A citation-based method for searching scientific literature

Emil Uffelmann, Danielle Posthuma. Biol Psychiatry 2021
Times Cited: 6







List of co-cited articles
11 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.
Naomi R Wray, Stephan Ripke, Manuel Mattheisen, Maciej Trzaskowski, Enda M Byrne, Abdel Abdellaoui, Mark J Adams, Esben Agerbo, Tracy M Air, Till M F Andlauer,[...]. Nat Genet 2018
935
33

Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk.
Andrew E Jaffe, Daniel J Hoeppner, Takeshi Saito, Lou Blanpain, Joy Ukaigwe, Emily E Burke, Leonardo Collado-Torres, Ran Tao, Katsunori Tajinda, Kristen R Maynard,[...]. Nat Neurosci 2020
25
33



Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes.
Michael Song, Xiaoyu Yang, Xingjie Ren, Lenka Maliskova, Bingkun Li, Ian R Jones, Chao Wang, Fadi Jacob, Kenneth Wu, Michela Traglia,[...]. Nat Genet 2019
43
33

Genome-wide quantitative enhancer activity maps identified by STARR-seq.
Cosmas D Arnold, Daniel Gerlach, Christoph Stelzer, Łukasz M Boryń, Martina Rath, Alexander Stark. Science 2013
490
33

Schizophrenia risk from complex variation of complement component 4.
Aswin Sekar, Allison R Bialas, Heather de Rivera, Avery Davis, Timothy R Hammond, Nolan Kamitaki, Katherine Tooley, Jessy Presumey, Matthew Baum, Vanessa Van Doren,[...]. Nature 2016
33

10 Years of GWAS Discovery: Biology, Function, and Translation.
Peter M Visscher, Naomi R Wray, Qian Zhang, Pamela Sklar, Mark I McCarthy, Matthew A Brown, Jian Yang. Am J Hum Genet 2017
33

Pleiotropy and Cross-Disorder Genetics Among Psychiatric Disorders.
Phil H Lee, Yen-Chen A Feng, Jordan W Smoller. Biol Psychiatry 2021
7
33

Analysis of shared heritability in common disorders of the brain.
Verneri Anttila, Brendan Bulik-Sullivan, Hilary K Finucane, Raymond K Walters, Jose Bras, Laramie Duncan, Valentina Escott-Price, Guido J Falcone, Padhraig Gormley, Rainer Malik,[...]. Science 2018
692
33

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen,[...]. Genome Biol 2020
37
16

A scalable platform for the development of cell-type-specific viral drivers.
Sinisa Hrvatin, Christopher P Tzeng, M Aurel Nagy, Hume Stroud, Charalampia Koutsioumpa, Oren F Wilcox, Elena G Assad, Jonathan Green, Christopher D Harvey, Eric C Griffith,[...]. Elife 2019
26
16

Comprehensive functional genomic resource and integrative model for the human brain.
Daifeng Wang, Shuang Liu, Jonathan Warrell, Hyejung Won, Xu Shi, Fabio C P Navarro, Declan Clarke, Mengting Gu, Prashant Emani, Yucheng T Yang,[...]. Science 2018
243
16

In vivo simultaneous transcriptional activation of multiple genes in the brain using CRISPR-dCas9-activator transgenic mice.
Haibo Zhou, Junlai Liu, Changyang Zhou, Ni Gao, Zhiping Rao, He Li, Xinde Hu, Changlin Li, Xuan Yao, Xiaowen Shen,[...]. Nat Neurosci 2018
108
16

Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos.
Stephen S Gisselbrecht, Luis A Barrera, Martin Porsch, Anton Aboukhalil, Preston W Estep, Anastasia Vedenko, Alexandre Palagi, Yongsok Kim, Xianmin Zhu, Brian W Busser,[...]. Nat Methods 2013
42
16

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.
Rupali P Patwardhan, Choli Lee, Oren Litvin, David L Young, Dana Pe'er, Jay Shendure. Nat Biotechnol 2009
186
16

PTRE-seq reveals mechanism and interactions of RNA binding proteins and miRNAs.
Kyle A Cottrell, Hemangi G Chaudhari, Barak A Cohen, Sergej Djuranovic. Nat Commun 2018
17
16


Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants.
Evgeny Z Kvon, Yiwen Zhu, Guy Kelman, Catherine S Novak, Ingrid Plajzer-Frick, Momoe Kato, Tyler H Garvin, Quan Pham, Anne N Harrington, Riana D Hunter,[...]. Cell 2020
30
16

High-throughput functional comparison of promoter and enhancer activities.
Thomas A Nguyen, Richard D Jones, Andrew R Snavely, Andreas R Pfenning, Rory Kirchner, Martin Hemberg, Jesse M Gray. Genome Res 2016
59
16

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
16

DNA sequence-level analyses reveal potential phenotypic modifiers in a large family with psychiatric disorders.
Niamh M Ryan, Jayon Lihm, Melissa Kramer, Shane McCarthy, Stewart W Morris, Aleix Arnau-Soler, Gail Davies, Barbara Duff, Elena Ghiban, Caroline Hayward,[...]. Mol Psychiatry 2018
11
16

Complex effects of nucleotide variants in a mammalian cis-regulatory element.
Jamie C Kwasnieski, Ilaria Mogno, Connie A Myers, Joseph C Corbo, Barak A Cohen. Proc Natl Acad Sci U S A 2012
144
16

Linking disease associations with regulatory information in the human genome.
Marc A Schaub, Alan P Boyle, Anshul Kundaje, Serafim Batzoglou, Michael Snyder. Genome Res 2012
478
16

Marked Diversity of Unique Cortical Enhancers Enables Neuron-Specific Tools by Enhancer-Driven Gene Expression.
Stefan Blankvoort, Menno P Witter, James Noonan, Justin Cotney, Cliff Kentros. Curr Biol 2018
32
16

Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap.
Michael J Gandal, Jillian R Haney, Neelroop N Parikshak, Virpi Leppa, Gokul Ramaswami, Chris Hartl, Andrew J Schork, Vivek Appadurai, Alfonso Buil, Thomas M Werge,[...]. Science 2018
428
16

Systematic Investigation of Transcription Factor Activity in the Context of Chromatin Using Massively Parallel Binding and Expression Assays.
Michal Levo, Tali Avnit-Sagi, Maya Lotan-Pompan, Yael Kalma, Adina Weinberger, Zohar Yakhini, Eran Segal. Mol Cell 2017
28
16

Decoding mRNA translatability and stability from the 5' UTR.
Longfei Jia, Yuanhui Mao, Quanquan Ji, Devin Dersh, Jonathan W Yewdell, Shu-Bing Qian. Nat Struct Mol Biol 2020
20
16

In Vivo Imaging of Human MDR1 Transcription in the Brain and Spine of MDR1-Luciferase Reporter Mice.
Kazuto Yasuda, Cynthia Cline, Yvonne S Lin, Rachel Scheib, Samit Ganguly, Ranjit K Thirumaran, Amarjit Chaudhry, Richard B Kim, Erin G Schuetz. Drug Metab Dispos 2015
10
16

Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks.
Michael A White, Connie A Myers, Joseph C Corbo, Barak A Cohen. Proc Natl Acad Sci U S A 2013
121
16

Enhancer-Driven Gene Expression (EDGE) Enables the Generation of Viral Vectors Specific to Neuronal Subtypes.
Rajeevkumar Raveendran Nair, Stefan Blankvoort, Maria Jose Lagartos, Cliff Kentros. iScience 2020
13
16

TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code.
Modi Safra, Ronit Nir, Daneyal Farouq, Ilya Vainberg Slutskin, Schraga Schwartz. Genome Res 2017
52
16

Human 5' UTR design and variant effect prediction from a massively parallel translation assay.
Paul J Sample, Ban Wang, David W Reid, Vlad Presnyak, Iain J McFadyen, David R Morris, Georg Seelig. Nat Biotechnol 2019
49
16

Identification of Functional Variants in the FAM13A Chronic Obstructive Pulmonary Disease Genome-Wide Association Study Locus by Massively Parallel Reporter Assays.
Peter J Castaldi, Feng Guo, Dandi Qiao, Fei Du, Zun Zar Chi Naing, Yan Li, Betty Pham, Tarjei S Mikkelsen, Michael H Cho, Edwin K Silverman,[...]. Am J Respir Crit Care Med 2019
17
16

CRISPR Interference-Based Platform for Multimodal Genetic Screens in Human iPSC-Derived Neurons.
Ruilin Tian, Mariam A Gachechiladze, Connor H Ludwig, Matthew T Laurie, Jason Y Hong, Diane Nathaniel, Anika V Prabhu, Michael S Fernandopulle, Rajan Patel, Mehrnoosh Abshari,[...]. Neuron 2019
90
16

The statistical properties of gene-set analysis.
Christiaan A de Leeuw, Benjamin M Neale, Tom Heskes, Danielle Posthuma. Nat Rev Genet 2016
120
16

A Massively Parallel Reporter Assay of 3' UTR Sequences Identifies In Vivo Rules for mRNA Degradation.
Michal Rabani, Lindsey Pieper, Guo-Liang Chew, Alexander F Schier. Mol Cell 2018
3
33


CRISPR interference-based specific and efficient gene inactivation in the brain.
Yi Zheng, Wei Shen, Jian Zhang, Bo Yang, Yao-Nan Liu, Huihui Qi, Xia Yu, Si-Yao Lu, Yun Chen, Yu-Zhou Xu,[...]. Nat Neurosci 2018
82
16

A viral strategy for targeting and manipulating interneurons across vertebrate species.
Jordane Dimidschstein, Qian Chen, Robin Tremblay, Stephanie L Rogers, Giuseppe-Antonio Saldi, Lihua Guo, Qing Xu, Runpeng Liu, Congyi Lu, Jianhua Chu,[...]. Nat Neurosci 2016
172
16

Genome-wide compendium and functional assessment of in vivo heart enhancers.
Diane E Dickel, Iros Barozzi, Yiwen Zhu, Yoko Fukuda-Yuzawa, Marco Osterwalder, Brandon J Mannion, Dalit May, Cailyn H Spurrell, Ingrid Plajzer-Frick, Catherine S Pickle,[...]. Nat Commun 2016
50
16

Linear models enable powerful differential activity analysis in massively parallel reporter assays.
Leslie Myint, Dimitrios G Avramopoulos, Loyal A Goff, Kasper D Hansen. BMC Genomics 2019
13
16

Exome sequencing in schizophrenia-affected parent-offspring trios reveals risk conferred by protein-coding de novo mutations.
Daniel P Howrigan, Samuel A Rose, Kaitlin E Samocha, Menachem Fromer, Felecia Cerrato, Wei J Chen, Claire Churchhouse, Kimberly Chambert, Sharon D Chandler, Mark J Daly,[...]. Nat Neurosci 2020
39
16

CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic function.
Jacy L Wagnon, Michael Briese, Wenzhi Sun, Connie L Mahaffey, Tomaž Curk, Gregor Rot, Jernej Ule, Wayne N Frankel. PLoS Genet 2012
66
16

Is junk DNA bunk? A critique of ENCODE.
W Ford Doolittle. Proc Natl Acad Sci U S A 2013
212
16

High-resolution genome-wide functional dissection of transcriptional regulatory regions and nucleotides in human.
Xinchen Wang, Liang He, Sarah M Goggin, Alham Saadat, Li Wang, Nasa Sinnott-Armstrong, Melina Claussnitzer, Manolis Kellis. Nat Commun 2018
39
16

A promoter-level mammalian expression atlas.
Alistair R R Forrest, Hideya Kawaji, Michael Rehli, J Kenneth Baillie, Michiel J L de Hoon, Vanja Haberle, Timo Lassmann, Ivan V Kulakovskiy, Marina Lizio, Masayoshi Itoh,[...]. Nature 2014
16

Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder.
Joon-Yong An, Kevin Lin, Lingxue Zhu, Donna M Werling, Shan Dong, Harrison Brand, Harold Z Wang, Xuefang Zhao, Grace B Schwartz, Ryan L Collins,[...]. Science 2018
91
16

Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay.
Dustin Shigaki, Orit Adato, Aashish N Adhikari, Shengcheng Dong, Alex Hawkins-Hooker, Fumitaka Inoue, Tamar Juven-Gershon, Henry Kenlay, Beth Martin, Ayoti Patra,[...]. Hum Mutat 2019
12
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.