A citation-based method for searching scientific literature

Anusha Sriraman, Turja K Debnath, Blerta Xhemalce, Kyle M Miller. Essays Biochem 2020
Times Cited: 6







List of co-cited articles
26 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Perfecting DNA double-strand break repair on transcribed chromatin.
Xin Yi Tan, Michael S Y Huen. Essays Biochem 2020
7
50

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
481
50

DNA double-strand break repair-pathway choice in somatic mammalian cells.
Ralph Scully, Arvind Panday, Rajula Elango, Nicholas A Willis. Nat Rev Mol Cell Biol 2019
359
50

Bon voyage: A transcriptional journey around DNA breaks.
Pierre Caron, Janette van der Linden, Haico van Attikum. DNA Repair (Amst) 2019
33
50


The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
33

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
365
33

Preserving genome integrity and function: the DNA damage response and histone modifications.
Jae Jin Kim, Seo Yun Lee, Kyle M Miller. Crit Rev Biochem Mol Biol 2019
30
33

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
137
33

The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
33

Homologous recombination and human health: the roles of BRCA1, BRCA2, and associated proteins.
Rohit Prakash, Yu Zhang, Weiran Feng, Maria Jasin. Cold Spring Harb Perspect Biol 2015
402
33


BRCA2 controls DNA:RNA hybrid level at DSBs by mediating RNase H2 recruitment.
Giuseppina D'Alessandro, Donna Rose Whelan, Sean Michael Howard, Valerio Vitelli, Xavier Renaudin, Marek Adamowicz, Fabio Iannelli, Corey Winston Jones-Weinert, MiYoung Lee, Valentina Matti,[...]. Nat Commun 2018
105
33

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
226
33

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
156
33

Screen identifies bromodomain protein ZMYND8 in chromatin recognition of transcription-associated DNA damage that promotes homologous recombination.
Fade Gong, Li-Ya Chiu, Ben Cox, François Aymard, Thomas Clouaire, Justin W Leung, Michael Cammarata, Mercedes Perez, Poonam Agarwal, Jennifer S Brodbelt,[...]. Genes Dev 2015
144
33

m5C modification of mRNA serves a DNA damage code to promote homologous recombination.
Hao Chen, Haibo Yang, Xiaolan Zhu, Tribhuwan Yadav, Jian Ouyang, Samuel S Truesdell, Jun Tan, Yumin Wang, Meihan Duan, Leizhen Wei,[...]. Nat Commun 2020
34
33

N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells.
Abdulkadir Abakir, Tom C Giles, Agnese Cristini, Jeremy M Foster, Nan Dai, Marta Starczak, Alejandro Rubio-Roldan, Miaomiao Li, Maria Eleftheriou, James Crutchley,[...]. Nat Genet 2020
70
33


The TIP60 Complex Regulates Bivalent Chromatin Recognition by 53BP1 through Direct H4K20me Binding and H2AK15 Acetylation.
Karine Jacquet, Amélie Fradet-Turcotte, Nikita Avvakumov, Jean-Philippe Lambert, Céline Roques, Raj K Pandita, Eric Paquet, Pauline Herst, Anne-Claude Gingras, Tej K Pandita,[...]. Mol Cell 2016
127
33

The response to DNA damage in heterochromatin domains.
Anna Fortuny, Sophie E Polo. Chromosoma 2018
25
33

Imaging the response to DNA damage in heterochromatin domains reveals core principles of heterochromatin maintenance.
Anna Fortuny, Audrey Chansard, Pierre Caron, Odile Chevallier, Olivier Leroy, Olivier Renaud, Sophie E Polo. Nat Commun 2021
10
33

Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination.
Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, Erica M Manion, Niraj M Shanbhag, Maria Victoria Botuyan, Georges Mer, Roger A Greenberg. Nat Struct Mol Biol 2013
327
33

Poly(ADP-ribose) binding and macroH2A mediate recruitment and functions of KDM5A at DNA lesions.
Ramhari Kumbhar, Anthony Sanchez, Jullian Perren, Fade Gong, David Corujo, Frank Medina, Sravan K Devanathan, Blerta Xhemalce, Andreas Matouschek, Marcus Buschbeck,[...]. J Cell Biol 2021
6
33

Interaction of BARD1 and HP1 Is Required for BRCA1 Retention at Sites of DNA Damage.
Wenwen Wu, Hiroyuki Nishikawa, Takayo Fukuda, Vinayak Vittal, Masahide Asano, Yasuo Miyoshi, Rachel E Klevit, Tomohiko Ohta. Cancer Res 2015
64
33

DNA methylation and regulation of gene expression: Guardian of our health.
Gaurab Aditya Dhar, Shagnik Saha, Parama Mitra, Ronita Nag Chaudhuri. Nucleus (Calcutta) 2021
4
50

Alerting the immune system to DNA damage: micronuclei as mediators.
Kate M MacDonald, Soraya Benguerfi, Shane M Harding. Essays Biochem 2020
7
16

Druggable binding sites in the multicomponent assemblies that characterise DNA double-strand-break repair through non-homologous end joining.
Antonia Kefala Stavridi, Robert Appleby, Shikang Liang, Tom L Blundell, Amanda K Chaplin. Essays Biochem 2020
3
33

Jack of all trades? The versatility of RNA in DNA double-strand break repair.
Ruth F Ketley, Monika Gullerova. Essays Biochem 2020
11
16

The role of DNA damage response in amyotrophic lateral sclerosis.
Yu Sun, Annabel J Curle, Arshad M Haider, Gabriel Balmus. Essays Biochem 2020
9
16

Ubiquitin-like proteins in the DNA damage response: the next generation.
Isabelle C Da Costa, Christine K Schmidt. Essays Biochem 2020
5
20

RecQ helicases in DNA repair and cancer targets.
Joseph A Newman, Opher Gileadi. Essays Biochem 2020
3
33

Repair pathway choice for double-strand breaks.
Yixi Xu, Dongyi Xu. Essays Biochem 2020
9
16

Structural insight into FANCI-FANCD2 monoubiquitination.
Landing Li, Winnie Tan, Andrew J Deans. Essays Biochem 2020
5
20

Base excision repair and its implications to cancer therapy.
Gabrielle J Grundy, Jason L Parsons. Essays Biochem 2020
14
16

Dynamic transcriptomic m6A decoration: writers, erasers, readers and functions in RNA metabolism.
Ying Yang, Phillip J Hsu, Yu-Sheng Chen, Yun-Gui Yang. Cell Res 2018
429
16

The core spliceosome as target and effector of non-canonical ATM signalling.
Maria Tresini, Daniël O Warmerdam, Petros Kolovos, Loes Snijder, Mischa G Vrouwe, Jeroen A A Demmers, Wilfred F J van IJcken, Frank G Grosveld, René H Medema, Jan H J Hoeijmakers,[...]. Nature 2015
151
16


From histones to RNA: role of methylation in cancer.
Blerta Xhemalce. Brief Funct Genomics 2013
12
16

XPA: A key scaffold for human nucleotide excision repair.
Norie Sugitani, Robert M Sivley, Kelly E Perry, John A Capra, Walter J Chazin. DNA Repair (Amst) 2016
67
16

The nonhomologous end-joining pathway of DNA repair is required for genomic stability and the suppression of translocations.
D O Ferguson, J M Sekiguchi, S Chang, K M Frank, Y Gao, R A DePinho, F W Alt. Proc Natl Acad Sci U S A 2000
291
16

Ectopic expression of RAD52 and dn53BP1 improves homology-directed repair during CRISPR-Cas9 genome editing.
Bruna S Paulsen, Pankaj K Mandal, Richard L Frock, Baris Boyraz, Rachita Yadav, Srigokul Upadhyayula, Paula Gutierrez-Martinez, Wataru Ebina, Anders Fasth, Tomas Kirchhausen,[...]. Nat Biomed Eng 2017
44
16

Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription.
Xiangting Wang, Shigeki Arai, Xiaoyuan Song, Donna Reichart, Kun Du, Gabriel Pascual, Paul Tempst, Michael G Rosenfeld, Christopher K Glass, Riki Kurokawa. Nature 2008
737
16



Reading, writing and erasing mRNA methylation.
Sara Zaccara, Ryan J Ries, Samie R Jaffrey. Nat Rev Mol Cell Biol 2019
451
16

Three distinct 3-methylcytidine (m3C) methyltransferases modify tRNA and mRNA in mice and humans.
Luang Xu, Xinyu Liu, Na Sheng, Kyaw Soe Oo, Junxin Liang, Yok Hian Chionh, Juan Xu, Fuzhou Ye, Yong-Gui Gao, Peter C Dedon,[...]. J Biol Chem 2017
105
16

Molecular mechanism of nucleotide excision repair.
W L de Laat, N G Jaspers, J H Hoeijmakers. Genes Dev 1999
853
16

Regulation of DNA damage responses by ubiquitin and SUMO.
Stephen P Jackson, Daniel Durocher. Mol Cell 2013
423
16

Nonhomologous DNA end-joining for repair of DNA double-strand breaks.
Nicholas R Pannunzio, Go Watanabe, Michael R Lieber. J Biol Chem 2018
222
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.