A citation-based method for searching scientific literature

Jincheng Wang, Jiajia Wang, Lijun Yang, Chuntao Zhao, Laiman Natalie Wu, Lingli Xu, Feng Zhang, Qinjie Weng, Michael Wegner, Q Richard Lu. Nat Commun 2020
Times Cited: 4







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
626
50

Organizational principles of 3D genome architecture.
M Jordan Rowley, Victor G Corces. Nat Rev Genet 2018
323
50


Developing in 3D: the role of CTCF in cell differentiation.
Rodrigo G Arzate-Mejía, Félix Recillas-Targa, Victor G Corces. Development 2018
56
50


WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013.
Jing Wang, Dexter Duncan, Zhiao Shi, Bing Zhang. Nucleic Acids Res 2013
25

CTCF and cohesin regulate chromatin loop stability with distinct dynamics.
Anders S Hansen, Iryna Pustova, Claudia Cattoglio, Robert Tjian, Xavier Darzacq. Elife 2017
221
25


Nuclear subcompartments: an overview.
Vinícius Santana Nunes, Nilmar Silvio Moretti. Cell Biol Int 2017
8
25

Locus-specific targeting to the X chromosome revealed by the RNA interactome of CTCF.
Johnny T Kung, Barry Kesner, Jee Young An, Janice Y Ahn, Catherine Cifuentes-Rojas, David Colognori, Yesu Jeon, Attila Szanto, Brian C del Rosario, Stefan F Pinter,[...]. Mol Cell 2015
100
25

Linking cellular stress responses to systemic homeostasis.
Lorenzo Galluzzi, Takahiro Yamazaki, Guido Kroemer. Nat Rev Mol Cell Biol 2018
150
25

Genome-wide targeting of the epigenetic regulatory protein CTCF to gene promoters by the transcription factor TFII-I.
Rodrigo Peña-Hernández, Maud Marques, Khalid Hilmi, Teijun Zhao, Amine Saad, Moulay A Alaoui-Jamali, Sonia V del Rincon, Todd Ashworth, Ananda L Roy, Beverly M Emerson,[...]. Proc Natl Acad Sci U S A 2015
45
25

Loss of p16INK4 expression by methylation is associated with lifespan extension of human mammary epithelial cells.
L I Huschtscha, J R Noble, A A Neumann, E L Moy, P Barry, J R Melki, S J Clark, R R Reddel. Cancer Res 1998
139
25

A genome-wide map of CTCF multivalency redefines the CTCF code.
Hirotaka Nakahashi, Kyong-Rim Kieffer Kwon, Wolfgang Resch, Laura Vian, Marei Dose, Diana Stavreva, Ofir Hakim, Nathanael Pruett, Steevenson Nelson, Arito Yamane,[...]. Cell Rep 2013
175
25


Poly(A) RNA-binding proteins and polyadenosine RNA: new members and novel functions.
Callie P Wigington, Kathryn R Williams, Michael P Meers, Gary J Bassell, Anita H Corbett. Wiley Interdiscip Rev RNA 2014
40
25

The human genome browser at UCSC.
W James Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, David Haussler. Genome Res 2002
25

In vivo ubiquitination and proteasome-mediated degradation of p53(1).
C G Maki, J M Huibregtse, P M Howley. Cancer Res 1996
591
25

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
25

Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics.
Richard M Leggett, Ricardo H Ramirez-Gonzalez, Bernardo J Clavijo, Darren Waite, Robert P Davey. Front Genet 2013
73
25

CTCF facilitates DNA double-strand break repair by enhancing homologous recombination repair.
Khalid Hilmi, Maïka Jangal, Maud Marques, Tiejun Zhao, Amine Saad, Chenxi Zhang, Vincent M Luo, Alasdair Syme, Carlis Rejon, Zhenbao Yu,[...]. Sci Adv 2017
31
25

Redox environment in stem and differentiated cells: A quantitative approach.
O G Lyublinskaya, Ju S Ivanova, N A Pugovkina, I V Kozhukharova, Z V Kovaleva, A N Shatrova, N D Aksenov, V V Zenin, Yu A Kaulin, I A Gamaley,[...]. Redox Biol 2017
27
25

Heightened expression of CTCF in breast cancer cells is associated with resistance to apoptosis.
France Docquier, Dawn Farrar, Vivien D'Arcy, Igor Chernukhin, Abigail F Robinson, Dmitry Loukinov, Sergei Vatolin, Svetlana Pack, Alan Mackay, Robert A Harris,[...]. Cancer Res 2005
79
25


Generation of multiciliated cells in functional airway epithelia from human induced pluripotent stem cells.
Amy L Firth, Carl T Dargitz, Susan J Qualls, Tushar Menon, Rebecca Wright, Oded Singer, Fred H Gage, Ajai Khanna, Inder M Verma. Proc Natl Acad Sci U S A 2014
132
25

Recent evidence that TADs and chromatin loops are dynamic structures.
Anders S Hansen, Claudia Cattoglio, Xavier Darzacq, Robert Tjian. Nucleus 2018
86
25

Breast cancer epigenetics: normal human mammary epithelial cells as a model system.
Rebecca A Hinshelwood, Susan J Clark. J Mol Med (Berl) 2008
54
25

CTCF participates in DNA damage response via poly(ADP-ribosyl)ation.
Deqiang Han, Qian Chen, Jiazhong Shi, Feng Zhang, Xiaochun Yu. Sci Rep 2017
14
25

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
25

Role of Oxidative Stress and Antioxidant Defense Biomarkers in Neurodegenerative Diseases.
Uzma Saleem, Shakila Sabir, Sammia Gul Niazi, Muhammad Naeem, Bashir Ahmad. Crit Rev Eukaryot Gene Expr 2020
4
25


Semaphorin4D promotes axon regrowth and swimming ability during recovery following zebrafish spinal cord injury.
Shi-Xiao Peng, Li Yao, Chun Cui, Hou-de Zhao, Chun-Jie Liu, Yu-Hong Li, Lin-Fang Wang, Shu-Bing Huang, Yan-Qin Shen. Neuroscience 2017
14
25

A tour of 3D genome with a focus on CTCF.
Diane C Wang, William Wang, Linlin Zhang, Xiangdong Wang. Semin Cell Dev Biol 2019
9
25

A Twist2-dependent progenitor cell contributes to adult skeletal muscle.
Ning Liu, Glynnis A Garry, Stephen Li, Svetlana Bezprozvannaya, Efrain Sanchez-Ortiz, Beibei Chen, John M Shelton, Priscilla Jaichander, Rhonda Bassel-Duby, Eric N Olson. Nat Cell Biol 2017
69
25

CTCF and cellular heterogeneity.
Gang Ren, Keji Zhao. Cell Biosci 2019
6
25


Promoter-proximal CCCTC-factor binding is associated with an increase in the transcriptional pausing index.
Sur Herrera Paredes, Michael F Melgar, Praveen Sethupathy. Bioinformatics 2013
23
25

Genome organization around nuclear speckles.
Yu Chen, Andrew S Belmont. Curr Opin Genet Dev 2019
36
25

CTCF/cohesin-mediated DNA looping is required for protocadherin α promoter choice.
Ya Guo, Kevin Monahan, Haiyang Wu, Jason Gertz, Katherine E Varley, Wei Li, Richard M Myers, Tom Maniatis, Qiang Wu. Proc Natl Acad Sci U S A 2012
154
25

Gene-specific requirement for P-TEFb activity and RNA polymerase II phosphorylation within the p53 transcriptional program.
Nathan P Gomes, Glen Bjerke, Briardo Llorente, Stephanie A Szostek, Beverly M Emerson, Joaquin M Espinosa. Genes Dev 2006
208
25


CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation.
Matthias Merkenschlager, Elphège P Nora. Annu Rev Genomics Hum Genet 2016
234
25

Actin binding LIM protein 3 (abLIM3).
Markus Krupp, Arndt Weinmann, Peter R Galle, Andreas Teufel. Int J Mol Med 2006
17
25


CTCF sites display cell cycle-dependent dynamics in factor binding and nucleosome positioning.
Marlies E Oomen, Anders S Hansen, Yu Liu, Xavier Darzacq, Job Dekker. Genome Res 2019
47
25

Expression of two non-mutated genetic elements is sufficient to stimulate oncogenic transformation of human mammary epithelial cells.
Vijay Pandey, Min Zhang, Mingliang You, Weijie Zhang, Rumei Chen, Wei Zhang, Lan Ma, Zheng-Sheng Wu, Tao Zhu, Xiu Qin Xu,[...]. Cell Death Dis 2018
4
25

CTCF: making the right connections.
Rodolfo Ghirlando, Gary Felsenfeld. Genes Dev 2016
156
25

Nuclear speckles: molecular organization, biological function and role in disease.
Lukasz Galganski, Martyna O Urbanek, Wlodzimierz J Krzyzosiak. Nucleic Acids Res 2017
166
25

Direct Observation of Cell-Cycle-Dependent Interactions between CTCF and Chromatin.
Harsha Agarwal, Matthias Reisser, Celina Wortmann, J Christof M Gebhardt. Biophys J 2017
34
25

Unc45b is essential for early myofibrillogenesis and costamere formation in zebrafish.
J Layne Myhre, Jordan A Hills, Francesca Jean, Dave B Pilgrim. Dev Biol 2014
13
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.