A citation-based method for searching scientific literature

Maria Filipa Pinto, Antonio Baici, Pedro José Barbosa Pereira, Sandra Macedo-Ribeiro, Annalisa Pastore, Fernando Rocha, Pedro M Martins. J Mol Biol 2021
Times Cited: 3







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



PPD: A Manually Curated Database for Experimentally Verified Prokaryotic Promoters.
Wei Su, Meng-Lu Liu, Yu-He Yang, Jia-Shu Wang, Shi-Hao Li, Hao Lv, Fu-Ying Dao, Hui Yang, Hao Lin. J Mol Biol 2021
18
33

RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive.
Yana Rose, Jose M Duarte, Robert Lowe, Joan Segura, Chunxiao Bi, Charmi Bhikadiya, Li Chen, Alexander S Rose, Sebastian Bittrich, Stephen K Burley,[...]. J Mol Biol 2021
25
33

PolarProtDb: A Database of Transmembrane and Secreted Proteins showing Apical-Basal Polarity.
András Zeke, László Dobson, Levente István Szekeres, Tamás Langó, Gábor E Tusnády. J Mol Biol 2021
3
33

aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals.
Federico Zambelli, Matteo Chiara, Erika Ferrandi, Pietro Mandreoli, Marco Antonio Tangaro, Giulio Pavesi, Graziano Pesole. J Mol Biol 2021
1
100

MEDUSA: Prediction of Protein Flexibility from Sequence.
Yann Vander Meersche, Gabriel Cretin, Alexandre G de Brevern, Jean-Christophe Gelly, Tatiana Galochkina. J Mol Biol 2021
11
33

RiPPMiner-Genome: A Web Resource for Automated Prediction of Crosslinked Chemical Structures of RiPPs by Genome Mining.
Priyesh Agrawal, Sana Amir, Deepak, Drishtee Barua, Debasisa Mohanty. J Mol Biol 2021
6
33

BetAware-Deep: An Accurate Web Server for Discrimination and Topology Prediction of Prokaryotic Transmembrane β-barrel Proteins.
Giovanni Madeo, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio. J Mol Biol 2021
3
33





Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics.
Andrew I Jewett, David Stelter, Jason Lambert, Shyam M Saladi, Otello M Roscioni, Matteo Ricci, Ludovic Autin, Martina Maritan, Saeed M Bashusqeh, Tom Keyes,[...]. J Mol Biol 2021
16
33


FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity.
Emma Persson, Miguel Castresana-Aguirre, Davide Buzzao, Dimitri Guala, Erik L L Sonnhammer. J Mol Biol 2021
5
33

MPTherm-pred: Analysis and Prediction of Thermal Stability Changes upon Mutations in Transmembrane Proteins.
A Kulandaisamy, Jan Zaucha, Dmitrij Frishman, M Michael Gromiha. J Mol Biol 2021
5
33

ANuPP: A Versatile Tool to Predict Aggregation Nucleating Regions in Peptides and Proteins.
R Prabakaran, Puneet Rawat, Sandeep Kumar, M Michael Gromiha. J Mol Biol 2021
8
33

ncRNAVar: A Manually Curated Database for Identification of Noncoding RNA Variants Associated with Human Diseases.
Wenliang Zhang, Binghui Zeng, Minglei Yang, Huan Yang, Jianbo Wang, Yongjie Deng, Haiyue Zhang, Guocai Yao, Song Wu, Weizhong Li. J Mol Biol 2021
7
33

ModFlex: Towards Function Focused Protein Modeling.
Mayya Sedova, Lukasz Jaroszewski, Mallika Iyer, Zhanwen Li, Adam Godzik. J Mol Biol 2021
2
50

REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences.
Mohamed Kamel, Kristina Kastano, Pablo Mier, Miguel A Andrade-Navarro. J Mol Biol 2021
1
100


FunRich enables enrichment analysis of OMICs datasets.
Pamali Fonseka, Mohashin Pathan, Sai V Chitti, Taeyoung Kang, Suresh Mathivanan. J Mol Biol 2021
44
33

Constrained Standardization of Count Data from Massive Parallel Sequencing.
Joris Van Houtven, Bart Cuypers, Pieter Meysman, Jef Hooyberghs, Kris Laukens, Dirk Valkenborg. J Mol Biol 2021
1
100

Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data.
Patricia Mirela-Bota, Joaquim Aguirre-Plans, Alberto Meseguer, Cristiano Galletti, Joan Segura, Joan Planas-Iglesias, Javi Garcia-Garcia, Emre Guney, Baldo Oliva, Narcis Fernandez-Fuentes. J Mol Biol 2021
3
33

GeneCaRNA: A Comprehensive Gene-centric Database of Human Non-coding RNAs in the GeneCards Suite.
Ruth Barshir, Simon Fishilevich, Tsippi Iny-Stein, Ofer Zelig, Yaron Mazor, Yaron Guan-Golan, Marilyn Safran, Doron Lancet. J Mol Biol 2021
8
33


geno5mC: A Database to Explore the Association between Genetic Variation (SNPs) and CpG Methylation in the Human Genome.
C Gómez-Martín, E Aparicio-Puerta, J M Medina, Guillermo Barturen, J L Oliver, M Hackenberg. J Mol Biol 2021
1
100


The Science of Enzyme Immobilization.
Jose M Guisan, Fernando López-Gallego, Juan M Bolivar, Javier Rocha-Martín, Gloria Fernandez-Lorente. Methods Mol Biol 2020
5
33

Role of Biocatalysis in Sustainable Chemistry.
Roger A Sheldon, John M Woodley. Chem Rev 2018
366
33

Comprehensive assessment of 2G bioethanol production.
Bhawna Sharma, Christian Larroche, Claude-Gilles Dussap. Bioresour Technol 2020
36
33

The fourth wave of biocatalysis is approaching.
Uwe T Bornscheuer. Philos Trans A Math Phys Eng Sci 2018
44
33

A robust methodology for kinetic model parameter estimation for biocatalytic reactions.
Naweed Al-Haque, Paloma A Santacoloma, Watson Neto, Pär Tufvesson, Rafiqul Gani, John M Woodley. Biotechnol Prog 2012
17
33


Biotransformation of lignocellulosic biomass into industrially relevant products with the aid of fungi-derived lignocellulolytic enzymes.
Sara Saldarriaga-Hernández, Carolina Velasco-Ayala, Paulina Leal-Isla Flores, Magdalena de Jesús Rostro-Alanis, Roberto Parra-Saldivar, Hafiz M N Iqbal, Danay Carrillo-Nieves. Int J Biol Macromol 2020
24
33

Application of the median method to estimate the kinetic constants of the substrate uncompetitive inhibition equation.
Pedro L Valencia, Carolina Astudillo-Castro, Diego Gajardo, Sebastián Flores. J Theor Biol 2017
2
50


Considerations when Measuring Biocatalyst Performance.
Mafalda Dias Gomes, John M Woodley. Molecules 2019
13
33

Applying mechanistic models in bioprocess development.
Rita Lencastre Fernandes, Vijaya Krishna Bodla, Magnus Carlquist, Anna-Lena Heins, Anna Eliasson Lantz, Gürkan Sin, Krist V Gernaey. Adv Biochem Eng Biotechnol 2013
3
33

ICEKAT: an interactive online tool for calculating initial rates from continuous enzyme kinetic traces.
Michael D Olp, Kelsey S Kalous, Brian C Smith. BMC Bioinformatics 2020
13
33



Fungal Beta-glucosidases: a bottleneck in industrial use of lignocellulosic materials.
Annette Sørensen, Mette Lübeck, Peter S Lübeck, Birgitte K Ahring. Biomolecules 2013
111
33


Calculation of statistic estimates of kinetic parameters from substrate uncompetitive inhibition equation using the median method.
Pedro L Valencia, Carolina Astudillo-Castro, Diego Gajardo, Sebastián Flores. Data Brief 2017
2
50


Thermal and operational deactivation of Aspergillus fumigatus β-glucosidase in ethanol/water pretreated wheat straw enzymatic hydrolysis.
Mateusz Wojtusik, Priscilla Vergara, Juan C Villar, Felix Garcia-Ochoa, Miguel Ladero. J Biotechnol 2019
2
50

Deconstruction of lignocellulosic biomass to fuels and chemicals.
Shishir P S Chundawat, Gregg T Beckham, Michael E Himmel, Bruce E Dale. Annu Rev Chem Biomol Eng 2011
392
33

The influence of pH upon the kinetic parameters of the enzymatic hydrolysis of cellobiose with Novozym 188.
V Bravo, M P Páez, M Aoulad, A Reyes, A I García. Biotechnol Prog 2001
5
33

Recent trends in biocatalysis engineering.
Andrés Illanes, Ana Cauerhff, Lorena Wilson, Guillermo R Castro. Bioresour Technol 2012
95
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.