A citation-based method for searching scientific literature

Marco Gasparetto, Felicity Payne, Komal Nayak, Judith Kraiczy, Claire Glemas, Yosef Philip-McKenzie, Alexander Ross, Rachel D Edgar, Daniel R Zerbino, Camilla Salvestrini, Franco Torrente, Nicholas T Ventham, Rahul Kalla, Jack Satsangi, Peter Sarkies, Robert Heuschkel, Matthias Zilbauer. Gastroenterology 2021
Times Cited: 13







List of co-cited articles
37 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Gene expression profiling of CD8+ T cells predicts prognosis in patients with Crohn disease and ulcerative colitis.
James C Lee, Paul A Lyons, Eoin F McKinney, John M Sowerby, Edward J Carr, Francesca Bredin, Hannah M Rickman, Huzefa Ratlamwala, Alexander Hatton, Tim F Rayner,[...]. J Clin Invest 2011
182
61

A blood-based prognostic biomarker in IBD.
Daniele Biasci, James C Lee, Nurulamin M Noor, Diana R Pombal, Monica Hou, Nina Lewis, Tariq Ahmad, Ailsa Hart, Miles Parkes, Eoin F McKinney,[...]. Gut 2019
58
46

Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study.
Subra Kugathasan, Lee A Denson, Thomas D Walters, Mi-Ok Kim, Urko M Marigorta, Melanie Schirmer, Kajari Mondal, Chunyan Liu, Anne Griffiths, Joshua D Noe,[...]. Lancet 2017
276
38

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
30

Oncostatin M drives intestinal inflammation and predicts response to tumor necrosis factor-neutralizing therapy in patients with inflammatory bowel disease.
Nathaniel R West, Ahmed N Hegazy, Benjamin M J Owens, Samuel J Bullers, Bryan Linggi, Sofia Buonocore, Margherita Coccia, Dieter Görtz, Sébastien This, Krista Stockenhuber,[...]. Nat Med 2017
286
30

Clinical and biological predictors of response to standardised paediatric colitis therapy (PROTECT): a multicentre inception cohort study.
Jeffrey S Hyams, Sonia Davis Thomas, Nathan Gotman, Yael Haberman, Rebekah Karns, Melanie Schirmer, Angela Mo, David R Mack, Brendan Boyle, Anne M Griffiths,[...]. Lancet 2019
47
23

First-line treatment with infliximab versus conventional treatment in children with newly diagnosed moderate-to-severe Crohn's disease: an open-label multicentre randomised controlled trial.
Maria M E Jongsma, Martine A Aardoom, Martinus A Cozijnsen, Merel van Pieterson, Tim de Meij, Michael Groeneweg, Obbe F Norbruis, Victorien M Wolters, Herbert M van Wering, Iva Hojsak,[...]. Gut 2022
9
33

Long-term Outcome of Early Combined Immunosuppression Versus Conventional Management in Newly Diagnosed Crohn's Disease.
Daniël R Hoekman, Judith A Stibbe, Filip J Baert, Philip Caenepeel, Philippe Vergauwe, Martine De Vos, Daniel W Hommes, Marc A Benninga, Severine A Vermeire, Geert R D'Haens. J Crohns Colitis 2018
17
23

Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis.
I Arijs, K Li, G Toedter, R Quintens, L Van Lommel, K Van Steen, P Leemans, G De Hertogh, K Lemaire, M Ferrante,[...]. Gut 2009
238
23

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.
Christopher S Smillie, Moshe Biton, Jose Ordovas-Montanes, Keri M Sullivan, Grace Burgin, Daniel B Graham, Rebecca H Herbst, Noga Rogel, Michal Slyper, Julia Waldman,[...]. Cell 2019
237
23

Integrative epigenome-wide analysis demonstrates that DNA methylation may mediate genetic risk in inflammatory bowel disease.
N T Ventham, N A Kennedy, A T Adams, R Kalla, S Heath, K R O'Leary, H Drummond, D C Wilson, I G Gut, E R Nimmo,[...]. Nat Commun 2016
96
15

A CD8+ T cell transcription signature predicts prognosis in autoimmune disease.
Eoin F McKinney, Paul A Lyons, Edward J Carr, Jane L Hollis, David R W Jayne, Lisa C Willcocks, Maria Koukoulaki, Alvis Brazma, Vojislav Jovanovic, D Michael Kemeny,[...]. Nat Med 2010
241
15

T-cell exhaustion, co-stimulation and clinical outcome in autoimmunity and infection.
Eoin F McKinney, James C Lee, David R W Jayne, Paul A Lyons, Kenneth G C Smith. Nature 2015
313
15

Personalising medicine in inflammatory bowel disease-current and future perspectives.
James J Ashton, Enrico Mossotto, Sarah Ennis, R Mark Beattie. Transl Pediatr 2019
15
15

The Medical Management of Paediatric Crohn's Disease: an ECCO-ESPGHAN Guideline Update.
Patrick F van Rheenen, Marina Aloi, Amit Assa, Jiri Bronsky, Johanna C Escher, Ulrika L Fagerberg, Marco Gasparetto, Konstantinos Gerasimidis, Anne Griffiths, Paul Henderson,[...]. J Crohns Colitis 2020
41
15

Clinical Genomics in Inflammatory Bowel Disease.
Holm H Uhlig, Aleixo M Muise. Trends Genet 2017
50
15

Polymorphisms in apoptosis genes predict response to infliximab therapy in luminal and fistulizing Crohn's disease.
T Hlavaty, M Pierik, L Henckaerts, M Ferrante, S Joossens, N van Schuerbeek, M Noman, P Rutgeerts, S Vermeire. Aliment Pharmacol Ther 2005
130
15

Cytokine Networks in the Pathophysiology of Inflammatory Bowel Disease.
Matthias Friedrich, Mathilde Pohin, Fiona Powrie. Immunity 2019
136
15

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Jimmy Z Liu, Suzanne van Sommeren, Hailiang Huang, Siew C Ng, Rudi Alberts, Atsushi Takahashi, Stephan Ripke, James C Lee, Luke Jostins, Tejas Shah,[...]. Nat Genet 2015
15

Transcriptional risk scores link GWAS to eQTLs and predict complications in Crohn's disease.
Urko M Marigorta, Lee A Denson, Jeffrey S Hyams, Kajari Mondal, Jarod Prince, Thomas D Walters, Anne Griffiths, Joshua D Noe, Wallace V Crandall, Joel R Rosh,[...]. Nat Genet 2017
69
15

Challenges in IBD Research: Precision Medicine.
Lee A Denson, Mark Curran, Dermot P B McGovern, Walter A Koltun, Richard H Duerr, Sandra C Kim, R Balfour Sartor, Francisco A Sylvester, Clara Abraham, Edwin F de Zoeten,[...]. Inflamm Bowel Dis 2019
32
15


Single-Cell Analysis of Crohn's Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy.
Jerome C Martin, Christie Chang, Gilles Boschetti, Ryan Ungaro, Mamta Giri, John A Grout, Kyle Gettler, Ling-Shiang Chuang, Shikha Nayar, Alexander J Greenstein,[...]. Cell 2019
162
15

Redefining the IBDs using genome-scale molecular phenotyping.
Terrence S Furey, Praveen Sethupathy, Shehzad Z Sheikh. Nat Rev Gastroenterol Hepatol 2019
24
15

Characterization of FOXP3+CD4+ regulatory T cells in Crohn's disease.
Masayuki Saruta, Qi T Yu, Phillip R Fleshner, Pierre-Yves Mantel, Carsten B Schmidt-Weber, Alison H Banham, Konstantinos A Papadakis. Clin Immunol 2007
143
15

Peripheral blood methylation profiling of female Crohn's disease patients.
Andrew Y F Li Yim, Nicolette W Duijvis, Jing Zhao, Wouter J de Jonge, Geert R A M D'Haens, Marcel M A M Mannens, Adri N P M Mul, Anje A Te Velde, Peter Henneman. Clin Epigenetics 2016
23
15

Identification of Epigenetic Methylation Signatures With Clinical Value in Crohn's Disease.
Inés Moret-Tatay, Elena Cerrillo, Esteban Sáez-González, David Hervás, Marisa Iborra, Juan Sandoval, Enrique Busó, Luis Tortosa, Pilar Nos, Belén Beltrán. Clin Transl Gastroenterol 2019
9
22

Genome-wide peripheral blood leukocyte DNA methylation microarrays identified a single association with inflammatory bowel diseases.
R Alan Harris, Dorottya Nagy-Szakal, Natalia Pedersen, Antone Opekun, Jiri Bronsky, Pia Munkholm, Cathrine Jespersgaard, PaalSkytt Andersen, Bela Melegh, George Ferry,[...]. Inflamm Bowel Dis 2012
63
15

Beyond gene discovery in inflammatory bowel disease: the emerging role of epigenetics.
Nicholas T Ventham, Nicholas A Kennedy, Elaine R Nimmo, Jack Satsangi. Gastroenterology 2013
172
15

Genome-wide methylation profiling in Crohn's disease identifies altered epigenetic regulation of key host defense mechanisms including the Th17 pathway.
Elaine R Nimmo, James G Prendergast, Marian C Aldhous, Nicholas A Kennedy, Paul Henderson, Hazel E Drummond, Bernard H Ramsahoye, David C Wilson, Colin A Semple, Jack Satsangi. Inflamm Bowel Dis 2012
99
15

Identification of disease-associated DNA methylation in B cells from Crohn's disease and ulcerative colitis patients.
Zhenwu Lin, John P Hegarty, Wei Yu, Jon A Cappel, Xi Chen, Pieter W Faber, Yunhua Wang, Lisa S Poritz, Jian-Bing Fan, Walter A Koltun. Dig Dis Sci 2012
37
15

DNA Methylation Profiling in Inflammatory Bowel Disease Provides New Insights into Disease Pathogenesis.
Edel McDermott, Elizabeth J Ryan, Miriam Tosetto, David Gibson, Joe Burrage, Denise Keegan, Kathryn Byrne, Eimear Crowe, Gillian Sexton, Kevin Malone,[...]. J Crohns Colitis 2016
66
15

Whole-Genome DNA Methylation Profiling of CD14+ Monocytes Reveals Disease Status and Activity Differences in Crohn's Disease Patients.
Andrew Y F Li Yim, Nicolette W Duijvis, Mohammed Ghiboub, Catriona Sharp, Enrico Ferrero, Marcel M A M Mannens, Geert R D'Haens, Wouter J de Jonge, Anje A Te Velde, Peter Henneman. J Clin Med 2020
4
50

Pathophysiology of Inflammatory Bowel Diseases.
John T Chang. N Engl J Med 2020
55
15

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
Maxim V Kuleshov, Matthew R Jones, Andrew D Rouillard, Nicolas F Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L Jenkins, Kathleen M Jagodnik, Alexander Lachmann,[...]. Nucleic Acids Res 2016
15

Ulcerative colitis.
Ryan Ungaro, Saurabh Mehandru, Patrick B Allen, Laurent Peyrin-Biroulet, Jean-Frédéric Colombel. Lancet 2017
875
15

Predicting Outcomes to Optimize Disease Management in Inflammatory Bowel Diseases.
Joana Torres, Flavio Caprioli, Konstantinos H Katsanos, Triana Lobatón, Dejan Micic, Marco Zerôncio, Gert Van Assche, James C Lee, James O Lindsay, David T Rubin,[...]. J Crohns Colitis 2016
65
15

Single-cell atlas of colonic CD8+ T cells in ulcerative colitis.
Daniele Corridoni, Agne Antanaviciute, Tarun Gupta, David Fawkner-Corbett, Anna Aulicino, Marta Jagielowicz, Kaushal Parikh, Emmanouela Repapi, Steve Taylor, Dai Ishikawa,[...]. Nat Med 2020
28
7

Reproducibility of research and preclinical validation: problems and solutions.
Lajos Pusztai, Christos Hatzis, Fabrice Andre. Nat Rev Clin Oncol 2013
51
7

Serum Biomarkers Identify Patients Who Will Develop Inflammatory Bowel Diseases Up to 5 Years Before Diagnosis.
Joana Torres, Francesca Petralia, Takahiro Sato, Pei Wang, Shannon E Telesco, Rok Seon Choung, Richard Strauss, Xiao-Jun Li, Renee M Laird, Ramiro L Gutierrez,[...]. Gastroenterology 2020
36
7


Multiomics Analyses to Deliver the Most Effective Treatment to Every Patient With Inflammatory Bowel Disease.
Rinse K Weersma, Ramnik J Xavier, Severine Vermeire, Jeffrey C Barrett. Gastroenterology 2018
12
8

The IBD interactome: an integrated view of aetiology, pathogenesis and therapy.
Heitor S P de Souza, Claudio Fiocchi, Dimitrios Iliopoulos. Nat Rev Gastroenterol Hepatol 2017
147
7

The continuing challenges of translational research: clinician-scientists' perspective.
Shervanthi Homer-Vanniasinkam, Janice Tsui. Cardiol Res Pract 2012
16
7


Big data and large sample size: a cautionary note on the potential for bias.
Robert M Kaplan, David A Chambers, Russell E Glasgow. Clin Transl Sci 2014
127
7

Why Batch Effects Matter in Omics Data, and How to Avoid Them.
Wilson Wen Bin Goh, Wei Wang, Limsoon Wong. Trends Biotechnol 2017
131
7

Validation of Predictive Models in Inflammatory Bowel Diseases.
Richard Kellermayer, Mark van der Laan. Gastroenterology 2021
1
100

A multicenter trial of 6-mercaptopurine and prednisone in children with newly diagnosed Crohn's disease.
J Markowitz, K Grancher, N Kohn, M Lesser, F Daum. Gastroenterology 2000
544
7

European Crohn's and Colitis Organisation Topical Review on Prediction, Diagnosis and Management of Fibrostenosing Crohn's Disease.
Florian Rieder, Giovanni Latella, Fernando Magro, Elif S Yuksel, Peter D R Higgins, Antonio Di Sabatino, Jessica R de Bruyn, Jordi Rimola, Jorge Brito, Dominik Bettenworth,[...]. J Crohns Colitis 2016
105
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.