A citation-based method for searching scientific literature

Tuomo Mäki-Marttunen, Nicolangelo Iannella, Andrew G Edwards, Gaute T Einevoll, Kim T Blackwell. Elife 2020
Times Cited: 10







List of co-cited articles
58 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches.
Jeanette Hellgren Kotaleski, Kim T Blackwell. Nat Rev Neurosci 2010
112
40

A unified model of NMDA receptor-dependent bidirectional synaptic plasticity.
Harel Z Shouval, Mark F Bear, Leon N Cooper. Proc Natl Acad Sci U S A 2002
336
40

A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity.
Takashi Nakano, Tomokazu Doi, Junichiro Yoshimoto, Kenji Doya. PLoS Comput Biol 2010
57
30

Molecular mechanisms underlying striatal synaptic plasticity: relevance to chronic alcohol consumption and seeking.
Kim T Blackwell, Armando G Salinas, Parul Tewatia, Brad English, Jeanette Hellgren Kotaleski, David M Lovinger. Eur J Neurosci 2019
13
30



Molecular switches at the synapse emerge from receptor and kinase traffic.
Arnold Hayer, Upinder S Bhalla. PLoS Comput Biol 2005
82
30

FAST MONTE CARLO SIMULATION METHODS FOR BIOLOGICAL REACTION-DIFFUSION SYSTEMS IN SOLUTION AND ON SURFACES.
Rex A Kerr, Thomas M Bartol, Boris Kaminsky, Markus Dittrich, Jen-Chien Jack Chang, Scott B Baden, Terrence J Sejnowski, Joel R Stiles. SIAM J Sci Comput 2008
184
30


Rate, timing, and cooperativity jointly determine cortical synaptic plasticity.
P J Sjöström, G G Turrigiano, S B Nelson. Neuron 2001
650
20

Neuromodulators control the polarity of spike-timing-dependent synaptic plasticity.
Geun Hee Seol, Jokubas Ziburkus, ShiYong Huang, Lihua Song, In Tae Kim, Kogo Takamiya, Richard L Huganir, Hey-Kyoung Lee, Alfredo Kirkwood. Neuron 2007
274
20

Learning rules for spike timing-dependent plasticity depend on dendritic synapse location.
Johannes J Letzkus, Björn M Kampa, Greg J Stuart. J Neurosci 2006
184
20

Regulation of synaptic efficacy by coincidence of postsynaptic APs and EPSPs.
H Markram, J Lübke, M Frotscher, B Sakmann. Science 1997
20

Synaptic plasticity rules with physiological calcium levels.
Yanis Inglebert, Johnatan Aljadeff, Nicolas Brunel, Dominique Debanne. Proc Natl Acad Sci U S A 2020
14
20




Behavioral time scale synaptic plasticity underlies CA1 place fields.
Katie C Bittner, Aaron D Milstein, Christine Grienberger, Sandro Romani, Jeffrey C Magee. Science 2017
202
20

Spine Ca2+ signaling in spike-timing-dependent plasticity.
Thomas Nevian, Bert Sakmann. J Neurosci 2006
307
20

Dopamine D1/D5 receptor activation reverses NMDA receptor-dependent long-term depression in rat hippocampus.
Bruce G Mockett, Diane Guévremont, Joanna M Williams, Wickliffe C Abraham. J Neurosci 2007
36
20

β-adrenergic signaling broadly contributes to LTP induction.
Joanna Jȩdrzejewska-Szmek, Vincent Luczak, Ted Abel, Kim T Blackwell. PLoS Comput Biol 2017
17
20


Sequential neuromodulation of Hebbian plasticity offers mechanism for effective reward-based navigation.
Zuzanna Brzosko, Sara Zannone, Wolfram Schultz, Claudia Clopath, Ole Paulsen. Elife 2017
38
20

LTP and LTD: an embarrassment of riches.
Robert C Malenka, Mark F Bear. Neuron 2004
20



Mechanical Principles Governing the Shapes of Dendritic Spines.
Haleh Alimohamadi, Miriam K Bell, Shelley Halpain, Padmini Rangamani. Front Physiol 2021
5
40


Brian 2, an intuitive and efficient neural simulator.
Marcel Stimberg, Romain Brette, Dan Fm Goodman. Elife 2019
83
20

Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium.
Miriam Bell, Tom Bartol, Terrence Sejnowski, Padmini Rangamani. J Gen Physiol 2019
25
20

Biophysical model of the role of actin remodeling on dendritic spine morphology.
C A Miermans, R P T Kusters, C C Hoogenraad, C Storm. PLoS One 2017
29
20

STEPS: efficient simulation of stochastic reaction-diffusion models in realistic morphologies.
Iain Hepburn, Weiliang Chen, Stefan Wils, Erik De Schutter. BMC Syst Biol 2012
73
20

Structure-stability-function relationships of dendritic spines.
Haruo Kasai, Masanori Matsuzaki, Jun Noguchi, Nobuaki Yasumatsu, Hiroyuki Nakahara. Trends Neurosci 2003
598
20

Geometric principles of second messenger dynamics in dendritic spines.
Andrea Cugno, Thomas M Bartol, Terrence J Sejnowski, Ravi Iyengar, Padmini Rangamani. Sci Rep 2019
17
20

3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries.
Christopher T Lee, Justin G Laughlin, Nils Angliviel de La Beaumelle, Rommie E Amaro, J Andrew McCammon, Ravi Ramamoorthi, Michael Holst, Padmini Rangamani. PLoS Comput Biol 2020
15
20


Ultrastructure of dendritic spines: correlation between synaptic and spine morphologies.
Jon I Arellano, Ruth Benavides-Piccione, Javier Defelipe, Rafael Yuste. Front Neurosci 2007
312
20

Postsynaptic signaling during plasticity of dendritic spines.
Hideji Murakoshi, Ryohei Yasuda. Trends Neurosci 2012
107
20

A general computational framework for modeling cellular structure and function.
J Schaff, C C Fink, B Slepchenko, J H Carson, L M Loew. Biophys J 1997
148
20

Ultrastructural analysis of dendritic spine necks reveals a continuum of spine morphologies.
Netanel Ofer, Daniel R Berger, Narayanan Kasthuri, Jeff W Lichtman, Rafael Yuste. Dev Neurobiol 2021
9
22

Modeling the Shape of Synaptic Spines by Their Actin Dynamics.
Mayte Bonilla-Quintana, Florentin Wörgötter, Christian Tetzlaff, Michael Fauth. Front Synaptic Neurosci 2020
7
28

Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator.
Mariam Ordyan, Tom Bartol, Mary Kennedy, Padmini Rangamani, Terrence Sejnowski. PLoS Comput Biol 2020
6
33


COPASI--a COmplex PAthway SImulator.
Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer. Bioinformatics 2006
20

Computational Modeling Reveals Frequency Modulation of Calcium-cAMP/PKA Pathway in Dendritic Spines.
Donya Ohadi, Danielle L Schmitt, Barbara Calabrese, Shelley Halpain, Jin Zhang, Padmini Rangamani. Biophys J 2019
15
20

Computational reconstitution of spine calcium transients from individual proteins.
Thomas M Bartol, Daniel X Keller, Justin P Kinney, Chandrajit L Bajaj, Kristen M Harris, Terrence J Sejnowski, Mary B Kennedy. Front Synaptic Neurosci 2015
34
20

Calcium dynamics predict direction of synaptic plasticity in striatal spiny projection neurons.
Joanna Jędrzejewska-Szmek, Sriraman Damodaran, Daniel B Dorman, Kim T Blackwell. Eur J Neurosci 2017
21
20

The NEURON simulation environment.
M L Hines, N T Carnevale. Neural Comput 1997
20

The life cycle of Ca(2+) ions in dendritic spines.
Bernardo L Sabatini, Thomas G Oertner, Karel Svoboda. Neuron 2002
499
20

Calcium time course as a signal for spike-timing-dependent plasticity.
Jonathan E Rubin, Richard C Gerkin, Guo-Qiang Bi, Carson C Chow. J Neurophysiol 2005
91
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.