A citation-based method for searching scientific literature

Christina Palka, Nicholas M Forino, Jendrik Hentschel, Rhiju Das, Michael D Stone. RNA 2020
Times Cited: 3







List of co-cited articles
19 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Effect of pseudouridylation on the structure and activity of the catalytically essential P6.1 hairpin in human telomerase RNA.
Nak-Kyoon Kim, Carla A Theimer, James R Mitchell, Kathleen Collins, Juli Feigon. Nucleic Acids Res 2010
39
66

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
66

Molecular basis of telomere dysfunction in human genetic diseases.
Grzegorz Sarek, Paulina Marzec, Pol Margalef, Simon J Boulton. Nat Struct Mol Biol 2015
52
66

Combining conservation and species-specific differences to determine how human telomerase binds telomeres.
Valerie M Tesmer, Eric M Smith, Oana Danciu, Shilpa Padmanaban, Jayakrishnan Nandakumar. Proc Natl Acad Sci U S A 2019
6
66

The TEL patch of telomere protein TPP1 mediates telomerase recruitment and processivity.
Jayakrishnan Nandakumar, Caitlin F Bell, Ina Weidenfeld, Arthur J Zaug, Leslie A Leinwand, Thomas R Cech. Nature 2012
197
66

Telomerase Mechanism of Telomere Synthesis.
R Alex Wu, Heather E Upton, Jacob M Vogan, Kathleen Collins. Annu Rev Biochem 2017
86
66

TPP1 OB-fold domain controls telomere maintenance by recruiting telomerase to chromosome ends.
Franklin L Zhong, Luis F Z Batista, Adam Freund, Matthew F Pech, Andrew S Venteicher, Steven E Artandi. Cell 2012
183
66


A critical stem-loop structure in the CR4-CR5 domain of mammalian telomerase RNA.
Jiunn-Liang Chen, Kay Keyer Opperman, Carol W Greider. Nucleic Acids Res 2002
117
66

Cryo-EM structure of substrate-bound human telomerase holoenzyme.
Thi Hoang Duong Nguyen, Jane Tam, Robert A Wu, Basil J Greber, Daniel Toso, Eva Nogales, Kathleen Collins. Nature 2018
85
66

The telomerase database.
Joshua D Podlevsky, Christopher J Bley, Rebecca V Omana, Xiaodong Qi, Julian J-L Chen. Nucleic Acids Res 2008
134
66

MolProbity: More and better reference data for improved all-atom structure validation.
Christopher J Williams, Jeffrey J Headd, Nigel W Moriarty, Michael G Prisant, Lizbeth L Videau, Lindsay N Deis, Vishal Verma, Daniel A Keedy, Bradley J Hintze, Vincent B Chen,[...]. Protein Sci 2018
580
66

Specificity requirements for human telomere protein interaction with telomerase holoenzyme.
Alec N Sexton, Daniel T Youmans, Kathleen Collins. J Biol Chem 2012
73
66

Reverse transcriptase motifs in the catalytic subunit of telomerase.
J Lingner, T R Hughes, A Shevchenko, M Mann, V Lundblad, T R Cech. Science 1997
944
66

Evolutionary perspectives of telomerase RNA structure and function.
Joshua D Podlevsky, Julian J-L Chen. RNA Biol 2016
43
66


Structure of Telomerase with Telomeric DNA.
Jiansen Jiang, Yaqiang Wang, Lukas Sušac, Henry Chan, Ritwika Basu, Z Hong Zhou, Juli Feigon. Cell 2018
52
66

Structure of Tetrahymena telomerase reveals previously unknown subunits, functions, and interactions.
Jiansen Jiang, Henry Chan, Darian D Cash, Edward J Miracco, Rachel R Ogorzalek Loo, Heather E Upton, Duilio Cascio, Reid O'Brien Johnson, Kathleen Collins, Joseph A Loo,[...]. Science 2015
88
66

Coordinated DNA dynamics during the human telomerase catalytic cycle.
Joseph W Parks, Michael D Stone. Nat Commun 2014
31
66

A template-dependent dislocation mechanism potentiates K65R reverse transcriptase mutation development in subtype C variants of HIV-1.
Dimitrios Coutsinos, Cédric F Invernizzi, Daniela Moisi, Maureen Oliveira, Jorge L Martinez-Cajas, Bluma G Brenner, Mark A Wainberg. PLoS One 2011
33
33

Structure of HIV-1 reverse transcriptase cleaving RNA in an RNA/DNA hybrid.
Lan Tian, Min-Sung Kim, Hongzhi Li, Jimin Wang, Wei Yang. Proc Natl Acad Sci U S A 2018
17
33

Probing structure/function relationships of HIV-1 reverse transcriptase with styrene oxide N2-guanine adducts.
E Forgacs, G Latham, W A Beard, R Prasad, K Bebenek, T A Kunkel, S H Wilson, R S Lloyd. J Biol Chem 1997
25
33


RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications.
Danny Incarnato, Edoardo Morandi, Lisa Marie Simon, Salvatore Oliviero. Nucleic Acids Res 2018
19
33

The RNA structurome: transcriptome-wide structure probing with next-generation sequencing.
Chun Kit Kwok, Yin Tang, Sarah M Assmann, Philip C Bevilacqua. Trends Biochem Sci 2015
88
33


Architecture and secondary structure of an entire HIV-1 RNA genome.
Joseph M Watts, Kristen K Dang, Robert J Gorelick, Christopher W Leonard, Julian W Bess, Ronald Swanstrom, Christina L Burch, Kevin M Weeks. Nature 2009
533
33

Antibody cross-reactivity accounts for widespread appearance of m1A in 5'UTRs.
Anya V Grozhik, Anthony O Olarerin-George, Miriam Sindelar, Xing Li, Steven S Gross, Samie R Jaffrey. Nat Commun 2019
25
33


Quantitative dimethyl sulfate mapping for automated RNA secondary structure inference.
Pablo Cordero, Wipapat Kladwang, Christopher C VanLang, Rhiju Das. Biochemistry 2012
72
33



RNA structure inference through chemical mapping after accidental or intentional mutations.
Clarence Y Cheng, Wipapat Kladwang, Joseph D Yesselman, Rhiju Das. Proc Natl Acad Sci U S A 2017
20
33

Specificity and mechanism of error-prone replication by human immunodeficiency virus-1 reverse transcriptase.
K Bebenek, J Abbotts, J D Roberts, S H Wilson, T A Kunkel. J Biol Chem 1989
269
33

The reverse transcription signature of N-1-methyladenosine in RNA-Seq is sequence dependent.
Ralf Hauenschild, Lyudmil Tserovski, Katharina Schmid, Kathrin Thüring, Marie-Luise Winz, Sunny Sharma, Karl-Dieter Entian, Ludivine Wacheul, Denis L J Lafontaine, James Anderson,[...]. Nucleic Acids Res 2015
105
33

Understanding the errors of SHAPE-directed RNA structure modeling.
Wipapat Kladwang, Christopher C VanLang, Pablo Cordero, Rhiju Das. Biochemistry 2011
70
33

Epitranscriptomics: Shrinking maps of RNA modifications.
Anya V Grozhik, Samie R Jaffrey. Nature 2017
14
33

The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution.
Modi Safra, Aldema Sas-Chen, Ronit Nir, Roni Winkler, Aharon Nachshon, Dan Bar-Yaacov, Matthias Erlacher, Walter Rossmanith, Noam Stern-Ginossar, Schraga Schwartz. Nature 2017
171
33

Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocol.
Matthew G Seetin, Wipapat Kladwang, John P Bida, Rhiju Das. Methods Mol Biol 2014
44
33

High-throughput determination of RNA structures.
Eric J Strobel, Angela M Yu, Julius B Lucks. Nat Rev Genet 2018
60
33


NMRPipe: a multidimensional spectral processing system based on UNIX pipes.
F Delaglio, S Grzesiek, G W Vuister, G Zhu, J Pfeifer, A Bax. J Biomol NMR 1995
33

Structural divergence creates new functional features in alphavirus genomes.
Katrina M Kutchko, Emily A Madden, Clayton Morrison, Kenneth S Plante, Wes Sanders, Heather A Vincent, Marta C Cruz Cisneros, Kristin M Long, Nathaniel J Moorman, Mark T Heise,[...]. Nucleic Acids Res 2018
21
33

Primerize: automated primer assembly for transcribing non-coding RNA domains.
Siqi Tian, Joseph D Yesselman, Pablo Cordero, Rhiju Das. Nucleic Acids Res 2015
12
33

Standardization of RNA chemical mapping experiments.
Wipapat Kladwang, Thomas H Mann, Alex Becka, Siqi Tian, Hanjoo Kim, Sungroh Yoon, Rhiju Das. Biochemistry 2014
37
33

Epitranscriptome sequencing technologies: decoding RNA modifications.
Xiaoyu Li, Xushen Xiong, Chengqi Yi. Nat Methods 2016
158
33

High-throughput sequencing for 1-methyladenosine (m(1)A) mapping in RNA.
Lyudmil Tserovski, Virginie Marchand, Ralf Hauenschild, Florence Blanloeil-Oillo, Mark Helm, Yuri Motorin. Methods 2016
32
33

Protein synthesis by ribosomes with tethered subunits.
Cédric Orelle, Erik D Carlson, Teresa Szal, Tanja Florin, Michael C Jewett, Alexander S Mankin. Nature 2015
109
33

In vivo analysis of influenza A mRNA secondary structures identifies critical regulatory motifs.
Lisa Marie Simon, Edoardo Morandi, Anna Luganini, Giorgio Gribaudo, Luis Martinez-Sobrido, Douglas H Turner, Salvatore Oliviero, Danny Incarnato. Nucleic Acids Res 2019
18
33

DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo.
Meghan Zubradt, Paromita Gupta, Sitara Persad, Alan M Lambowitz, Jonathan S Weissman, Silvi Rouskin. Nat Methods 2017
136
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.