit Rozenblatt-Rosen, Natasha J Caplen, Tyra G Wolfsberg, Lowell Umayam, Jeffrey C Lee, Christina M Hughes, Kalai Selvi Shanmugam, Arindam Bhattacharjee, Matthew Meyerson,[...]. Proc Natl Acad Sci U S A 2004
442
100

Recruitment of RNA polymerase III to its target promoters.
Laura Schramm, Nouria Hernandez. Genes Dev 2002
407
100


Structural basis for double-stranded RNA processing by Dicer.
Ian J Macrae, Kaihong Zhou, Fei Li, Adrian Repic, Angela N Brooks, W Zacheus Cande, Paul D Adams, Jennifer A Doudna. Science 2006
586
100

Delineation of the Exact Transcription Termination Signal for Type 3 Polymerase III.
Zongliang Gao, Elena Herrera-Carrillo, Ben Berkhout. Mol Ther Nucleic Acids 2018
31
100

Stable reduction of CCR5 by RNAi through hematopoietic stem cell transplant in non-human primates.
Dong Sung An, Robert E Donahue, Masakazu Kamata, Betty Poon, Mark Metzger, Si-Hua Mao, Aylin Bonifacino, Allen E Krouse, Jean-Luc Darlix, David Baltimore,[...]. Proc Natl Acad Sci U S A 2007
123
100

Genetic therapies against HIV.
John J Rossi, Carl H June, Donald B Kohn. Nat Biotechnol 2007
166
100

Higher Cytopathic Effects of a Zika Virus Brazilian Isolate from Bahia Compared to a Canadian-Imported Thai Strain.
Sergio P Alpuche-Lazcano, Craig R McCullogh, Olivier Del Corpo, Elodie Rance, Robert J Scarborough, Andrew J Mouland, Selena M Sagan, Mauro M Teixeira, Anne Gatignol. Viruses 2018
15
100

Studies of efficacy and liver toxicity related to adeno-associated virus-mediated RNA interference.
Cheng-Pu Sun, Tzu-Hui Wu, Chun-Chi Chen, Ping-Yi Wu, Yao-Ming Shih, Koichi Tsuneyama, Mi-Hua Tao. Hum Gene Ther 2013
15
100

Long-term control of HIV by CCR5 Delta32/Delta32 stem-cell transplantation.
Gero Hütter, Daniel Nowak, Maximilian Mossner, Susanne Ganepola, Arne Müssig, Kristina Allers, Thomas Schneider, Jörg Hofmann, Claudia Kücherer, Olga Blau,[...]. N Engl J Med 2009
100

RNA-based gene therapy for HIV with lentiviral vector-modified CD34(+) cells in patients undergoing transplantation for AIDS-related lymphoma.
David L DiGiusto, Amrita Krishnan, Lijing Li, Haitang Li, Shirley Li, Anitha Rao, Shu Mi, Priscilla Yam, Sherri Stinson, Michael Kalos,[...]. Sci Transl Med 2010
276
100

Structure of eukaryotic RNA polymerases.
P Cramer, K-J Armache, S Baumli, S Benkert, F Brueckner, C Buchen, G E Damsma, S Dengl, S R Geiger, A J Jasiak,[...]. Annu Rev Biophys 2008
185
100

Inhibiting HIV-1 infection in human T cells by lentiviral-mediated delivery of small interfering RNA against CCR5.
Xiao-Feng Qin, Dong Sung An, Irvin S Y Chen, David Baltimore. Proc Natl Acad Sci U S A 2003
581
100

Design of HIV vectors for efficient gene delivery into human hematopoietic cells.
Priscilla Y Yam, Shulian Li, Jerry Wu, Jun Hu, John A Zaia, Jiing-Kuan Yee. Mol Ther 2002
110
100

Dicer recognizes the 5' end of RNA for efficient and accurate processing.
Jong-Eun Park, Inha Heo, Yuan Tian, Dhirendra K Simanshu, Hyeshik Chang, David Jee, Dinshaw J Patel, V Narry Kim. Nature 2011
297
100

Design and evaluation of clinically relevant SOFA-HDV ribozymes targeting HIV RNA.
Robert J Scarborough, Michel V Lévesque, Jean-Pierre Perreault, Anne Gatignol. Methods Mol Biol 2014
12
100

A Conserved Target Site in HIV-1 Gag RNA is Accessible to Inhibition by Both an HDV Ribozyme and a Short Hairpin RNA.
Robert J Scarborough, Michel V Lévesque, Etienne Boudrias-Dalle, Ian C Chute, Sylvanne M Daniels, Rodney J Ouellette, Jean-Pierre Perreault, Anne Gatignol. Mol Ther Nucleic Acids 2014
12
100


A U1i RNA that Enhances HIV-1 RNA Splicing with an Elongated Recognition Domain Is an Optimal Candidate for Combination HIV-1 Gene Therapy.
Olivier Del Corpo, Ryan P Goguen, Camille M G Malard, Aïcha Daher, Susan Colby-Germinario, Robert J Scarborough, Anne Gatignol. Mol Ther Nucleic Acids 2019
6
100

Induction of an interferon response by RNAi vectors in mammalian cells.
Alan J Bridge, Stephanie Pebernard, Annick Ducraux, Anne-Laure Nicoulaz, Richard Iggo. Nat Genet 2003
776
100

Sequence-non-specific effects generated by various types of RNA interference triggers.
Marta Olejniczak, Martyna O Urbanek, Edyta Jaworska, Lukasz Witucki, Michal W Szczesniak, Izabela Makalowska, Wlodzimierz J Krzyzosiak. Biochim Biophys Acta 2016
10
100

Lentiviral vector design for multiple shRNA expression and durable HIV-1 inhibition.
Olivier ter Brake, Karen 't Hooft, Ying Poi Liu, Mireille Centlivre, Karin Jasmijn von Eije, Ben Berkhout. Mol Ther 2008
151
100

Engineering Cellular Resistance to HIV-1 Infection In Vivo Using a Dual Therapeutic Lentiviral Vector.
Bryan P Burke, Bernard R Levin, Jane Zhang, Anna Sahakyan, Joshua Boyer, Maria V Carroll, Joanna Camba Colón, Naomi Keech, Valerie Rezek, Gregory Bristol,[...]. Mol Ther Nucleic Acids 2015
41
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.