A citation-based method for searching scientific literature

Yichen Ge, Fuguo Wu, Mobin Cheng, Jonathan Bard, Xiuqian Mu. Dev Dyn 2020
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Intrinsic control of mammalian retinogenesis.
Mengqing Xiang. Cell Mol Life Sci 2013
57
100


The structure of SHH in complex with HHIP reveals a recognition role for the Shh pseudo active site in signaling.
Ivan Bosanac, Henry R Maun, Suzie J Scales, Xiaohui Wen, Andreas Lingel, J Fernando Bazan, Frederic J de Sauvage, Sarah G Hymowitz, Robert A Lazarus. Nat Struct Mol Biol 2009
96
100

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
100

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
104
100

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
100

Cell fate determination in the vertebrate retina.
C L Cepko, C P Austin, X Yang, M Alexiades, D Ezzeddine. Proc Natl Acad Sci U S A 1996
750
100

Dynamic Notch signaling in neural progenitor cells and a revised view of lateral inhibition.
Ryoichiro Kageyama, Toshiyuki Ohtsuka, Hiromi Shimojo, Itaru Imayoshi. Nat Neurosci 2008
220
100

Hedgehog: functions and mechanisms.
Markku Varjosalo, Jussi Taipale. Genes Dev 2008
819
100

Conserved microRNA pathway regulates developmental timing of retinal neurogenesis.
Anna La Torre, Sean Georgi, Thomas A Reh. Proc Natl Acad Sci U S A 2013
139
100

Gene regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2.
Xiuqian Mu, Xueyao Fu, Phillip D Beremand, Terry L Thomas, William H Klein. Proc Natl Acad Sci U S A 2008
104
100

Hedgehog signalling.
Raymond Teck Ho Lee, Zhonghua Zhao, Philip W Ingham. Development 2016
115
100


Genomic analysis of mouse retinal development.
Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho,[...]. PLoS Biol 2004
440
100

Overlapping spatiotemporal patterns of regulatory gene expression are required for neuronal progenitors to specify retinal ganglion cell fate.
Takae Kiyama, Chai-An Mao, Jang-Hyeon Cho, Xueyao Fu, Ping Pan, Xiuqian Mu, William H Klein. Vision Res 2011
27
100

Requirement for math5 in the development of retinal ganglion cells.
S W Wang, B S Kim, K Ding, H Wang, D Sun, R L Johnson, W H Klein, L Gan. Genes Dev 2001
365
100

Novel Regulatory Mechanisms for the SoxC Transcriptional Network Required for Visual Pathway Development.
Kun-Che Chang, Jonathan Hertz, Xiong Zhang, Xiao-Lu Jin, Peter Shaw, Brooke A Derosa, Janet Y Li, Praseeda Venugopalan, Daniel A Valenzuela, Roshni D Patel,[...]. J Neurosci 2017
24
100


A single-cell transcriptome atlas of the adult human retina.
Samuel W Lukowski, Camden Y Lo, Alexei A Sharov, Quan Nguyen, Lyujie Fang, Sandy Sc Hung, Ling Zhu, Ting Zhang, Ulrike Grünert, Tu Nguyen,[...]. EMBO J 2019
65
100

Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development.
Darshan Sapkota, Hemabindu Chintala, Fuguo Wu, Steven J Fliesler, Zihua Hu, Xiuqian Mu. Proc Natl Acad Sci U S A 2014
53
100

Epitope-tagging Math5 and Pou4f2: new tools to study retinal ganglion cell development in the mouse.
Xueyao Fu, Takae Kiyama, Renzhong Li, Mark Russell, William H Klein, Xiuqian Mu. Dev Dyn 2009
21
100

Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.
Mark M Emerson, Natalia Surzenko, Jillian J Goetz, Jeffrey Trimarchi, Constance L Cepko. Dev Cell 2013
66
100

Regulation of Brn3b by DLX1 and DLX2 is required for retinal ganglion cell differentiation in the vertebrate retina.
Qi Zhang, Jamie Zagozewski, Shaohong Cheng, Rajiv Dixit, Shunzhen Zhang, Jimmy de Melo, Xiuqian Mu, William H Klein, Nadean L Brown, Jeffrey T Wigle,[...]. Development 2017
13
100

Multiple requirements for Hes 1 during early eye formation.
Hae Young Lee, Emily Wroblewski, Gary T Philips, Carrie N Stair, Kevin Conley, Meredith Reedy, Grant S Mastick, Nadean L Brown. Dev Biol 2005
84
100

Moderated statistical tests for assessing differences in tag abundance.
Mark D Robinson, Gordon K Smyth. Bioinformatics 2007
487
100

SOX2 is a dose-dependent regulator of retinal neural progenitor competence.
Olena V Taranova, Scott T Magness, B Matthew Fagan, Yongqin Wu, Natalie Surzenko, Scott R Hutton, Larysa H Pevny. Genes Dev 2006
379
100





Notch activity permits retinal cells to progress through multiple progenitor states and acquire a stem cell property.
Ashutosh P Jadhav, Seo-Hee Cho, Constance L Cepko. Proc Natl Acad Sci U S A 2006
101
100

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Madhvi Menon, Shahin Mohammadi, Jose Davila-Velderrain, Brittany A Goods, Tanina D Cadwell, Yu Xing, Anat Stemmer-Rachamimov, Alex K Shalek, John Christopher Love, Manolis Kellis,[...]. Nat Commun 2019
60
100


RNAscope: a novel in situ RNA analysis platform for formalin-fixed, paraffin-embedded tissues.
Fay Wang, John Flanagan, Nan Su, Li-Chong Wang, Son Bui, Allissa Nielson, Xingyong Wu, Hong-Thuy Vo, Xiao-Jun Ma, Yuling Luo. J Mol Diagn 2012
100

Requirement for Bhlhb5 in the specification of amacrine and cone bipolar subtypes in mouse retina.
Liang Feng, Xiaoling Xie, Pushkar S Joshi, Zhiyong Yang, Koji Shibasaki, Robert L Chow, Lin Gan. Development 2006
103
100

Ptf1a is essential for the differentiation of GABAergic and glycinergic amacrine cells and horizontal cells in the mouse retina.
Hassan Nakhai, Saadettin Sel, Jack Favor, Lidia Mendoza-Torres, Friedrich Paulsen, Gernot I W Duncker, Roland M Schmid. Development 2007
139
100

Prdm13 is required for Ebf3+ amacrine cell formation in the retina.
Noah B Goodson, Jhenya Nahreini, Grace Randazzo, Ana Uruena, Jane E Johnson, Joseph A Brzezinski. Dev Biol 2018
11
100


Two transcription factors, Pou4f2 and Isl1, are sufficient to specify the retinal ganglion cell fate.
Fuguo Wu, Tadeusz J Kaczynski, Santhosh Sethuramanujam, Renzhong Li, Varsha Jain, Malcolm Slaughter, Xiuqian Mu. Proc Natl Acad Sci U S A 2015
54
100

GADD45 proteins: central players in tumorigenesis.
R E Tamura, J F de Vasconcellos, D Sarkar, T A Libermann, P B Fisher, L F Zerbini. Curr Mol Med 2012
163
100

A gene network downstream of transcription factor Math5 regulates retinal progenitor cell competence and ganglion cell fate.
Xiuqian Mu, Xueyao Fu, Hongxia Sun, Phillip D Beremand, Terry L Thomas, William H Klein. Dev Biol 2005
101
100

Vertebrate neural cell-fate determination: lessons from the retina.
F J Livesey, C L Cepko. Nat Rev Neurosci 2001
688
100

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
100


Phosphorylation states change Otx2 activity for cell proliferation and patterning in the Xenopus embryo.
Yumeko Satou, Kohei Minami, Erina Hosono, Hajime Okada, Yuuri Yasuoka, Takashi Shibano, Toshiaki Tanaka, Masanori Taira. Development 2018
2
100


Phospho-regulation of ATOH1 Is Required for Plasticity of Secretory Progenitors and Tissue Regeneration.
Goran Tomic, Edward Morrissey, Sarah Kozar, Shani Ben-Moshe, Alice Hoyle, Roberta Azzarelli, Richard Kemp, Chandra Sekhar Reddy Chilamakuri, Shalev Itzkovitz, Anna Philpott,[...]. Cell Stem Cell 2018
36
100

A conserved regulatory logic controls temporal identity in mouse neural progenitors.
Pierre Mattar, Johan Ericson, Seth Blackshaw, Michel Cayouette. Neuron 2015
68
100

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
468
100



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.